XLOC_030085


Basic Information

Item Value
gene id XLOC_030085
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 25311263 ~ 25314752 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061701
GCTGAAATGCTGTTGGTGTTGTTCGACCTCTCTAGCCACAGAGGGCACTGTATTCACACGTTTCAACTTCATTTACGACACCAATGCCGTAAACAGCTGGGGAACTGCATGCAACTGCGAACTAATCAGCTACACTTTTACATAGTTTAAACTTTAACGTTTTGAAATATTTGGTCGCACACATGACCAAACGGACAGCAGAAAATGTTTTGTCGCCCGAAGTCCCTCACAAAAGATGTTTTCGTTCTGTCTCCAACAAACCGGTCGGAGGTGTGAACGTGACCCAAAACGCCTCGTTATTAACATCAGATGAACAGCGATGCAGGAAAAGACCGAACTCTGTCGAAGACCAGCTGGACACAGATAACTTACCGAGAAAACTGGCCGCAAGCAGGGCTAATTCAGTGCTAGCTGAGCAGAACATATCCCAGTCTAGAACATtcgaggatgatgatgatgctggaAGACCTGCGACGCGACGGTCATCACGCGCGCTTCAACCTGAGTCAAGCAAACAGCCAGACGAACAAAATAAACACACCGCAGGAGACAAGGTGATGCACTTAGACGAGGACCTCTCTTCATTCAATTCCTTTCAGTTCTGGCGGGTTCCTCTGCCCGAGCTGGATCTGTCTCTCCTGGAGGGTGAACCCTGCTCGGAGACAATGGAAACCTGAGGACATCGCCAGCGCACAAAAAATGAACTTCTGAACAAAGCCCTGTGCTGTGTACAGTGTGGAGGCCTGCAGCAGACGCTTTCCTTCTGCTGGGAACAcatgatggtcacatgacctcgTATTCATCTGCAGCAGTGGTCAAGTGTTCGAAAATGTGAACGCGTAATATACTGCATATTGGAATGATCATGTCTGTCAGTAGCTGTAAAGGGGATGCACAAACTTTCTTTTTCTTGGACTGAGCCACATTTCTTTAAGCACTGTTGATGGTgttcatgtaatgtaatgtaatgtaatgtgtatttatatattaagttCAGTAGGTATTTACACTTTAAATCTTTagttaatactttattttgtaaaCCATAGGGCATTGTTTCTTTCCACATCATGTGGCACTTTGTAAGAGTTTGTATGTTCCTGTGAACAGTGTTTTAATGGCTGTATTTTTGAAATTGCACAGCAGCAATAAAAGGTCTTTTTTATATGCG
>TCONS_00058829
ACTGTATTCACACGTTTCAACTTCATTTACGACACCAATGCCGTAAACAGCTGGGGAACTGCATGCAACTGCGAACTAATCAGCTACACTTTTACATAGTTTAAACTTTAACGTTTTGAAATATTTGGTCGCACACATGACCAAACGGACAGCAGAAAATGTTTTGTCGCCCGAAGTCCCTCACAAAAGATGTTTTCGTTCTGTCTCCAACAAACCGGTCGGAGGTGTGAACGTGACCCAAAACGCCTCGTTATTAACATCAGATGAACAGCGATGCAGGAAAAGACCGAACTCTGTCGAAGACCAGCTGGACACAGATAACTTACCGAGAAAACTGGCCGCAAGCAGGGCTAATTCAGTGCTAGCTGAGCAGAACATATCCCAGTCTAGAACATtcgaggatgatgatgatgctggaAGACCTGCGACGCGACGGTCATCACGCGCGCTTCAACCTGAGTCAAGCAAACAGCCAGACGAACAAAATAAACACACCGCAGGAGACAAGGTGATGCACTTAGACGAGGACCTCTCTTCATTCAATTCCTTTCAGTTCTGGCGGGTTCCTCTGCCCGAGCTGGATCTGTCTCTCCTGGAGGGTGAACCCTGCTCGGAGACAATGGAAACCTGAGGACATCGCCAGCGCACAAAAAGCAAGTTCGGTCTTGTAGAGTAGTTGTTCTAGCTTCTGCCAAATTACCTGACTGGACATGATGAGACGATACCCCCTGATCTTCACCAGATGAACTTCTGAACAAAGCCCTGTGCTGTGTACAGTGTGGAGGCCTGCAGCAGACGCTTTCCTTCTGCTGGGAACAcatgatggtcacatgacctcgTATTCATCTGCAGCAGTGGTCAAGTGTTCGAAAATGTGAACGCGTAATATACTGCATATTGGAATGATCATGTCTGTCAGTAGCTGTAAAGGGGATGCACAAACTTTCTTTTTCTTGGACTGAGCCACATTTCTTTAAGCACTGTTGATGGTgttcatgtaatgtaatgtaatgtaatgtgtatttatatattaagttCAGTAGGTATTTACACTTTAAATCTTTagttaatactttattttgtaaaCCATAGGGCATTGTTTCTTTCCACATCATGTGGCACTTTGTAAGAGTTTGTATGTTCCTGTGAACAGTGTTTTAATGGCTGTATTTTTGAAATTGCACAGCAGCAATAAAAGGTCTTTTTTATATGCGA

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-5231 No description available

Ensembl:

ensembl_id ENSDARG00000105278

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061701 False 1171 lncRNA 0.44 3 25311263 25314751
TCONS_00058829 True 1215 mRNA 0.44 2 25311309 25314752

Neighbor

gene id symbol gene type direction distance location
XLOC_030084 carnmt1 coding upstream 1714 25304499 ~ 25309549 (+)
XLOC_030083 NA coding upstream 61587 25248198 ~ 25249676 (+)
XLOC_030082 paxx coding upstream 223971 25084385 ~ 25087292 (+)
XLOC_030081 mrpl41 coding upstream 236084 25072894 ~ 25075179 (+)
XLOC_030080 rhbdd3 coding upstream 424666 24882633 ~ 24886597 (+)
XLOC_030086 trpm6 coding downstream 2309 25317061 ~ 25358683 (+)
XLOC_030087 kifl coding downstream 271117 25585869 ~ 25587613 (+)
XLOC_030088 si:dkey-96l17.6 coding downstream 281482 25596234 ~ 25605668 (+)
XLOC_030089 zfand5a coding downstream 366090 25680842 ~ 25694362 (+)
XLOC_030090 NA coding downstream 386273 25701025 ~ 25710432 (+)
XLOC_030079 NA non-coding upstream 431698 24873805 ~ 24879565 (+)
XLOC_030078 NA non-coding upstream 475946 24816325 ~ 24835317 (+)
XLOC_030075 NA non-coding upstream 839187 24469471 ~ 24472076 (+)
XLOC_030074 NA non-coding upstream 860743 24340677 ~ 24450520 (+)
XLOC_030094 dre-mir-204-1 non-coding downstream 657316 25972068 ~ 25972160 (+)
XLOC_030106 NA non-coding downstream 1164922 26479674 ~ 26481301 (+)
XLOC_030114 NA non-coding downstream 1581282 26896034 ~ 26906786 (+)
XLOC_030117 NA non-coding downstream 1634959 26949711 ~ 27051459 (+)

Expression


Co-expression Network