XLOC_030081 (mrpl41)


Basic Information

Item Value
gene id XLOC_030081
gene name mrpl41
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 25072894 ~ 25075179 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058824
GACCAATCACTGTTGGCTTCCTTTTTACGCTCAACGTGGGAATACAGTGAGCTTGAATAAGCGACAGCACTCGATTCAAGGTCAGTGGTGCAGATAAATCACTCTGAAATGGGGGTGCTGTCTGCGCTGGCGCGGGGGTTTGTGAGAGGAGCGGACCGAATGGCGGAGTGGACTAGTAAACGTGGACCCAGGACATTCTACAAGAGCCGTGGAGCAAGACCCACTGGGATAGTCACCTCCAGCAGAAAGTTCATACCTATTCGAGCCATGATCCCAGAGTTTGTGGTACCCAATCTGGAAGGATTTAACCTAAAAGCCTATGTGTCCTACAAAACTCCAGCAGGGACGGAGGAGCCCATGACCCCAGAGAAGCTCTTCAATGAAGTGGTGGCCCCGCAGATCCAGAGGGACATTGAGGAAGGAGTTTTCAGTGAGGACAATCTGGAGAAATACGGACTGGAGAAAACTCAAGAGGGGAAGCTCTTCAAACTGCACCCCAAGAACTTTGCGCGTTAAGTGAACTTGATTTGTCTTGGACTGTAAATAAgtgtgtgatgttttaaagaacagAAGACATCACAGAGtaaacattattttgtaaatcTCCCAgtcagtaaataattaaaatatgctggaatgg
>TCONS_00058825
ATGGGGGTGCTGTCTGCGCTGGCGCGGGGGTTTGTGAGAGGAGCGGACCGAATGGCGGAGTGGACTAGTAAACGTGGACCCAGGACATTCTACAAGAGCCGTGGAGCAAGACCCACTGGGATAGTCACCTCCAGCAGAAAGTTCATACCTATTCGAGCCATGATCCCAGAGTTTGTGGTACCCAATCTGGAAGGATTTAACCTAAAAGCCTATGTGTCCTACAAAACTCCAGCAGGGACGGAGGAGCCCATGACCCCAGAGAAGCTCTTCAATGAAGTGGTGGCCCCGCAGATCCAGAGGGACATTGAGGAAGGAGTTTTCAGTGAGGACAATCTGGAGAAATACGGACTGGAGAAAACTCAAGAGGGGAAGCTCTTCAAACTGCACCCCAAGAACTTTGCGCGTTAAGT

Function

symbol description
mrpl41 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to act upstream of or within apoptotic process. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL41 (mitochondrial ribosomal protein L41).

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006412 translation biological_process
GO:0007049 cell cycle biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-050522-200 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to act upstream of or within apoptotic process. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL41 (mitochondrial ribosomal protein L41).

Ensembl:

ensembl_id ENSDARG00000002264

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058824 False 640 mRNA 0.47 2 25072894 25075179
TCONS_00058825 True 410 mRNA 0.53 1 25074648 25075057

Neighbor

gene id symbol gene type direction distance location
XLOC_030080 rhbdd3 coding upstream 186297 24882633 ~ 24886597 (+)
XLOC_030079 NA coding upstream 193329 24873805 ~ 24879565 (+)
XLOC_030078 NA coding upstream 237577 24816325 ~ 24835317 (+)
XLOC_030077 atp6v0a2b coding upstream 505025 24543862 ~ 24567869 (+)
XLOC_030076 dgcr8 coding upstream 540508 24520437 ~ 24532386 (+)
XLOC_030082 paxx coding downstream 9206 25084385 ~ 25087292 (+)
XLOC_030083 NA coding downstream 173019 25248198 ~ 25249676 (+)
XLOC_030084 carnmt1 coding downstream 229320 25304499 ~ 25309549 (+)
XLOC_030085 NA coding downstream 236084 25311263 ~ 25314752 (+)
XLOC_030086 trpm6 coding downstream 241882 25317061 ~ 25358683 (+)
XLOC_030075 NA non-coding upstream 600818 24469471 ~ 24472076 (+)
XLOC_030074 NA non-coding upstream 622374 24340677 ~ 24450520 (+)
XLOC_030071 NA non-coding upstream 794568 24261550 ~ 24278326 (+)
XLOC_030090 NA non-coding downstream 625846 25701025 ~ 25710432 (+)
XLOC_030094 dre-mir-204-1 non-coding downstream 896889 25972068 ~ 25972160 (+)
XLOC_030106 NA non-coding downstream 1404495 26479674 ~ 26481301 (+)

Expression


Co-expression Network