XLOC_030193 (ungb)


Basic Information

Item Value
gene id XLOC_030193
gene name ungb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 31944270 ~ 31952788 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059032
GGCAGTGGAGATTACAAACAGGAAAGTGAGGGGAGCGGAGAGAGGTAAAGGACTGGCAAAGGACtaagctgggaatcgaactcagGAGGGGTTATCAGTGAGGGTCTCGTTTCTGCTCTGCCTTCATCCATTCATCAGTCTTCTttcagccacagccatatcaccctgcatcCCAAGAACGGTTACTCACTGGAGCTAAGtaggctgagcctgAGCAAGCTAGTGGTGAGAGCATGCAGCTCAGTGAGGAGCAGCTGTGTCAGATAGAGAAGAACAGACGTGCTGCACTGCAAAGACTGGCCAGCCGAAACGTACCTGTGCCTGTTGGAGAAAGCTGGAGAAGACACATTGGGACTGAATTTGCAAAACCATATTTTACAAAACTCATGTCTTTTGTTACAATTGAGAGGAAATGTTCTACTGTTTATCCCAGCCTCGAGCAGGTGTTTTATTGGACAACTTTGTGCGCAATTGAAGATGTAAAAGTTGTTATTCTCGGGCAAGACCCCTATCATCATCCAGGACAGGCCCATGGTTTGGCCTTCAGTGTGCTGAGGCCAAAATCACCTCCTCCCAGTTTGGAAAACATATTTATGGAGCTACAAGAAGACATTGATGGATTCCAGCACCCAGGACATGGAGACCTCACAGAATGGGGTAAACAAGGTGTATTGCTGCTAAATTCTGTGCTGACAGTGAGGGCTCATCAACCCACCTCTCATGAAGGTCGAGGCTGGGAGATCTTCACAGATGCTGTGGTCCTGTGGCTTAGCAGGAACCTCAAAGGCCTGGTCTTCCTGCTTTGGGGTTCATATGCTCAGAAAAAAGGCAGAGTCATTGACAGGAAACGTCATCATGTTCTTGAGACTTCACATCCATCACCGTACTCTGTACATTTAGGCTTTTCTGGATGTAGGCACTTTTCTAAAGCGAATATGTTACTAAAAGCATCAGGAAAGAAGCCAGTTGAATGGACAGCTCTATGAAGTAATATGCAGTTTGTtctttaaaatcctttttttgttgttgttaaacatATCACAGCTGCATACAGCTGCAACTAGGTTGACATTGTGATCATCTTGACGTACTAAAACAATT
>TCONS_00059033
agccacagccatatcaccctgcatcCCAAGAACGGTTACTCACTGGAGCTAAGtaggctgagcctggtcagtaccaggATAGGAGACCAGATGAGAAAattaggttgctgttgaaa
>TCONS_00059034
AGCAAGCTAGTGGTGAGAGCATGCAGCTCAGTGAGGAGCAGCTGTGTCAGATAGAGAAGAACAGACGTGCTGCACTGCAAAGACTGGCCAGCCGAAACGTACCTGTGCCTGTTGGAGAAAGCTGGAGAAGACACATTGGGACTGAATTTGCAAAACCATATTTTACAAAAGTAAGTGATGCTACTCAGTATGAGACTTTAGCAAAATAGCAATGAGCAGGGGAAGTTAGAGAACAAGACTTTAACCTGTTGGTTCTTGTTTTTACAGCTCATGTCTTTTGTTACAATTGAGAGGAAATGTTCTACTGTTTATCCCAGCCTCGAGCAGGTGTTTTATTGGACAACTTTGTGCGCAATTGAAGATGTAAAAGTTGTTATTCTCGGGCAAGACCCCTATCATCATCCAGGACAGGCCCATGGTTTGGCCTTCAGTGTGCTGAGGCCAAAATCACCTCCTCCCAGTTTGGAAAACATATTTATGGAGCTACAAGAAGACATTGATGGATTCCAGCACCCAGGACATGGAGACCTCACAGAATGGGGTAAACAAGGTGTATTGCTGCTAAATTCTGTGCTGACAGTGAGGGCTCATCAACCCACCTCTCATGAAGGTCGAGGCTGGGAGATCTTCACAGATGCTGTGGTCCTGTGGCTTAGCAGGAACCTCAAAGGCCTGGTCTTCCTGCTTTGGGGTTCATATGCTCAGAAAAAAGGCAGAGTCATTGACAGGAAACGTCATCATGTTCTTGAGACTTCACATCCATCACCGTACTCTGTACATTTAGGCTTTTCTGGATGTAGGCACTTTTCTAAAGCGAATATGTTACTAAAAGCATCAGGAAAGAAGCCAGTTGAATGGACAGCTCTATGAAGTAATATGCAGTTTGTtctttaaaatcctttttttgttgttgttaaacatATCACAGCTGCATACAGCTGCAACTAGGTTGACATTGTGATCATCTTGACGTACTAAAACAATTACATAActatataaacacaattaataaatgtatttactgtacTTTGTCAAATTGGGCATACGACCTGTAATTCCATGCACTCACCTGTAGGTAAAATGCTATTTTGATAAAAAAGAGAGTTTAAAgagaatttaaaatgtatttgtggaAAGATAGAAGTTTAGTGAAACATGTTATAAAACACAACCCTCAAATACTGTCTTTTTCATGCACAACCTCATTAGCATTTCCATAAATAGATTTTAATTGACAGTTCAATACTGTTTTTTAACTACATCaaattttgcacaaaaaaaaaattgaaatgtatatttagaTCACAACACTGTGTAGTCCGCCTTGAGCATTTGGGAACGAGGCCAGTCTcacattataaaaaagaaaaaagcaaagaaaaatagGACACTACGACAGCCCATGCAGGGCATGTTTCATAGCGGGATGTCCATAAATCCAGGTGATGCAGCCATAATAAGCAGTGTCCCACTTCAACTCTTCCTGGACCTTTTTTTCTCTTCCACTGGCCGCCAgaacacatacagtacaccaCTGCTCTCTGCACCACTGGCACTACTCCATTCCCCCACAAGACTCTCAACTGCAACAAACCCAACTGGAtcgtattttgttttattttcattaaaacatgTACTGCCTGAACTCTAAGGTAAGTCCTACTTAACAACTATTCACTGTATCGTATGTAGCCAGAGAGCTTATTTCTTGGCAATGGACTTTTGACCTTAACCTAAATTCAATGATATATAGAAATTGCATTACTGTGTGGTGCACATATGTTTAAACTTCCCACATATGTGCTTTTTCTAATGTTGTGCAGGGAATATGATCTTTGGCAGCTACCATCATGGTCATTTTAATCTCTTTGTATTTAAAGAGGGTTGTGTTTAGTTACAAGAAAGCATCGGTTTCAGTACAGTAACAACAAACCTATCAATTAGGTCAAAGGTGGTTGAAGACACTAACTAgtgttataaatattaatatggcCATCTTGTGCTCCTGTGGAATTTTCGATTTATGAATTCCATAAATCATTTTACATCCATCCCATAATTCACCTGTGTGCCTGGTTGATTTGTTAATTGCAAGGCATAAAATACTATAGTTATTTGAAGTGAACCATACTTTAGTAAAAGTAATGTAATTAATCtttttgtggtaattctatagttgctgtgAAGCAATAGAACtgctacagtaatataaacaaattacccaatacTGTAGTGATTTTCAAACAAtggggtattttatactacaccACAGACAGTTtaatgtagtaaaaactaaagtatactacagtttatctgttcactatagttaattctacaataTGCAATGCCATTCATTAATAAAAAGTTGTCAATAGGCCCACtataatatataaagtataacacacacatatacacatacactatagtcCAAAACCACTAATGTTAGTATGgcatatttactataaattattatagttttCTTTTCGTG
>TCONS_00059035
ATGCAGCTCAGTGAGGAGCAGCTGTGTCAGATAGAGAAGAACAGACGTGCTGCACTGCAAAGACTGGCCAGCCGAAACGTACCTGTGCCTGTTGGAGAAAGCTGGAGAAGACACATTGGGACTGAATTTGCAAAACCATATTTTACAAAACTCATGTCTTTTGTTACAATTGAGAGGAAATGTTCTACTGTTTATCCCAGCCTCGAGCAGGTGTTTTATTGGACAACTTTGTGCGCAATTGAAGATGTAAAAGTTGTTATTCTCGGGCAAGACCCCTATCATCATCCAGGACAGGCCCATGGTTTGGCCTTCAGTGTGCTGAGGCCAAAATCACCTCCTCCCAGTTTGGAAAACATATTTATGGAGCTACAAGAAGACATTGATGGATTCCAGCACCCAGGACATGGAGACCTCACAGAATGGGGTAAACAAGGTGTATTGCTGCTAAATTCTGTGCTGACAGTGAGGGCTCATCAACCCACCTCTCATGAAGGTCGAGGCTGGGAGATCTTCACAGATGCTGTGGTCCTGTGGCTTAGCAGGAACCTCAAAGGCCTGGTCTTCCTGCTTTGGGGTTCATATGCTCAGAAAAAAGGCAGAGTCATTGACAGGAAACGTCATCATGTTCTTGAGACTTCACATCCATCACCGTACTCTGTACATTTAGGCTTTTCTGGATGTAGGCACTTTTCTAAAGCGAATATGTTACTAAAAGCATCAGGAAAGAAGCCAGTTGAATGGACAGCTCTATGA

Function

symbol description
ungb Predicted to enable uracil DNA N-glycosylase activity. Predicted to be involved in base-excision repair, AP site formation via deaminated base removal. Predicted to act upstream of or within base-excision repair. Predicted to be active in mitochondrion and nucleus. Human ortholog(s) of this gene implicated in dysgammaglobulinemia and immunodeficiency with hyper IgM type 5. Orthologous to human UNG (uracil DNA glycosylase).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0097510 base-excision repair, AP site formation via deaminated base removal biological_process
GO:0006281 DNA repair biological_process
GO:0006284 base-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004844 uracil DNA N-glycosylase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-360 Predicted to enable uracil DNA N-glycosylase activity. Predicted to be involved in base-excision repair, AP site formation via deaminated base removal. Predicted to act upstream of or within base-excision repair. Predicted to be active in mitochondrion and nucleus. Human ortholog(s) of this gene implicated in dysgammaglobulinemia and immunodeficiency with hyper IgM type 5. Orthologous to human UNG (uracil DNA glycosylase).

Ensembl:

ensembl_id ENSDARG00000094922 ENSDARG00000105923

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059032 False 1101 mRNA 0.46 8 31944270 31951285
TCONS_00059033 False 116 rRNA 0.49 1 31944607 31944722
TCONS_00059034 False 2488 mRNA 0.38 5 31946973 31952788
TCONS_00059035 True 753 mRNA 0.46 6 31946993 31951170

Neighbor

gene id symbol gene type direction distance location
XLOC_030192 NA coding upstream 26134 31911003 ~ 31918136 (+)
XLOC_030191 NA coding upstream 32192 31904847 ~ 31912078 (+)
XLOC_030190 iscub coding upstream 75423 31860043 ~ 31868847 (+)
XLOC_030189 zdhhc12b coding upstream 117697 31819436 ~ 31826573 (+)
XLOC_030188 uap1l1 coding upstream 126875 31811662 ~ 31817395 (+)
XLOC_030194 myo1hb coding downstream 7166 31959954 ~ 31981195 (+)
XLOC_030195 ppp6c coding downstream 30310 31983098 ~ 31995401 (+)
XLOC_030196 scai coding downstream 42895 31995683 ~ 32046297 (+)
XLOC_030197 zmat5 coding downstream 123321 32076109 ~ 32080192 (+)
XLOC_030198 NA coding downstream 130941 32083729 ~ 32086577 (+)
XLOC_030185 CR759893.1 non-coding upstream 395483 31548312 ~ 31548787 (+)
XLOC_030177 NA non-coding upstream 970191 30780430 ~ 30974079 (+)
XLOC_030178 NA non-coding upstream 989749 30952223 ~ 30954521 (+)
XLOC_030204 NA non-coding downstream 307375 32260163 ~ 32264060 (+)
XLOC_030206 NA non-coding downstream 406092 32358880 ~ 32367481 (+)
XLOC_030208 CR376857.1 non-coding downstream 684860 32637648 ~ 32637765 (+)
XLOC_030212 CR925757.1 non-coding downstream 932417 32885205 ~ 32885331 (+)

Expression


Co-expression Network