XLOC_030189 (zdhhc12b)


Basic Information

Item Value
gene id XLOC_030189
gene name zdhhc12b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 31819436 ~ 31826573 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059026
TTGCTCTTTCAACACCCAGTCATCATCACATGCTTTAGATGCTTCCTAAAACTTTATGCTAGGATGTTCAAAAATGTGTTCGGTTCAGGATTTCTGGTGAGGACCGCTCATGTCATTTTGACATGGGTTATAACGCTGATTCTCTTCCTACACGACACCGACCTGCGCCGGCAGGAGGAGACTGGGGAGCTCACACTGCCGGTTCTCTTTGTGCTGCTGGTTCTGGTGTCTGTGTTGCTGTACTTTGCGGTCTCACTCATGGATCCTGGTTTTGTCCTGACTGATGACTGTGACTTGCAGTTCACACTTGGTATCGCAGAAGAAACACAGGATATGATTCCACAGACCACCAAATCCATACGACTGCGGCGCTGTGGACACTGTCTGGTGCAGCAACCGATGAGATCGAAACACTGCCAGACGTGTCAGCACTGTGTGCGTCGCTATGATCACCACTGCCCCTGGATCGAGAACTGCGTCGGGGAGAGGAACCATCGCTGGTTTGTGCTTTATCTGGCCGTCCAGTTTGTGGTCTTGCTGTGGGGACTGTACATGGCTTGGTCAGGCTTCAGTCACGCCTCCACCTGGCAGCAGTGGTTGAGGACTAACGGTGTTCTCCTGGGAGCAGCAGCAGTGGTTGCCATTTTGGCCCTCACCGTGCTCCTCCTCCTGGGCTCGCACCTCTACCTGGTGTCCTTAAACACCACCACATGGGAGTTCATGTCCCGACACAGAATCTCATACCTCAAGCACTGCGGTGCAGACGAAAACCCTTTTGACAAAGGAATCCTGCGCAATCTCTGGGGCTTCTTCTGCGCTTGGGAACCGGTGGTTTGGGAGCACGTTTACTTCAAGCAGGGCAATGATCCCATTTGA
>TCONS_00059027
AGGAAACATGACATGTACCCGTCCTCACATCTAAGCTGCGGAACGGCATCAACAAGCTTATTAGAGCGAAAGAAACACAGAATACTGAAGTACCGCCGTTTCGGTTGAATCACAATGTTATAGCCGTCTCCATTAGGCGTGCAGCATACGAACCCCGACGCCAGGGGACAAATATCCCGGTCAGAAATGGTTGTTGTTGTGGAATTTAGCGCAGGACGCGTAGGAGCGCACTTGACAGCTGGAATGTAACGTTAACTGGTTTCTGATGAGCTCGAGCAGGCTAACAAACACAGCTAGCTGATGATTACAGCTCTTATGACAATGTGTTTCTTTGCGAGTGCACAGCAGACGCATGCTTAGCAGGATATAGAAGTATGCTAGGATGTTCAAAAATGTGTTCGGTTCAGGATTTCTGGTGAGGACCGCTCATGTCATTTTGACATGGGTTATAACGCTGATTCTCTTCCTACACGACACCGACCTGCGCCGGCAGGAGGAGACTGGGGAGCTCACACTGCCGGTTCTCTTTGTGCTGCTGGTTCTGGTGTCTGTGTTGCTGTACTTTGCGGTCTCACTCATGGATCCTGGTTTTGTCCTGACTGATGACTGTGACTTGCAGTTCACACTTGGTATCGCAGAAGAAACACAGGATATGATTCCACAGACCACCAAATCCATACGACTGCGGCGCTGTGGACACTGTCTGGTGCAGCAACCGATGAGATCGAAACACTGCCAGACGTGTCAGCACTGTGTGCGTCGCTATGATCACCACTGCCCCTGGATCGAGAACTGCGTCGGGGAGAGGAACCATCGCTGGTTTGTGCTTTATCTGGCCGTCCAGTTTGTGGTCTTGCTGTGGGGACTGTACATGGCTTGGTCAGGCTTCAGTCACGCCTCCACCTGGCAGCAGTGGTTGAGGACTAACGGTGTTCTCCTGGGAGCAGCAGCAGTGGTTGCCATTTTGGCCCTCACCGTGCTCCTCCTCCTGGGCTCGCACCTCTACCTGGTGTCCTTAAACACCACCACATGGGAGTTCATGTCCCGACACAGAATCTCATACCTCAAGCACTGCGGTGCAGACGAAAACCCTTTTGACAAAGGAATCCTGCGCAATCTCTGGGGCTTCTTCTGCGCTTGGGAACCGGTGGTTTGGGAGCACGTTTACTTCAAGCAGGGCAATGATCCCATTTGATTCCCTGGGTGTCGTGATGTCCCTGACGTATAACCAATAAGACGGAAGTTGATATTTTATTAGCGGGAAACTTCTTTAAACTTTGCAGGACGTCTACTTCGGTTTCCTTGTGAATGATCCATTTGGAAAGTGTTTCTTAAATGCATGAACTTTGTAGTTGCGATGATGTGATGATCAAGTGTTATCAAATGATGAGTGTTTTTATAAAAGGTGTTTTGCGAATTCTTTACCAGTACTTTGACAATTGTGCtgatttttgcacatttttaaagcaaacacagaacaaaaagcacaa

Function

symbol description
zdhhc12b Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC12 (zinc finger DHHC-type palmitoyltransferase 12).

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0018230 peptidyl-L-cysteine S-palmitoylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016409 palmitoyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-356 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC12 (zinc finger DHHC-type palmitoyltransferase 12).

Ensembl:

ensembl_id ENSDARG00000052787

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059026 False 876 mRNA 0.53 6 31819436 31826278
TCONS_00059027 True 1490 mRNA 0.49 5 31820264 31826573

Neighbor

gene id symbol gene type direction distance location
XLOC_030188 uap1l1 coding upstream 2041 31811662 ~ 31817395 (+)
XLOC_030187 slc25a25b coding upstream 12823 31779911 ~ 31806613 (+)
XLOC_030186 si:dkey-220k22.3 coding upstream 211727 31605322 ~ 31607709 (+)
XLOC_030184 si:dkey-220k22.1 coding upstream 228436 31480342 ~ 31591000 (+)
XLOC_030185 CR759893.1 coding upstream 270649 31548312 ~ 31548787 (+)
XLOC_030190 iscub coding downstream 33470 31860043 ~ 31868847 (+)
XLOC_030191 NA coding downstream 78274 31904847 ~ 31912078 (+)
XLOC_030192 NA coding downstream 84430 31911003 ~ 31918136 (+)
XLOC_030193 ungb coding downstream 117697 31944270 ~ 31952788 (+)
XLOC_030194 myo1hb coding downstream 133381 31959954 ~ 31981195 (+)
XLOC_030177 NA non-coding upstream 845357 30780430 ~ 30974079 (+)
XLOC_030178 NA non-coding upstream 864915 30952223 ~ 30954521 (+)
XLOC_030174 BX276103.2 non-coding upstream 1091788 30723129 ~ 30727648 (+)
XLOC_030164 BX897688.1 non-coding upstream 1652864 30166456 ~ 30166572 (+)
XLOC_030198 NA non-coding downstream 257156 32083729 ~ 32086577 (+)
XLOC_030204 NA non-coding downstream 433590 32260163 ~ 32264060 (+)
XLOC_030206 NA non-coding downstream 532307 32358880 ~ 32367481 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_06728344_06732901 ZDHHC12 coding CI01000339 null 6728344 ~ 6732938 (+)
bowfin (Amia calva) AMCG00019980 NA coding CM030127.1 CM030127.1 5118160 ~ 5132090 (+)