XLOC_030125 (zmat4a)


Basic Information

Item Value
gene id XLOC_030125
gene name zmat4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 27583117 ~ 27743830 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058906
aacattttaaaatataaccaTATGTGAGAAGTCAAGCCTGTTTGGGATAATTTAGTGATTTACACTGTACTGTAAGATATTTTTacaaaatgacaaataatcaGTTTTAACTCTACACGCATTATCGCGTtaaattataaatttaaccaTCTAATTCAGCATCATTCTCTCCAATCTTCCTGATTTATGCACTGTAGTGTCATTATCCATCCTTGCTTGTAAAGCCACTACTGCAGAAAAAAAGCACTACTTCAGCCATCCAGCCAATGGAGGACGCGGGGCGGAGAACGCTCTGCAATTGAACTAAATGACCGCAGGCAGCCGAACACGAGCATCCCTTCTACACACGCGCCTTCATCTCTTCTCACAGTCAATGGATTACACCTTCTCCATCCAAGTGCAGCGCCATCTGACCGTGTACCAGACGCACTTACACGAGGACTACAGCTTAGAGTTACAGATGAAGTCAACAGAGGTGGATCAAGGGCTTTTCACAGACAGTTACTGCAAAGTGTGCAGCGCTCAGCTCATCTCCGAGTCACAGAGAGTGGCACATTATGAGAGCCGGAAACATGCAAACAAAGTGCGTCTGTATTACATGTTGCATCCAGTAGATGGGGGATGTCCAGCAAAGAAGCTCAGAACAGATGACGGAAGCGAGGAGGGAGATGTGGATAAGAACAAATGCTGTACACTGTGTAATATGTCCTTTACTTCTGCGGTGGTAGCGCAGTCTCATTACCAAGGCAAGATTCATGCAAAAAGGCTTAAACTTCTGCTGGGAGAACAGCCTGCCATAACAGCCAAAGAGGTGCCACCTAGTCCTGTGAAAACGGCCTCGTCAGAAGTCTCACCTGTGAGCTCGGCCCGTCAGCACCGGGACTCTGACCGCTACTGTCAGCTCTGTAATGCGTGGTTCAACAACCCTGGAATGGCACAGCAACACTACGATGGCAAAAAGCACAAGAAGAATGCAGCACGGGCAGATCTGCTGGAACAGCTAGGGAAGACTTTAGACATGGGAGAAATGAAAGGTCTAAAACGCTGCTACACATGTGACGTCTGCAGTGTCACGCTGAATTCAGTGGCACAGTATCATGCACACCTGCAGGGCTCAAAGCACCAAAACAACCTAAAAAGTCAGCTGTGTGTCCAGTGA
>TCONS_00058907
CGAGCATCCCTTCTACACACGCGCCTTCATCTCTTCTCACAGTCAATGGATTACACCTTCTCCATCCAAGTGCAGCGCCATCTGACCGTGTACCAGACGCACTTACACGAGGACTACAGCTTAGAGTTACAGATGAAGTCAACAGAGGTGGATCAAGGGCTTTTCACAGACAGTTACTGCAAAGTGTGCAGCGCTCAGCTCATCTCCGAGTCACAGAGAGTGGCACATTATGAGAGCCGGAAACATGCAAACAAAGTGCGTCTGTATTACATGTTGCATCCAGTAGATGGGGGATGTCCAGCAAAGAAGCTCAGAACAGATGACGGAAGCGAGGAGGGAGATGTGGATAAGAACAAATGCTGTACACTGTGTAATATGTCCTTTACTTCTGCGGTGGTAGCGCAGTCTCATTACCAAGGCAAGATTCATGCAAAAAGGCTTAAACTTCTGCTGGGAGAACAGCCTGCCATAACAGCCAAAGAGGTGCCACCTAGTCCTGTGAAAACGGCCTCGTCAGAAGTCTCACCTGTGAGCTCGGCCCGTCAGCACCGGGACTCTGACCGCTACTGTCAGCTCTGTAATGCGTGGTTCAACAACCCTGGAATGGCACAGCAACACTACGATGGCAAAAAGCACAAGAAGAATGCAGCACGGGCAGATCTGCTGGAACAGCTAGGGAAGACTTTAGACATGGGAGAAATGAAAGGTCTAAAACGCTGCTACACATGTGACGTCTGCAGTGTCACGCTGAATTCAGTGGCACAGTATCATGCACACCTGCAGGGCTCAAAGCACCAAAACAAgtaa
>TCONS_00058908
ATGAAGTCAACAGAGGTGGATCAAGGGCTTTTCACAGACAGTTACTGCAAAGTGTGCAGCGCTCAGCTCATCTCCGAGTCACAGAGAGTGGCACATTATGAGGTGAGATCTGCTTTCTGTCTTTCTTCTCTaagaaaaaatattatcagacatactgtgaaaatttccttgctctaa
>TCONS_00058910
ATGAAGTCAACAGAGGTGGATCAAGGGCTTTTCACAGACAGTTACTGCAAAGTGTGCAGCGCTCAGCTCATCTCCGAGTCACAGAGAGTGGCACATTATGAGAGCCGGAAACATGCAAACAAAGTGCGTCTGTATTACATGTTGCATCCAGTAGATGGGGGATGTCCAGCAAAGAAGCTCAGAACAGATGACGGAAGCGAGGAGGGAGATGTGGATAAGAACAAATGCTGTACACTGTGTAATATGTCCTTTACTTCTGCGGTGGTAGCGCAGTCTCATTACCAAGGCAAGATTCATGCAAAAAGGCTTAAACTTCTGCTGGGAGAACAGCCTGCCATAACAGCCAAAGGTCTAAAACGCTGCTACACATGTGACGTCTGCAGTGTCACGCTGAATTCAGTGGCACAGTATCATGCACACCTGCAGGGCTCAAAGCACCAAAACAAgtaa
>TCONS_00058909
ATGAAGTCAACAGAGGTGGATCAAGGGCTTTTCACAGACAGTTACTGCAAAGTGTGCAGCGCTCAGCTCATCTCCGAGTCACAGAGAGTGGCACATTATGAGAGCCGGAAACATGCAAACAAAGTGCGTCTGTATTACATGTTGCATCCAGTAGATGGGGGATGTCCAGCAAAGAAGCTCAGAACAGATGACGGAAGCGAGGAGGGAGATGTGGATAAGAACAAATGCTGTACACTGTGTAATATGTCCTTTACTTCTGCGGTGGTAGCGCAGTCTCATTACCAAGGCAAGATTCATGCAAAAAGGCTTAAACTTCTGCTGGGAGAACAGCCTGCCATAACAGCCAAAGCGCGCGCATTCCCATTTACTTGCGCAAAGCAACCAAAAGTCTCACCTGTGAGCTCGGCCCGTCAGCACCGGGACTCTGACCGCTACTGTCAGCTCTGTAATGCGTGGTTCAACAACCCTGGAATGGCACAGCAACACTACGATGGCAAAAAGCACAAGAAGAATGCAGCACGGGCAGATCTGCTGGAACAGCTAGGGAAGACTTTAGACATGGGAGAAATGAAAGGTCTAAAACGCTGCTACACATGTGACGTCTGCAGTGTCACGCTGAATTCAGTGGCACAGTATCATGCACACCTGCAGGGCTCAAAGCACCAAAACAAgtaa

Function

symbol description
zmat4a Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in nucleus. Is expressed in habenula; hindbrain; and retinal inner nuclear layer. Orthologous to human ZMAT4 (zinc finger matrin-type 4).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-333 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in nucleus. Is expressed in habenula; hindbrain; and retinal inner nuclear layer. Orthologous to human ZMAT4 (zinc finger matrin-type 4).

Ensembl:

ensembl_id ENSDARG00000092987

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058906 False 1159 mRNA 0.46 7 27583117 27743830
TCONS_00058907 False 807 mRNA 0.50 6 27583445 27719313
TCONS_00058908 False 177 mRNA 0.42 2 27609014 27613771
TCONS_00058910 False 450 mRNA 0.48 4 27609014 27719313
TCONS_00058909 True 675 mRNA 0.49 6 27609014 27719313

Neighbor

gene id symbol gene type direction distance location
XLOC_030124 loxl2b coding upstream 44372 27434601 ~ 27538745 (+)
XLOC_030123 histh1l coding upstream 148766 27432958 ~ 27434351 (+)
XLOC_030122 zgc:153409 coding upstream 152870 27429872 ~ 27430247 (+)
XLOC_030121 cyb561a3a coding upstream 153901 27421025 ~ 27429216 (+)
XLOC_030120 hdr coding upstream 168036 27404946 ~ 27415081 (+)
XLOC_030127 adam28 coding downstream 153674 27897504 ~ 27920706 (+)
XLOC_030128 ogfod2 coding downstream 298137 28041967 ~ 28047353 (+)
XLOC_030129 tacr1a coding downstream 416673 28160503 ~ 28213627 (+)
XLOC_030130 ncaph coding downstream 515825 28259655 ~ 28270945 (+)
XLOC_030131 vamp8 coding downstream 527582 28271412 ~ 28279364 (+)
XLOC_030118 NA non-coding upstream 491813 27076003 ~ 27091304 (+)
XLOC_030117 NA non-coding upstream 531658 26949711 ~ 27051459 (+)
XLOC_030114 NA non-coding upstream 676331 26896034 ~ 26906786 (+)
XLOC_030106 NA non-coding upstream 1101816 26479674 ~ 26481301 (+)
XLOC_030094 dre-mir-204-1 non-coding upstream 1610957 25972068 ~ 25972160 (+)
XLOC_030132 NA non-coding downstream 538339 28282169 ~ 28292411 (+)
XLOC_030135 NA non-coding downstream 649518 28393348 ~ 28491518 (+)
XLOC_030136 NA non-coding downstream 754104 28497934 ~ 28503177 (+)
XLOC_030137 NA non-coding downstream 817173 28561003 ~ 28562137 (+)
XLOC_030140 zgc:174260 non-coding downstream 1068623 28812453 ~ 28818613 (+)

Expression


Co-expression Network