XLOC_030102 (marveld2b)


Basic Information

Item Value
gene id XLOC_030102
gene name marveld2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 26204561 ~ 26211846 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058857
TTCTTGTCAAACCGGTTTGGATCGTGACATCAGTCATTGGGCTGGACAAGTCACGTGATCGATTCCTCTTCACCTGTAGCACCATCGGCGGAAGACAGGCGAAACTGTCGATACCAGATAGTTTTTTGAGGAACAACTGTTTTTAATCCTGCCAGTGAGGCGATGTTACTACAGTACTGAGTTCACACTGCTGCTAGGACCATCCCCATGTCATTTGGAAACGGGTCAGCATCCCGCTTTGACCGGGTCCGAGATATGCCTCACTATGATCAGGTGCCCATCGGCTCTATGCCGTGGGGTCAGCAACCTCCTTACCCCCTTGGTGGTGGAGTAGCAGCATCCAGTTTTGAGAGTTTACCACCACCTCCGCTACCTGAAAATCCCCCTGTTGGACCAGAATTCTACCCGAGTGATGTTGAAGACCAAGTGGATGATGCCATGGACATCAAACCCATCCGACGCTTCATTCCTGACTCTGTGAAGAACTTCTTCAGGGCCAGTGTCAACCGAGGAAGCAAAAAATTGACTTTTCCTCTACCACCACCACCAATAGATGGAAACACCACCAGCCAAGGCGTCCCGTGTTCCCCTCCACACTCTCGGGCACCATCGCCAACAGCTCCCAGCTCTTACCTAGACCCTTATGGAGGATCTGGGGGCAGCTACACTTCAAGGAAGGAGCAGGCAATGTTATTAGGGGAGCCACTGGAATCAGTTTCTGGACGCTCTTTGCAGACGGCTATGACTTACAGTGAGAAGGTGGAGGAGTACAATCAGCGCTATGCCTACATGAAGTCCTGGGCCGGACTCTTGCGTATTTTAGGATGCGTGGAGTTGCTTTTGGGTGCTGCTGTTTTTGCCTGCGTCTGTGCATATGTTCACAAGGATAATGAGTGGTTTAATATGTATGGTTACTCAATGCATCAGGTGTATGGGGGAGCATCAATGGGTGGGATGTATGGAGGATATGGGTCTTCATACTCAGGACCTTTGACACCCTTTGTCCTTGTGGTTGCTGGAGTGGCTTGGATAGTGACTGTCATTATATTAATCTTAGGAATAACCATGTATTATCGTACCATTCTACTCGACTCCAGCTGGTGGCCAATCACAGAGTGTGTGGTAAATGTGGCATTAGGATTGCTCTACTTGGCAGCTGCAATTGTGTACGTGCGAGACACACTTCGTGGAGGTCTCTGCTATTATCAACAATTCACTGTTGGGCCCAATGCAGGATTTTGTCGGACTGAAGCTGGACAGAACGCTGCCATCATTTTTCTCTTTGTAAACATGCTGTTGTATCTTGTTGGAGCCATCGTCTGTCTAAAGATGTGGAGACATGAAGCTGCTAGGATGCGCAGAGAGAGATTGGAACAAGATaTGAAGTCAGATGGGCTTCCACTCAACATGATTGGTGCCGGCTCAAGTGTCTCAGTGCCCATCCAAAGTGCTCCAGTAATGACCAAGCTAGAGACTTTTGATGGCATGCCTGATCATCCAGCTATGATGGAACCGGAGATTTTGAGGGGTCACATCCCTGCTGGCCACATCCCCAAACCTTTGGTCATTGCAGATTATGTGGCGAAATATCCAACAATCCGCACTGATGAGGAGAGGGAGCGCTACAAAGCTGTGTTTAACGATCAATACGCTGAGTATAAAGAACTGCACGCCGAGGTTCAGGTTTTAACACAGAAGTTTGAGGAAATGGATAATCTGATGAGGAATCTACCACAACGACCTTCCAGCCAGATGGAGCAAGAGAGAATCAGTAGCATTGTTCAAGAGTATAACAGAAAAAAGGCTGACCCAACTTACCAGGAAAAAAGGGAGAGATGTGAATACCTGAAGAACAAACTTGCTCACATAAAGCAGAAAATTCAGGAGTATGACAAAATCATGGACTGGAATGATGGTTACAGCTAGATGGAACCCcaatatacttttaaaaatcatgttaAACTTTACAGATGTTCCAAGAAAGAAAGTGACATGCCTGAAAGTTACGTGTTTGGTTTGGGCTTTGTTGGTAGCAAAATCATATTAAATGCAGTAAATAATGAAGAACATTTTAAAGCCtcaaatttaaatagttttaacatTCGAATAAATGTTACTTACTAAAATATTGGCgtaaatattaagttaaagtttcaatcacatatatatatatatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattacgacttctgaggatcaataattgTTGATCAATTAACTGCGTATACCCTCAGTATATTCAACGGTTTTCCTGATTAGACTTCAGTAATTGTTTGTATTCGCGTCCCCTTTAACTTTATACCAAATGTTTCTTTTTACTCGCATCTTGTTGCAATTGGTGCATTTTTGTTCAACTTGCGTCGTTCCCTGATCATTGACGACCACAGCAGCCGTGAGAATATTTCGTGAGAGTTCTTAGAAGATCACAACAAACCAACTGAATGATGTCTCGCATGGGCGTCGCTTTAGCCCCCGAGATTTCTATTCAGCCCCTCTCAAACTTTTGCGGCTACTTCATTAATTGTACACTATCTAAATGATAGCCTCAGCAGTCTCCTTCATATTTGACACAAAAACGGCGACAGACTTCTCCGTTTTTCATTTAGTCAGCAAACCGCAGCTGTGCAGAGCGAGAGCACAAGGTTCTCGATAGATTGTGTATAATAATGTCGgcatatttgcagttctttgctaTAGAAACACTTGCTACCTCGGCGCTCCCCTCATCACAACTGCTTCCTCCAGTGAAGTGTAAATCTTAACAAACATTTTGTTGTGcttttttcacatttaattaagaaaataaaacgCATGACGGTGCATGTGGCATTGCCAGAATCATATGCACAGAATTAAACAGTGACAGAACCACTCAGTTAATATTCTCATTTTAACTGCATATCTGTTTTCctgatttaaatgtatatatataggctatatttttaatatgggctgattttttattttgtgttgttataTAGAGAATTTAATGTAAAAGGTAGGCTATCTTCAGTCATCACTGCAGAAATCCTGGATTGcttttatatttatagatttgttaataaaataatagtttctTCTTTATGTGAATTTTTACAGTAATATCTTCTATAGTTTTTGTATTTACGTCAGTCTACCTTTAAATGTATTCCTTTTTATTAATTGTGGAAGTTACTGCACTGTATTGTTACAAGTTTCCTTCTTTATTTCTTATAAAATAAAGAGCTAGTAC

Function

symbol description
marveld2b Predicted to act upstream of or within cell-cell junction organization and sensory perception of sound. Predicted to be located in bicellular tight junction; plasma membrane; and tricellular tight junction. Predicted to be integral component of membrane. Is expressed in lateral line system; olfactory placode; otic placode; peripheral olfactory organ; and ventral mesoderm. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 49. Orthologous to human MARVELD2 (MARVEL domain containing 2).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-54 Predicted to act upstream of or within cell-cell junction organization and sensory perception of sound. Predicted to be located in bicellular tight junction; plasma membrane; and tricellular tight junction. Predicted to be integral component of membrane. Is expressed in lateral line system; olfactory placode; otic placode; peripheral olfactory organ; and ventral mesoderm. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 49. Orthologous to human MARVELD2 (MARVEL domain containing 2).

Ensembl:

ensembl_id ENSDARG00000061651

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058857 True 3276 mRNA 0.42 8 26204561 26211846

Neighbor

gene id symbol gene type direction distance location
XLOC_030101 AK6 coding upstream 1316 26199537 ~ 26203245 (+)
XLOC_030100 ankrd34bb coding upstream 44640 26156079 ~ 26159921 (+)
XLOC_030099 dhfr coding upstream 58073 26138313 ~ 26146488 (+)
XLOC_030098 si:ch211-214j8.12 coding upstream 67838 26131690 ~ 26136723 (+)
XLOC_030097 bco2l coding upstream 74034 26121393 ~ 26130527 (+)
XLOC_030103 oclnb coding downstream 775 26212621 ~ 26220871 (+)
XLOC_030104 gtf2h2 coding downstream 9165 26221011 ~ 26233068 (+)
XLOC_030105 si:ch211-214j8.1 coding downstream 36534 26248380 ~ 26261125 (+)
XLOC_030106 NA coding downstream 267828 26479674 ~ 26481301 (+)
XLOC_030107 tango2 coding downstream 474433 26686279 ~ 26726220 (+)
XLOC_030094 dre-mir-204-1 non-coding upstream 232401 25972068 ~ 25972160 (+)
XLOC_030090 NA non-coding upstream 494129 25701025 ~ 25710432 (+)
XLOC_030085 NA non-coding upstream 889809 25311263 ~ 25314752 (+)
XLOC_030083 NA non-coding upstream 954885 25248198 ~ 25249676 (+)
XLOC_030079 NA non-coding upstream 1324996 24873805 ~ 24879565 (+)
XLOC_030114 NA non-coding downstream 684188 26896034 ~ 26906786 (+)
XLOC_030117 NA non-coding downstream 737865 26949711 ~ 27051459 (+)
XLOC_030118 NA non-coding downstream 864157 27076003 ~ 27091304 (+)
XLOC_030126 NA non-coding downstream 1442404 27654250 ~ 27654718 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_03464254_03476581 MARVELD2B coding CI01000339 null 3463296 ~ 3476673 (+)