XLOC_030179 (ube2g1a)


Basic Information

Item Value
gene id XLOC_030179
gene name ube2g1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 30986512 ~ 30995108 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059007
AGAATGTTGAGCAAAACGGACTAGAACAGAGACGGGAAGACGCGCAAGCAAATTCAAACATATTTTTTCTCCTTGTCGAGGTGAACGTCTGTCGACCTAGAATATAACTTATAAAAACATGACGGAGCCCCAGTCAGCACTGTTACTCAGGAGACAGCTAGCAGAACTGAATAAAAATCCTGTGGAAGGTTTCTCAGCCGGTTTGATAGATGATAATGACCTCTACAGATGGGAAGTACTAATAATTGGTCCTCCTGATACACTCTATGAGGGTGGTGTCTTTAAAGCCCATCTTACATTTCCCAAAGACTATCCTCTCAGGCCTCCTAAAATGAAGTTCATTACAGAAATATGGCATCCAAATGTTGACAAGAATGGTGATGTTTGTATTTCGATATTGCACGAACCCGGGGAGGATAAATATGGCTATGAGAAACCAGAAGAGCGCTGGCTCCCCATCCATACTGTAGAGACCATCATGATTAGCGTCATCTCTATGCTAGCAGACCCCAATGGAGACTCCCCTGCCAATGTTGATGCAGCAAAAGAGTGGAGGGAAGACAGACATGGTGAATTCAAAAGAAAAGTTGCCCGCTGTGTAAGAAAGAGCCAAGAGACTGCCTTCGAGTGATATACATCTAGCAGCTTGTAGCTTCACTATTTTCAGGGTCTCCAGTTGAGAAACAACATGGCACTGTTTTCTTGCACTCTACCACCCTATTGCTGGACTGGTTTTCATTGAATGTTGGCAGTAACAGACTGGCATTAATAGGCTGCAATAGAACATAAGGCCATCACCGATGCTGACAGAACACACCAAGCAAGTgccaacaaaaaaagagaaaaatacaaCTTCAAAACaattacgcttttttttttttctttttttttcttttttttttttcaagtttatgAACTGATACAACTTTTCAGGAAGAGATTGTAAAGATGTGTACATAGCACAGACATAAGAACCGGATAATATATAATAACTTGTTCCTATCCATCCAGCAAGACTTAGtaccaaataaaaatagcagttcTGTAGTTAGAGTGTGACATCATGTAAAGTTTCTCGAAGAGTCTAGTTCATCTCCCCCTCCTGCCACCTCACAGGTGCGACTGCCTGTCGGTTTGAACAAAAGTCTGCTTTGGCTATTCTCACTCCTTGCGGTTTAAGGTGGCGAAGGCAGGGGTAAGCTATGGTTAGGATTCAAAGCATGCACGTGATGTTGGACAGCTTTCTCACTCGGGACACTTCAGGTAAAAATAGCTGTAAAGCACGGTCATTTTCTTAAGAATTAGGGGTCATGAAGGTCCTTCTCTGATTTGGTTTTTAAATAGGGTGGGTGGGGGTTGCTCTTACTTTGGATGACTGCTTTCTGAGTGTCAGATTCTcacctttgctttttttttttttttgtccatttgaGGCGGGGAGGAAATGGCAAGGAAACCCATCAGATgtgattttcttctttttcctgcatgttttaagtttttctttcctgtttttttttttttttttcaaaagtgccTCCAATTTAAATCGCTTGGCTCATTACATGCCCTGCATCAAATGGGAGCTAAAGGGAGGAACGTGATTTAAAAACTGCTCAACATCCTCTCAagcttgtgtgaatgtgtgaggtTTATTTTTCTTCATAACCTTCTTACCAGCATTCTGGATTCTTTTGGTGTAGCAATAACTCTGCTTTGCCCACTTTGTGCGGACATCTCAAATTGGACATTCATGTAAGATTTCTAGTAAAGATTCTCCCCTTTATCAGAGCAGTTTTTTTCATGCTTGACATCTTTTGTGTGGTTTCTTTGATAGGTTTCTTAGCCATGCTTTAAATGTAGATTTCTTGCAGACGTTTTCTGGGATTTCAGATGTGTGTTTAAGGGAGATTGAGTAAAATTGTCATGAAGaggcgtgtgtgtgcgtgtgaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgcctgtGTCCCACTCTCTTCCCACAATCTTTAGTTCTCTGGTTAATTTTATTCTGGCTCTGACAGACTACTGCATTTCTTTTGCCTAATGTACAAAGACAAAATACCGATGTATATTTTTCATGTTATGGAAATTGTCACCTCTAGTAAGTtcttctaaaatataatttttttccaataC

Function

symbol description
ube2g1a Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Orthologous to human UBE2G1 (ubiquitin conjugating enzyme E2 G1).

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6065 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Orthologous to human UBE2G1 (ubiquitin conjugating enzyme E2 G1).

Ensembl:

ensembl_id ENSDARG00000015292

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059007 True 2172 mRNA 0.40 6 30986512 30995108

Neighbor

gene id symbol gene type direction distance location
XLOC_030177 NA coding upstream 12433 30780430 ~ 30974079 (+)
XLOC_030178 NA coding upstream 31991 30952223 ~ 30954521 (+)
XLOC_030176 ruvbl2 coding upstream 215705 30759232 ~ 30770807 (+)
XLOC_030175 ftr83 coding upstream 233345 30741730 ~ 30753167 (+)
XLOC_030174 BX276103.2 coding upstream 258864 30723129 ~ 30727648 (+)
XLOC_030180 ankfy1 coding downstream 1214 30996322 ~ 31030840 (+)
XLOC_030181 zzef1 coding downstream 41803 31036911 ~ 31109968 (+)
XLOC_030182 atp2a3 coding downstream 172988 31168096 ~ 31269354 (+)
XLOC_030183 camkk1a coding downstream 288468 31283576 ~ 31432727 (+)
XLOC_030184 si:dkey-220k22.1 coding downstream 485234 31480342 ~ 31591000 (+)
XLOC_030164 BX897688.1 non-coding upstream 819940 30166456 ~ 30166572 (+)
XLOC_030162 dre-mir-125b-2 non-coding upstream 987665 29998762 ~ 29998847 (+)
XLOC_030185 CR759893.1 non-coding downstream 553204 31548312 ~ 31548787 (+)
XLOC_030191 NA non-coding downstream 909739 31904847 ~ 31912078 (+)
XLOC_030192 NA non-coding downstream 915895 31911003 ~ 31918136 (+)
XLOC_030198 NA non-coding downstream 1088621 32083729 ~ 32086577 (+)
XLOC_030204 NA non-coding downstream 1265055 32260163 ~ 32264060 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_06208270_06213269 UBE2G1A, UBE2G1 coding CI01000339 null 6208270 ~ 6214195 (+)
bowfin (Amia calva) AMCG00005621 UBE2G1,ube2g1a,ube2g1,LOC107597432 coding CM030142.1 CM030142.1 5479508 ~ 5489570 (+)