XLOC_030082 (paxx)


Basic Information

Item Value
gene id XLOC_030082
gene name paxx
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 25084385 ~ 25087292 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058826
AATCGTGACTGTTTTGTTTACGAATAGTTCCTGGTTGGAAAGCCGCtctattttacagtctatggttcagCTTTAGTGTGATTGTATGGTAAAGAAGTATGGAACAAAATAACTCGGAGTCTAAATCAGTCCTTTGCACATTGCTGGATAAAAATGATCAGTCAAAGTATGTGTTTTTTACGCAAAAGCTACCAGCAGGAGTCATAAACATTGGATTTACCAATGGTGAAGATGTTTGGAAAACACATCTTTCAGAGGAGATTCTCTCTCAGCTTTTTAAGAAATTTTCATTAAAGTCCACAGAGGATTACACCTTCAAAATCAAATGTGCATGCAAGACTGGCAGAGCGTTTGTGAAGCTGCTGGAGGACAGTGCTGTGCTGCATTTAGGAGCTGAAGCCACAGATCTCAGCCTGTCTCTAGCAAAACTCACAGACTCTGAGGGAAGGATGGAAGTCAAGGACCTGCTCTTTAAAATGGCAGATAGCTTGCAACAACTAGATAgtGCTTCCTCTTCATTTAGTCCAGGCAAAGGTTATCAGAAGAGGAGTGCTGAATTTGAACCTAAAAAGCAGCATAAGGGTCCAGTAGTAGCAGTTAAAAAACGTCTTCCTGGAGATTCTCTCATCAACCCAGGAACAAAAAGGAAGAAACCTGCAACAGGTGTGGCGTTTGATGATGAATGATGTCAATGTAGCGTCCAGATTTTAATAAGTATCAATTATTAGTTTTTATCAaacccaatttttttttattttcaacttgCAAAGCATGAAAACAGCCGTTTTTAATCATCGTGCATCTATTTAAGCTTTTATTAAATGCAACTGCAGAatgatttttaatgtatttttaaactatgttgctaataaacatatatatatttt
>TCONS_00058827
AGTTCCTGGTTGGAAAGCCGCtctattttacagtctatggttcagCTTTAGTGTGATTGTATGGTAAAGAAGTATGGAACAAAATAACTCGGAGTCTAAATCAGTCCTTTGCACATTGCTGGATAAAAATGATCAGTCAAAGTATGTGTTTTTTACGCAAAAGCTACCAGCAGGAGTCATAAACATTGGATTTACCAATGGTGAAGATGTTTGGAAAACACATCTTTCAGAGGAGATTCTCTCTCAGCTTTTTAAGAAATTTTCATTAAAGTCCACAGAGGATTACACCTTCAAAATCAAATGTGCATGCAAGACTGGCAGAGCGTTTGTGAAGCTGCTGGAGGACAGTGCTGTGCTGCATTTAGGAGCTGAAGCCACAGATCTCAGCCTGTCTCTAGCAAAACTCACAGACTCTGAGGGAAGGATGGAAGTCAAGGACCTGCTCTTTAAAATGGCAGATAGCTTGCAACAACTAGATAGTCAAGgtGCTTCCTCTTCATTTAGTCCAGGCAAAGGTTATCAGAAGAGGAGTGCTGAATTTGAACCTAAAAAGCAGCATAAGGGTCCAGTAGTAGCAGTTAAAAAACGTCTTCCTGGAGATTCTCTCATCAACCCAGGAACAAAAAGGAAGAAACCTGCAACAGGTGTGGCGTTTGATGATGAATGATGTCAATGTAGCGTCCAGATTTTAATAAGTATCAATTATTAGTTTTTATCAaacccaatttttttttattttcaacttgCAAAGCATGAAAACAGCCG

Function

symbol description
paxx Predicted to enable molecular adaptor activity. Predicted to be involved in double-strand break repair via nonhomologous end joining. Predicted to be part of nonhomologous end joining complex. Predicted to be active in nucleus and site of double-strand break. Orthologous to human PAXX (PAXX non-homologous end joining factor).

GO:

id name namespace
GO:0006303 double-strand break repair via nonhomologous end joining biological_process
GO:0051103 DNA ligation involved in DNA repair biological_process
GO:0035861 site of double-strand break cellular_component
GO:0005634 nucleus cellular_component
GO:0070419 nonhomologous end joining complex cellular_component
GO:0060090 molecular adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-206 Predicted to enable molecular adaptor activity. Predicted to be involved in double-strand break repair via nonhomologous end joining. Predicted to be part of nonhomologous end joining complex. Predicted to be active in nucleus and site of double-strand break. Orthologous to human PAXX (PAXX non-homologous end joining factor).

Ensembl:

ensembl_id ENSDARG00000078807

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058826 False 887 mRNA 0.37 7 25084385 25087292
TCONS_00058827 True 765 mRNA 0.40 7 25084410 25087189

Neighbor

gene id symbol gene type direction distance location
XLOC_030081 mrpl41 coding upstream 9206 25072894 ~ 25075179 (+)
XLOC_030080 rhbdd3 coding upstream 197788 24882633 ~ 24886597 (+)
XLOC_030079 NA coding upstream 204820 24873805 ~ 24879565 (+)
XLOC_030078 NA coding upstream 249068 24816325 ~ 24835317 (+)
XLOC_030077 atp6v0a2b coding upstream 516516 24543862 ~ 24567869 (+)
XLOC_030083 NA coding downstream 160906 25248198 ~ 25249676 (+)
XLOC_030084 carnmt1 coding downstream 217207 25304499 ~ 25309549 (+)
XLOC_030085 NA coding downstream 223971 25311263 ~ 25314752 (+)
XLOC_030086 trpm6 coding downstream 229769 25317061 ~ 25358683 (+)
XLOC_030087 kifl coding downstream 498577 25585869 ~ 25587613 (+)
XLOC_030075 NA non-coding upstream 612309 24469471 ~ 24472076 (+)
XLOC_030074 NA non-coding upstream 633865 24340677 ~ 24450520 (+)
XLOC_030071 NA non-coding upstream 806059 24261550 ~ 24278326 (+)
XLOC_030090 NA non-coding downstream 613733 25701025 ~ 25710432 (+)
XLOC_030094 dre-mir-204-1 non-coding downstream 884776 25972068 ~ 25972160 (+)
XLOC_030106 NA non-coding downstream 1392382 26479674 ~ 26481301 (+)

Expression


Co-expression Network