XLOC_030095 (klf9)


Basic Information

Item Value
gene id XLOC_030095
gene name klf9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 26075230 ~ 26078165 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058849
AGACATACAGTTGACGCACTTATGAGGGAAGAAGGGGATGACAGTACGCAGTAGTTCCACGCTGTCTCGTGTGGCTAATACAAGATTGGGAATAAGCACCTAGGATGTCCCTTCGATAACTTGTAGACACAAGAAACACAAGCTTTTATCCTTCTTTTGGACACTCTTTCATCCAAGTCACATTGGGAACGACACGTGTAGGCGTGAAACCACGTTTTCTGGAGTCTGCTGAATCCCGATGCGCAGATGATGACAACCCCCCACACTGCCATTTAAGTTTTACTGCTCTTTTACACCGGCTTACTTCTACATTTACAGCACATTTGGGGTGACTACGATGACGGACGTAGATATTGCAGCAAGGTCCTTGGGGACGGTTTCAAACGTCGAGCGCTCCGACAAACTAACCGGCGAGGAGGGGTCTGAAGAAAGTCAAGAAAGCCGGACTCTGTTGATGGTCGCAATGATTCTGCTGGACTTAAACCAGTGCATACCGAGCGGCATCAGCGCCAAGCGAATAGTGGACAGTGATGCGGAGAatcgggagaaccgggagaaGTGCAAACAGACTGCGGGCAGGGTTAAAAGGACACGGAAGCGCGACCGACTGCACGCATCCGCGGAGAAAAGACACTGCTGCCCGTATGCAGGCTGTGGTAAAATATACGGCAAGTCTTCCCATCTGAAGGCGCACTTCAGGGTTCACACCGGTGAGAGGCCCTTTCAGTGTACCTGGCCTGGCTGTGCAAAAAAATTCTCTCGCTCGGATGAACTGACAAGACACTTTCGCACACACACGGGGGAAAAGCGTTTCATGTGCCCACTTTGTGACAAATGCTTCATGAGAAGCGACCACCTCACCAAACACGCCCGCAGACACGCTGGCTTCCACCCCAGTATGCTCCAGGGTCACGCCGGGCGAAGACGACACTCTTCAACATCCACATCCTCCTCTGGCTCCAGCGATCATATGTCTGCTGGTGTTTAAGCATTTTGACTGTCCCTCCTACCTGACACAACACGTTCAGGAGTCTCTGCTAGTGAGTTGGTGATGTAAGATATCAGGCGTGTTGCGTGATAGAGACaaacaaaatattctgaaaacaaacaatgaatatCACACGTGCAGAAATCATCAAGCAGGAACAATGAATAATGAACTTTTAATCCGAGGGTTATTTAAAAGTGTCTTTTTTGGCATTTGTTGGTTCCACAAAGAACCGCCAACATCCATAAAATCTTGCACAAGAAGTCatagttaaaaaacaaaacaacatgagATCTTTagattattgaaatgtttttcatacaaaaatattttctaaaaaagaTCACTAAAATGTTTTTGGGAACCAAACATTGTTGTTCTATTATATTGCcacaaacaaacaaggaaatGAAAAACCTCCCCCAGCATAAACACTGAATTGATTTCAACACAGAGTAAGCAGATTTTCTGC

Function

symbol description
klf9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within T cell proliferation and erythrocyte maturation. Is expressed in forebrain; hindbrain; and midbrain. Orthologous to human KLF9 (Kruppel like factor 9).

GO:

id name namespace
GO:0042098 T cell proliferation biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043249 erythrocyte maturation biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-244 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within T cell proliferation and erythrocyte maturation. Is expressed in forebrain; hindbrain; and midbrain. Orthologous to human KLF9 (Kruppel like factor 9).

Ensembl:

ensembl_id ENSDARG00000068194

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058849 True 1460 mRNA 0.46 2 26075230 26078165

Neighbor

gene id symbol gene type direction distance location
XLOC_030093 trpm3 coding upstream 11898 25945246 ~ 26063332 (+)
XLOC_030094 dre-mir-204-1 coding upstream 103070 25972068 ~ 25972160 (+)
XLOC_030092 cemip2 coding upstream 260580 25760112 ~ 25814650 (+)
XLOC_030091 abhd17b coding upstream 317652 25733774 ~ 25757578 (+)
XLOC_030090 NA coding upstream 364798 25701025 ~ 25710432 (+)
XLOC_030096 si:dkey-201c13.2 coding downstream 1013 26079178 ~ 26083142 (+)
XLOC_030097 bco2l coding downstream 43228 26121393 ~ 26130527 (+)
XLOC_030098 si:ch211-214j8.12 coding downstream 53525 26131690 ~ 26136723 (+)
XLOC_030099 dhfr coding downstream 60148 26138313 ~ 26146488 (+)
XLOC_030100 ankrd34bb coding downstream 77914 26156079 ~ 26159921 (+)
XLOC_030085 NA non-coding upstream 760478 25311263 ~ 25314752 (+)
XLOC_030083 NA non-coding upstream 825554 25248198 ~ 25249676 (+)
XLOC_030079 NA non-coding upstream 1195665 24873805 ~ 24879565 (+)
XLOC_030106 NA non-coding downstream 401509 26479674 ~ 26481301 (+)
XLOC_030114 NA non-coding downstream 817869 26896034 ~ 26906786 (+)
XLOC_030117 NA non-coding downstream 871546 26949711 ~ 27051459 (+)
XLOC_030118 NA non-coding downstream 997838 27076003 ~ 27091304 (+)
XLOC_030126 NA non-coding downstream 1576085 27654250 ~ 27654718 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_03376850_03378630 KLF9 coding CI01000339 null 3376054 ~ 3379163 (+)