XLOC_030080 (rhbdd3)


Basic Information

Item Value
gene id XLOC_030080
gene name rhbdd3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24882633 ~ 24886597 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058823
GCTGTCAAAATAAAAGGGATGTCAAGTAACATCGGCGTTGTTTGGTCTCTTTAATAatttacaattaataaaataaatacgacATAAGTACAGCTGGTTGTAATTACACTCGTCGTTATCCGTTGCTAGGATGCTAGCGTCTGGCAGTGAAGTGCAAATGAAAACATGGATAGGGTTAACATTACCTATGATACATCTGACATAAGCATATATTGAGGTATATACATGTAAACATTGGTATGCGTTTGTCAGTTTACAATGCTTAATAATATCTTTCCGGCATGGATGTGGTCTGGATCAAACCGTCCAGGGTGTTGTAGTGGAACATTTTTAATCCTATCATTAATTGTGTCGACTTGGCTCTGTGGTATTCATGCCAGTCTAAGTTTAGGACCAGGTGGGGAATTTCCTGGATTTTATGATTTCATCTTCTACGCCTTCAGTAATGAAGAGCTGACCTCATTTCTCCACAACATCTCCCTGCTGCTCTGGATTGGGCCCTGTCAGGAGAGAAGATGGGGGACTTTTACCTTCCTCACCCTCTCCTTCATCTCGGCTCTGCTCCTTCCTCCTATTTATGCCCTGTTTCTTTTTGTTACTGGAGATGAAGCCAGCAGGGTCTCTGGATACGCAGCCATTCACCTCGCCCTGCTCACGGCTCAGTGTCGACAGGTCAAGCAGAGGAGAGTCCTGCGCTTTGTTCCTGTCTGGTTCTTACCTTGGCTCTTGTTGATTTTTGACCTCTTCCTCCTTCCCAGTGCTCCAGGCCTGCTGCACTTCTATGCCATTTGCCTGGGACTCAACTACAATAATGAGTTAATCGAAATGCTGGAGCAGATAGAGAGACTGGGTGCATGTGCCTGCTTGCCAAAATGGGCCTACATCCCAGTCACCTCTCGTTCGCAGCTACCAGTTTACAACAACACCTCAACAAGACCGGAGCCATTTAGCAGTGCATTCCAGTCTGAGAATTATTCAACATGGCAGCAGTCTGTGTCAGAGTGGCCCCAGGAATCTCCGTTGGCAACAGATTCACAGTTATTAGAGGAGCAGATGCTGAGAGCAGGAATATTAGCATCTCTCCACGACGCACCTGAGGGTACAGCCGACAAAGTGGAAGTACCAAAGTCCTCAGTATCCTCATTACGTTTGCAGCAGCTGGAGAAGATGGGCTTTCCCACAGAGAAAGCTGTAGTGGCTCTGGCAGCTACAGGGCAGCTGGATGGAGCCATCTCTTTGCTTATCGATGACCAGATCGGAGAAGAGACTGTGGTCATATCGAAGGGGAAGAAGTCAGCATCATAGTTCAGGGAGATCGCTTCATATTGAAGCATTGCCCTATTGCTTTACTTAGGCAAGTTGAACTGTTATTAAGCatttacttctttttttgtgACTTTGTGGTGTGCAACAGAAAGCTCCAGTGGATTATGGGTGGTGTGGAAAATTATTATAGCTATACAATGGTTTGGCAGCTTTCATGATGAAGTTTGAAGAAAATCATGTGGTTTCTTTGCTAACATTTACAACAAATTAAACATCCAGCAATTACTGAGTAATGATGAAAATATGGAttgtcttaaaaaaaagaaacagtttattttgtttttaacaccAACTGGTAAGACTGCACACTGGCAAGACAAATTCACACAGAGAGGCTAGAAATGGAAAGAAAATACAGGTGACGTTACATAAATTGGTATA

Function

symbol description
rhbdd3 Predicted to enable serine-type endopeptidase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RHBDD3 (rhomboid domain containing 3).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-39 Predicted to enable serine-type endopeptidase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RHBDD3 (rhomboid domain containing 3).

Ensembl:

ensembl_id ENSDARG00000079816

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058823 True 1707 mRNA 0.44 5 24882633 24886597

Neighbor

gene id symbol gene type direction distance location
XLOC_030079 NA coding upstream 3068 24873805 ~ 24879565 (+)
XLOC_030078 NA coding upstream 47316 24816325 ~ 24835317 (+)
XLOC_030077 atp6v0a2b coding upstream 314764 24543862 ~ 24567869 (+)
XLOC_030076 dgcr8 coding upstream 350247 24520437 ~ 24532386 (+)
XLOC_030075 NA coding upstream 410557 24469471 ~ 24472076 (+)
XLOC_030081 mrpl41 coding downstream 186297 25072894 ~ 25075179 (+)
XLOC_030082 paxx coding downstream 197788 25084385 ~ 25087292 (+)
XLOC_030083 NA coding downstream 361601 25248198 ~ 25249676 (+)
XLOC_030084 carnmt1 coding downstream 417902 25304499 ~ 25309549 (+)
XLOC_030085 NA coding downstream 424666 25311263 ~ 25314752 (+)
XLOC_030074 NA non-coding upstream 432113 24340677 ~ 24450520 (+)
XLOC_030071 NA non-coding upstream 604307 24261550 ~ 24278326 (+)
XLOC_030090 NA non-coding downstream 814428 25701025 ~ 25710432 (+)
XLOC_030094 dre-mir-204-1 non-coding downstream 1085471 25972068 ~ 25972160 (+)
XLOC_030106 NA non-coding downstream 1593077 26479674 ~ 26481301 (+)

Expression


Co-expression Network