LOC118938176 (LOC106592614)


Basic Information

Item Value
gene id LOC118938176
gene name LOC106592614
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7682966 ~ 7689906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940090.1
ATATATGAACCATCCTGTTAACACAGAGGTGTATGTGGTTTTATGCATATTGTTTCAGGTctgcaggtgaaggtgactccttctgcagagggacagaagacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacATCTAGATGAGAGCACCTCCCCCCAGTACAAAGACCCAGTCTCCAGTAACTATGAAGACAgttactcctgtgctgtaaaagGCCATGAGGATCTCCACTCTCCTGCAGTTTGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGAGTCAACAGTGGACATATCCTGTACTTATGTTGGTTATTATTCCACCACATCATCATTCTGGCTTAGAAGTGATAAGTCGACCCCTGAAGACCTAACCACAGACCCAGGGTATGCAGGTCGTGTGGAGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGAGTATCGCTTCACTTTTAAAGCAAACAACTTTGAATGGGGTCATAGTTTCCCAGGAAcaactctgtctgtcacagGTctgcaggtgaaggtgactcctgctgcagagggacagaagacactgacctgtatcaccacctgtactctgactgacaaccccacctacatctggtacaagaacggacaacGTCTAGATGGGCCCACTTCCCAACAATACTCTAGTAATATCCTAGTAGTGTTGGGTCATTCTGTAGACAGTTACTCCTGTACTGTAGAACACCATGAGGACCTCcactctcctgcagtgtATGCTCCAAGGAAcacctcagtgtcagtcagtccctctggtgaaatagtggagggcagttcagtgactctgacctgcagcagtgatgccTACCCACCTGTGGACAAATACACCTGGTACAAGAAGAACGTAACCTCACCAAAAGCATCAGGACAGAGTTACAGCATCACTAACATCCTctctgaggacagaggagaatatTACTGTGAGGCCCAGAATGGAAGAGGATCTATGAACTCTACAGCTCTGATGATCATTGTAGCAGGGAAACAAACATCAGTTGTGACTGCAGCTGTAGGAATCATAGTGGTTGTTCTGGTTCTCATCCTCTGTTTCTCTGGATTCATGTGGTTCAGGAGATCCACAGGAGGAAGTAATGCCACAGCAGACACACAGagtgtCCGTCCTGACTGTAACAGTGACACGTACACAGCTCTGAACATGAGGACCTTGTCCCCTGACTACGACACTCTGATAAGTGTCCATCCTGACCCTAACAGTGATACGTACACACCTCTGAACATGAAGACCAGGTCACCAGAGTATGACACCCTGGcaAATGTGAGGGGAATCTCCCACTGAAGAGTATcaccacagaacctggactgaagagaacaaccacagatcctggactgaagagagGCACCATagatcctggactgaagagaagcaCCATagatcctggactgaaga

Function

NR:

description
uncharacterized protein LOC110494997

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940090.1 True 1536 mRNA 0.48 9 7682966 7689906

Neighbor

gene id symbol gene type direction distance location
LOC110494997 LOC106598058 coding downstream 11107 7625152 ~ 7671859 (-)
LOC118938521 NA coding downstream 28792 7578674 ~ 7699845 (-)
LOC118938178 LOC106601621 coding downstream 115025 7566947 ~ 7567941 (-)
LOC118938177 LOC106591664 coding downstream 118133 7530063 ~ 7564833 (-)
LOC110493317 LOC106591490 coding upstream 24467 7714373 ~ 7733873 (-)
LOC118938522 LOC106591490 coding upstream 44139 7734045 ~ 7736476 (-)
LOC118938183 LOC106591333 coding upstream 236027 7925933 ~ 8006473 (-)
LOC110485610 hoga1 coding upstream 369035 8058941 ~ 8080347 (-)
LOC110518530 LOC106591329 coding upstream 408603 8098509 ~ 8119143 (-)
G1140457 NA non-coding downstream 1300 7499202 ~ 7681666 (-)
G1140367 LOC106601621 non-coding downstream 2445 7409260 ~ 7695746 (-)
G1140499 NA non-coding downstream 10853 7665917 ~ 7672113 (-)
G1140498 NA non-coding downstream 14967 7665711 ~ 7667999 (-)
G1140461 NA non-coding downstream 36122 7515289 ~ 7646844 (-)
G1140504 NA non-coding upstream 6641 7696547 ~ 7710867 (-)
G1140526 NA non-coding upstream 60888 7750794 ~ 7751003 (-)
G1140531 NA non-coding upstream 67031 7756937 ~ 7761076 (-)
G1140558 NA non-coding upstream 139217 7829123 ~ 7829555 (-)
G1140559 NA non-coding upstream 143465 7833371 ~ 7833723 (-)
G1140368 LOC106591490 other downstream 22645 7659697 ~ 7730493 (-)
LOC110493310 LOC106591489 other downstream 178267 7490185 ~ 7534632 (-)
G1140343 NA other downstream 436316 7245712 ~ 7246650 (-)
G1140323 NA other downstream 490723 7190696 ~ 7192243 (-)
G1140269 NA other downstream 640446 7038877 ~ 7042520 (-)
G1141490 NA other upstream 641229 8331135 ~ 8332518 (-)
G1141517 NA other upstream 736707 8426613 ~ 8452319 (-)
G1141579 NA other upstream 901059 8590965 ~ 8592898 (-)
ncf4 p40phox other upstream 969653 8655106 ~ 8696718 (-)

Expression


Co-expression Network