XLOC_030190 (iscub)


Basic Information

Item Value
gene id XLOC_030190
gene name iscub
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 31860043 ~ 31868847 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059028
GATTCAAGTGCGTCATTCTGAAATCATGGCGGCGTCGCTGGCGAAGAAGTGCGCTGCTCCGCAAATCCTCAAAACACTTTCAGCTCCAACCTTGAGGACGCAGATTGGGTATCACAAAAAGgtcGTGGACCACTATGAGAATCCAAGAAATGTAGGATCTTTGGATAAAAATGCTAAGAATGTTGGCACCGGGTTGGTTGGTGCCCCTGCATGTGGAGATGTGATGAAACTTCAGGTCGAGGTGGATGAAGCTGGGAAGATTGTGAATGCAAAGTTCAAAACTTTTGGCTGTGGCTCTGCTATTGCTTCCAGCTCTTTGGCTACCGAGTGGGTGAAAGGCAAATCTGTCGATGAGGCCCTCAAGATAAAAAACACTGAGATCGCTAAAGAGCTTAGCCTTCCTCCAGTCAAACTGCACTGCTCGATGCTGGCAGAGGATGCTATTAAAGCAGCTTTGGCCGACTACCGCCTGAAACAGGAAGGTGAACCGGTTGAGGAGACAGCTGTGGCCCGCAACTAGGAGGCACATTTGATcctttaaatcagtggttctcaactggtgcTTAACAACCAAATGGGGTTTCAGATCGGCTCGGATTGGGTCATGGGCAATAGAGAATTGAAACTACTAAATGCCAGTATCAAAATGTGATCAAATATACATGGTTATTGTTCTCTTGGAAGAGAAAAAGGCAGTTTTATTGTGTGATTGATTTTGCGTATTGTTGGGTCGACATTGTTTATTCTGAAACATCATTTAGGTCTTGAAAGCCATTTGAGAAATCCTTGTGATAAGTTTAGACCAAAGCTCTCCAACTCTTGCACTGTAGCCAGTCTTTTAAACGCACAATATAAAAGCACTGAATGTTACTGTCTAATATTAGTTGTAATGAAAAAATGTGGTTTCACTTGCTAGCTGAATACGCACAcagattattttattgtattatgttaGTTTGAAGGGACAGAAACATGATTGTGTTGGTGATTTATGCTGCTGAGATTGTATTTGATGGCCTTTCAAACATTATTAGCTTTAAAATAAAGCATATGTAAAACTGAA
>TCONS_00059029
CGTCATTCTGAAATCATGGCGGCGTCGCTGGCGAAGAAGTGCGCTGCTCCGCAAATCCTCAAAACACTTTCAGCTCCAACCTTGAGGACGCAGATTGGGTATCACAAAAAGGTCGAGGTGGATGAAGCTGGGAAGATTGTGAATGCAAAGTTCAAAACTTTTGGCTGTGGCTCTGCTATTGCTTCCAGCTCTTTGGCTACCGAGTGGGTGAAAGGCAAATCTGTCGATGAGGCCCTCAAGATAAAAAACACTGAGATCGCTAAAGAGCTTAGCCTTCCTCCAGTCAAACTGCACTGCTCGATGCTGGCAGAGGATGCTATTAAAGCAGCTTTGGCCGACTACCGCCTGAAACAGGAAGGTGAACCGGTTGAGGAGACAGCTGTGGCCCGCAACTAGGAGGCACATTTGATcctttaaatcagtggttctcaactggtgcTTAACAACCAAATGGGGTTTCAGATCGGCTCGGATTGGGTCATGGGCAATAGAGAATTGAAACTACTAAATGCCAGTATCAAAATGTGATCAAATATACATGGTTATTGTTCTCTTGGAAGAGAAAAAGGCAGTTTTATTGTGTGATTGATTTTGCGTATTGTTGGGTCGACATTGTTTATTCTGAAACATCATTTAGGTCTT
>TCONS_00059030
GCGGCGTCGCTGGCGAAGAAGTGCGCTGCTCCGCAAATCCTCAAAACACTTTCAGCTCCAACCTTGAGGACGCAGATTGGGTATCACAAAAAGgtcGTGGACCACTATGAGAATCCAAGAAATGTAGGATCTTTGGATAAAAATGCTAAGAATGTTGGCACCGGGTTGGTTGGTGCCCCTGCATGTGGAGATGTGATGAAACTTCAGGTCGAGGTGGATGAAGCTGGGAAGATTGTGAATGCAAAGTTCAAAACTTTTGGCTGTGGCTCTGCTATTGCTTCCAGCTCTTTGGCTACCGAGTCGATGAGGCCCTCAAGATAAAAAACACTGAGATCGCTAAAGAGCTTAGCCTTCCTCCAGTCAAACTGCACTGCTCGATGCTGGCAGAGGATGCTATTAAAGCAGCTTTGGCCGACTACCGCCTGAAACAGGAAGGTGAACCGGTTGAGGAGACAGCTGTGGCCCGCAACTAGGAGGCACATTTGATcctttaaatcagtggttctcaactggtgcTTAACAACCAAATGGGGTTTCAGATCGGCTCGGATTGGGTCATGGGCAATAGAGAATTGAAACTACTAAATGCCAGTATCAAAATGTGATCAAATATACATGGTTATTGTTCTCTTGGAAGAGAAAAAGGCAGTTTTATTGTGTGATTGATTTTGCGTATTGTTGGGTCGACATTGTTTATTCTGAAACATCATTTAGGTCTTGAAAGCCATTTGAGAAATCCTTGTGATAAGTTTAGACCAAAGCTCTCCAACTCTTGCACTGTAGCCAGTCTTTTAAAC
>TCONS_00059031
gactaagccgacaagaaaatgaatgaatgaaaaaattaacTCATCAATAGATACATTCTAGAATGAATTGCAGTAGCACAATTATTTCATATATAAGATCAGTCTGCAAATCAGTTCAAATACTGATGATTAAAAACTTTCTGCAGTTTATTCAAGCATTATATGCATTAGTAGTCCACATTGTTTGTACTcaagtttgcttttgctttttcccACCTAGGTCGAGGTGGATGAAGCTGGGAAGATTGTGAATGCAAAGTTCAAAACTTTTGGCTGTGGCTCTGCTATTGCTTCCAGCTCTTTGGCTACCGAGTGGGTGAAAGGCAAATCTGTCGATGAGGCCCTCAAGATAAAAAACACTGAGATCGCTAAAGAGCTTAGCCTTCCTCCAGTCAAACTGCACTGCTCGAGTAAGAATTTTAATGTTCATCTTTGCCTTACATTATTTACTAGTGTTATGATTGCTGTTCAGGTTGATAACAGTGACCCATATTATTTCTACTGTtaagatgtttctttttttgtagCTGACCTTGTTCTCTGTTATGCAGTGCTGGCAGAGGATGCTATTAAAGCAGCTTTGGCCGACTACCGCCTGAAACAGGAAGGTGAACCGGTTGAGGAGACAGCTGTGGCCCGCAACTAGGAGGCACATTTGATcctttaaatcagtggttctcaactggtgcTTAACAACCAAATGGGGTTTCA

Function

symbol description
iscub Predicted to enable 2 iron, 2 sulfur cluster binding activity and ferrous iron binding activity. Predicted to be involved in cellular iron ion homeostasis. Predicted to act upstream of or within iron-sulfur cluster assembly. Predicted to be active in mitochondrial matrix. Orthologous to human ISCU (iron-sulfur cluster assembly enzyme).

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0008198 ferrous iron binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-332 Predicted to enable 2 iron, 2 sulfur cluster binding activity and ferrous iron binding activity. Predicted to be involved in cellular iron ion homeostasis. Predicted to act upstream of or within iron-sulfur cluster assembly. Predicted to be active in mitochondrial matrix. Orthologous to human ISCU (iron-sulfur cluster assembly enzyme).

Ensembl:

ensembl_id ENSDARG00000026582

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059028 False 1063 mRNA 0.42 5 31860043 31868847
TCONS_00059029 False 642 mRNA 0.46 4 31860053 31868550
TCONS_00059030 False 797 nonsense_mediated_decay 0.45 5 31860071 31868628
TCONS_00059031 True 711 lncRNA 0.40 2 31867518 31868369

Neighbor

gene id symbol gene type direction distance location
XLOC_030189 zdhhc12b coding upstream 33470 31819436 ~ 31826573 (+)
XLOC_030188 uap1l1 coding upstream 42648 31811662 ~ 31817395 (+)
XLOC_030187 slc25a25b coding upstream 53430 31779911 ~ 31806613 (+)
XLOC_030186 si:dkey-220k22.3 coding upstream 252334 31605322 ~ 31607709 (+)
XLOC_030184 si:dkey-220k22.1 coding upstream 269043 31480342 ~ 31591000 (+)
XLOC_030191 NA coding downstream 36000 31904847 ~ 31912078 (+)
XLOC_030192 NA coding downstream 42156 31911003 ~ 31918136 (+)
XLOC_030193 ungb coding downstream 75423 31944270 ~ 31952788 (+)
XLOC_030194 myo1hb coding downstream 91107 31959954 ~ 31981195 (+)
XLOC_030195 ppp6c coding downstream 114251 31983098 ~ 31995401 (+)
XLOC_030185 CR759893.1 non-coding upstream 311256 31548312 ~ 31548787 (+)
XLOC_030177 NA non-coding upstream 885964 30780430 ~ 30974079 (+)
XLOC_030178 NA non-coding upstream 905522 30952223 ~ 30954521 (+)
XLOC_030174 BX276103.2 non-coding upstream 1132395 30723129 ~ 30727648 (+)
XLOC_030164 BX897688.1 non-coding upstream 1693471 30166456 ~ 30166572 (+)
XLOC_030198 NA non-coding downstream 214882 32083729 ~ 32086577 (+)
XLOC_030204 NA non-coding downstream 391316 32260163 ~ 32264060 (+)
XLOC_030206 NA non-coding downstream 490033 32358880 ~ 32367481 (+)

Expression


Co-expression Network