XLOC_030172 (pdzd3b)


Basic Information

Item Value
gene id XLOC_030172
gene name pdzd3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 30680804 ~ 30697908 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058995
GGTGTGTTTTGTCCCGTTGCTTGTTCCTCATCTCCCTCATGACTTCAGTTGCAGTGCTGCTGGATGCAATGGAGCTGACGAAGAAGTTTACCTTCAATCCCAAGAAAGGAATAGACAATCCAGTCATGGTTACTGCAGATGAAACAGAGCGAGTGTGGAACCCCACGCCCCGTGTGTGTGTGCTGAGGAGGGAAGAAAAAGAAACCTTTGGCTTCCACCTGCGTGTGGAGAGAGATCGACAGGGTCACGTCATCCGCCTGCTGGACTCACCGGGCCCGGCGGCACGGAGCGGCCTCAAAGATGGAGACCGTCTGCTGGAGGTCAATGAGGTGTTTGTGGAAAACTTGGAGCACACAGAGGTGAGCGGATCACAGATATGTTTTCTGGTGCTGGATGAAAAGGCCTATGAGCAGGTAGTGTCTGAGGGACGTGATCTCCGAGAGATGGCTAAAGCCGCCCGTGGAGAAGGATGGAGGCCACCTCGTCTTTGCCACATCAGGAAAGATGCACATGGCATGGGATTCAACATACTGCCGGTGGAAGGTGAGAAAGGGAAATTCGCAGTGAGCCCAGTTAAAAGAGGTGCTGCCGAGAGGGCAGGAGTGAGGAAAGGAGACCACTTAATCTGGATTGATGGTGCCATGGCCTCTGAACTCACACATTCTGCCATCAGCAAAATGGTGAAAAAGTGCAGCAGTCACATGACAGTGCTGGTGATTGACAGTGACACTGAGAAGAGTTATGCCCGCCGCAAAATGCCAATTCTCCCAGCCATGGCTGATGCAGAAAAAATGCCGTATCGGCCTCAGAGACTGCATCTGGTGATGGGGCCTGATGGATACGGCTTTCTGCTCAGACAGGAGAAGGGTGGAGCTGGACGCACCGTTCACATGGTGAGAGAGGTGGATAAGGGCAGCCCTGCTGAACTGGGAGGAGTCAAAGAAGGTGAGATGCTTCTTGAAGTGAATGGAGAGTCCACAGACCCACTGAGCCATGAAGATGTTGTCAGCAATATCCGACAAAGTGGACAGCAGGTCACCCTAACTACGATGACACCTCAGGGTTATGACTTCTACACTAAGTTGGGTCTCTCTCCCTTGCTGTTCTGTGTGGATGTCCCATCTGCCATCCCTGAGGTAAAAAAGGAAATCCCAGTGACGCCAAAGCCTGCAGTGCCTCCTGTTGAGCCTCAGGAGGAGGTGCAGATCAACCCTAATGTTAGACGCTGTATACTGGAGAGGGGCTCGGCTGGTTTTGGCTTCCATTTGGGCTGCGTCCAACAGAAACCTGGCACCTTCATCAGCCAGGTAGCGGCAGGCGGTCCAGGACAGAGTTCAGGTCTCTTTCAAGGTGATGTGGTGGTGGAGGTGAACGGACAAAATGTGGAGAAAGAGTCTTTGGAGGATGTGATCATGCATGTGAAGAGAGGAGGAGAAACCCTTTCTTTACTGGTCGTTGATCAAAAAGGTTATGATTGGCTGAAGCAGAACGGGAAGCCAGTCACACTAAACAAATTAGAAACAATCTCTGAGGTGGAGGAAAGTGTTTCAAGTTCTGCTGAACCAGCAAGAGTGAAGACCGGTGACTCTGATGGCCAGACTTTGTCCATTTAGTTTCATTTAGGATGAGCATTTAAACAGACCTGATATTGTCCATTAGATCGATGCATTGAGGATGAGGAATAAACAGAGATCCACTGGTTGGCTAATTTCTCTGACCAATAGCCATACTACACTTTGCACTTTGCCGTTTTTAACGATTGGAAACACTCACAATTTTGAGAGCATATGTGTGTCTGAATAGTTAAATCAGTATGACTGTGGCATAAAGACATTTATTTATGTGTCTCTGAGAAGTATTATTTCTTTGATATTACTGTTGTATTCACTATGTTTTTGCCAGGTTATGACCTTTATGAGTTATGAAACTATTTAAGCATTGTATCATTTCATCCTGAATAAAGTATGATTAAAATG
>TCONS_00058996
AGCGAGTGTGGAACCCCACGCCCCGTGTGTGTGTGCTGAGGAGGGAAGAAAAAGAAACCTTTGGCTTCCACCTGCGTGTGGAGAGAGATCGACAGGGTCACGTCATCCGCCTGCTGGACTCACCGGGCCCGGCGGCACGGAGCGGCCTCAAAGATGGAGACCGTCTGCTGGAGGTCAATGAGGTGTTTGTGGAAAACTTGGAGCACACAGAGGTGGCCCGTTGGATACAGGTGAGCGGATCACAGATATGTTTTCTGGTGCTGGATGAAAAGGCCTATGAGCAGGTAGTGTCTGAGGGACGTGATCTCCGAGAGATGGCTAAAGCCGCCCGTGGAGAAGGATGGAGGCCACCTCGTCTTTGCCACATCAGGAAAGATGCACATGGCATGGGATTCAACATACTGCCGGTGGAAGGTGAGAAAGGGAAATTCGCAGTGAGCCCAGTTAAAAGAGGTGCTGCCGAGAGGGCAGGAGTGAGGAAAGGAGACCACTTAATCTGGATTGATGGTGCCATGGCCTCTGAACTCACACATTCTGCCATCAGCAAAATG

Function

symbol description
pdzd3b Predicted to enable protein-membrane adaptor activity. Predicted to be involved in protein localization to plasma membrane. Predicted to act upstream of or within ion transport and receptor guanylyl cyclase signaling pathway. Predicted to be active in apical plasma membrane. Orthologous to human PDZD3 (PDZ domain containing 3).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0006811 ion transport biological_process
GO:0007168 receptor guanylyl cyclase signaling pathway biological_process
GO:0005575 cellular_component cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0030251 guanylate cyclase inhibitor activity molecular_function
GO:0043495 protein-membrane adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-151 Predicted to enable protein-membrane adaptor activity. Predicted to be involved in protein localization to plasma membrane. Predicted to act upstream of or within ion transport and receptor guanylyl cyclase signaling pathway. Predicted to be active in apical plasma membrane. Orthologous to human PDZD3 (PDZ domain containing 3).

Ensembl:

ensembl_id ENSDARG00000055656

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058995 False 1976 mRNA 0.48 10 30680804 30697908
TCONS_00058996 True 551 mRNA 0.55 3 30682737 30694260

Neighbor

gene id symbol gene type direction distance location
XLOC_030171 abcg4a coding upstream 8322 30624183 ~ 30672482 (+)
XLOC_030170 hinfp coding upstream 68075 30596477 ~ 30612729 (+)
XLOC_030169 dpagt1 coding upstream 85432 30588856 ~ 30595372 (+)
XLOC_030168 hmbsa coding upstream 146378 30518036 ~ 30534426 (+)
XLOC_030167 stk36 coding upstream 269639 30392148 ~ 30411165 (+)
XLOC_030173 atp5l coding downstream 1352 30699260 ~ 30701891 (+)
XLOC_030174 BX276103.2 coding downstream 25221 30723129 ~ 30727648 (+)
XLOC_030175 ftr83 coding downstream 43822 30741730 ~ 30753167 (+)
XLOC_030176 ruvbl2 coding downstream 61324 30759232 ~ 30770807 (+)
XLOC_030177 NA coding downstream 82522 30780430 ~ 30974079 (+)
XLOC_030164 BX897688.1 non-coding upstream 514232 30166456 ~ 30166572 (+)
XLOC_030162 dre-mir-125b-2 non-coding upstream 681957 29998762 ~ 29998847 (+)
XLOC_030161 dre-let-7a-4 non-coding upstream 690260 29990452 ~ 29990544 (+)
XLOC_030160 mir100-2 non-coding upstream 690583 29990147 ~ 29990221 (+)
XLOC_030159 NA non-coding upstream 692373 29902153 ~ 29988431 (+)
XLOC_030178 NA non-coding downstream 254315 30952223 ~ 30954521 (+)
XLOC_030185 CR759893.1 non-coding downstream 850404 31548312 ~ 31548787 (+)
XLOC_030191 NA non-coding downstream 1206939 31904847 ~ 31912078 (+)

Expression


Co-expression Network