XLOC_030083


Basic Information

Item Value
gene id XLOC_030083
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 25248198 ~ 25249676 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061434
GTTGTCCATaggaattaattttaaaaagtatatttcttCCAATAAATTGATTACCTTTCCATTTTGAATTAATTTAAGCTTTACATAAGTAAAAATTGCGATTGTTTTTGTAACTTATTATTACccattaaaaaactgttttttacTGACCTTCAAAATAAATTGCTTCAACAAAACTCTATTTAAGTGTTTATATCCAAAGTAAAACTTCACGACCCGCCCACATGACGCAGCACGCATGCAGAGCAACGACACCGTTGCTCATACCTGTACCGGACCAGTTTCGACGTTCTGTGGAGTTTTTGAGGGCTTTATACAACGTGCAACACATAGAGATGTCAGAAGCATAAATGACATGATGGCTAGGACATATAGCTGGGGGAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGATAAATGAAGAATTCCAAAGGTGTACTGGTGTTCCACAAGAATCGGTTTTTATGTCCCAGCTGGACAAATACACTCCAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTGGTGAAAACATCAATTGGAGTTATTGGAACTGATACAGG

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0061053 somite development biological_process
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061434 True 600 lncRNA 0.38 3 25248198 25249676

Neighbor

gene id symbol gene type direction distance location
XLOC_030082 paxx coding upstream 160906 25084385 ~ 25087292 (+)
XLOC_030081 mrpl41 coding upstream 173019 25072894 ~ 25075179 (+)
XLOC_030080 rhbdd3 coding upstream 361601 24882633 ~ 24886597 (+)
XLOC_030079 NA coding upstream 368633 24873805 ~ 24879565 (+)
XLOC_030078 NA coding upstream 412881 24816325 ~ 24835317 (+)
XLOC_030084 carnmt1 coding downstream 54823 25304499 ~ 25309549 (+)
XLOC_030085 NA coding downstream 61587 25311263 ~ 25314752 (+)
XLOC_030086 trpm6 coding downstream 67385 25317061 ~ 25358683 (+)
XLOC_030087 kifl coding downstream 336193 25585869 ~ 25587613 (+)
XLOC_030088 si:dkey-96l17.6 coding downstream 346558 25596234 ~ 25605668 (+)
XLOC_030075 NA non-coding upstream 776122 24469471 ~ 24472076 (+)
XLOC_030074 NA non-coding upstream 797678 24340677 ~ 24450520 (+)
XLOC_030071 NA non-coding upstream 969872 24261550 ~ 24278326 (+)
XLOC_030090 NA non-coding downstream 451349 25701025 ~ 25710432 (+)
XLOC_030094 dre-mir-204-1 non-coding downstream 722392 25972068 ~ 25972160 (+)
XLOC_030106 NA non-coding downstream 1229998 26479674 ~ 26481301 (+)
XLOC_030114 NA non-coding downstream 1646358 26896034 ~ 26906786 (+)

Expression


Co-expression Network