XLOC_030195 (ppp6c)


Basic Information

Item Value
gene id XLOC_030195
gene name ppp6c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 31983098 ~ 31995401 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059038
GGCTGATCATCTTGTCAATCATCACCACTCTGTGTGACGTAGAAAGACTTCCTCTTCGCGTCTTCCATCGACTGTTGTTCTTAAAATGGCGCCGTTGGACCTGGATAAGTATGTTGAAATTGCGAGGCAGTGCAAATATCTACCAGAGAACGACTTAAAGAGATTATGTGACTATGTATGTGACCTTCTGCTTGAGGAATCAAATGTACAGCCAGTATCCACTCCAGTCACTGTATGCGGGGACATTCATGGACAGttttatgACCTATGTGAACTCTTTAGAACTGGGGGCCAAGTACCAGATACAAACTACATTTTCATGGGTGACTTTGTTGACCGAGGATATTACAGCTTAGAAACATTCACATATTTGCTAGCACTTAAAGCAAAGTGGCCTGACCGCATCACACTGTTGCGTGGCAATCACGAGAGTAGGCAGATTACACAGGTCTATGGCTTTTATGATGAGTGCCAAACTAAATATGGAAATGCTAATGCCTGGCGATACTGCACTAAAGTATTCGACATGCTCACTGTTGCTGCCTTGATAGATGAGCAGATCCTTTGTGTACATGGTGGCCTTTCACCTGACATCAAAACTCTGGACCAGATACGCACCATTGAACGCAATCAGGAGATCCCTCACAAGGGAGCATTTTGTGACCTTGTTTGGTCCGACCCAGAGGACGTGGACACCTGGGCTATCAGTCCAAGAGGAGCTGGCTGGCTGTTTGGTGCTAAGGTCACTAATGAGtTTGTTCACATCAACAACTTGAAGCTGATTTGCCGTGCACATCAATTGGTTCATGAGGGCTACAAATTTATGTTTGATGAGAAGCTGGTGACCGTCTGGTCGGCCCCAAACTACTGCTACCGCTGCGGTAACATTGCCTCCATCATGGTCTTCAAAGACGTCAACACACGGGAGCCCAAGTTATTCCGGGCCGTTCCTGACTCAGAAAGAGTCATACCACCGAGAACGACAACACCCTATTTCCTCTGAGGTCTTCATTGTTGCCTATGTCTCGCCCTCTCCTTTTCATGGTTGTCATGAGCtcttttattgtctttattttctctgtgttgcttttttttttttttttaacaaatatttttgtaaagaTGGAAGTGCTCTCAATAATAACAACAGAAAACTATGGTTACAGTTCTGAACCCTGTTGAAAATGTTTTAAGTTGGTCGTTATTCGGTCAGTATAATCTTGTTAATGTGAGCGTAATGAAGTGAACATCCCCATGCTGTACTTGCAGGCCTTTTAAATGTAGACCTAAGAGCCGTTGACCATTTAATGACAAGCATTTATAGTGTAACACCTCGCCTGATCAGAACAATGTGGTGTTTGTGTTTTTCAGAGCACAGACCAGAAAGAGAGTCACTAAAACAGCTATGTTCTGGTCAGTTTGCTCCCAATTTCTCCAAGACAAAGACACTTTTGTTTTTCGTAGCTTTCAAGTGTTGAAAAGGGTTGAAGCAATGATTAGACAACAGGACAAAGAAGGCTGtgattattttgtacattaatataaattgtattgatttaatcaacttttttttctcagatttgttgtattttattattgtagaAAACGGCAGCCCATTTACCAATTAAATATTGAGAATAAACGCCTTTATTATTAAGTTA
>TCONS_00059039
GTTGGACCTGGATAAGTATGTTGAAATTGCGAGGCAGTGCAAATATCTACCAGAGAACGACTTAAAGAGATTATGTGACTATGTATGTGACCTTCTGCTTGAGGAATCAAATGTACAGCCAGTATCCACTCCAGTCACTGTATGCGGGGACATTCATGGACAGttttatgACCTATGTGAACTCTTTAGAACTGGGGGCCAAGTACCAGATACAAACTACATTTTCATGGTGAAGTATATTACAACAATAATTTTAATTGATGATTTGTGATTAGTACTGCGTTGGAAATTGTTCCACCATCATCTATTGAGGAGACATTGGTATGTTTTCTTTCATCCAGGGTGACTTTGTTGACCGAGGATATTACAGCTTAGAAACATTCACATATTTGCTAGCACTTAAAGCAAAGTGGCCTGACCGCATCACACTGTTGCGTGGCAATCACGAGAGTAGGCAGATTACACAGGTCTATGGCTTTTATGATGAGTGCCAAACTAAATATGGAAATGCTAATGCCTGGCGATACTGCACTAAAGTATTCGACATGCTCACTGTTGCTGCCTTGATAGATGAGCAGATCCTTTGTGTACATGGTGGCCTTTCACCTGACATCAAAACTCTGGACCAGATACGCACCATTGAACGCAATCAGGAGATCCCTCACAAGGGAGCATTTTGTGACCTTGTTTGGTCCGACCCAGAGGACGTGGACACCTGGGCTATCAGTCCAAGAGGAGCTGGCTGGCTGTTTGGTGCTAAGGTCACTAATGAGtTTGTTCACATCAACAACTTGAAGCTGATTTGCCGTGCACATCAATTGGTTCATGAGGGC

Function

symbol description
ppp6c Predicted to enable protein serine phosphatase activity and protein threonine phosphatase activity. Acts upstream of or within response to yeast. Orthologous to human PPP6C (protein phosphatase 6 catalytic subunit).

GO:

id name namespace
GO:0001878 response to yeast biological_process
GO:0005575 cellular_component cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-949 Predicted to enable protein serine phosphatase activity and protein threonine phosphatase activity. Acts upstream of or within response to yeast. Orthologous to human PPP6C (protein phosphatase 6 catalytic subunit).

Ensembl:

ensembl_id ENSDARG00000002949

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059038 False 1661 mRNA 0.42 7 31983098 31995401
TCONS_00059039 True 833 lncRNA 0.43 6 31983191 31994554

Neighbor

gene id symbol gene type direction distance location
XLOC_030194 myo1hb coding upstream 1903 31959954 ~ 31981195 (+)
XLOC_030193 ungb coding upstream 30310 31944270 ~ 31952788 (+)
XLOC_030192 NA coding upstream 64962 31911003 ~ 31918136 (+)
XLOC_030191 NA coding upstream 71020 31904847 ~ 31912078 (+)
XLOC_030190 iscub coding upstream 114251 31860043 ~ 31868847 (+)
XLOC_030196 scai coding downstream 282 31995683 ~ 32046297 (+)
XLOC_030197 zmat5 coding downstream 80708 32076109 ~ 32080192 (+)
XLOC_030198 NA coding downstream 88328 32083729 ~ 32086577 (+)
XLOC_030199 tescb coding downstream 146389 32141790 ~ 32148529 (+)
XLOC_030200 taok3b coding downstream 167283 32162684 ~ 32182728 (+)
XLOC_030185 CR759893.1 non-coding upstream 434311 31548312 ~ 31548787 (+)
XLOC_030177 NA non-coding upstream 1009019 30780430 ~ 30974079 (+)
XLOC_030204 NA non-coding downstream 264762 32260163 ~ 32264060 (+)
XLOC_030206 NA non-coding downstream 363479 32358880 ~ 32367481 (+)
XLOC_030208 CR376857.1 non-coding downstream 642247 32637648 ~ 32637765 (+)
XLOC_030212 CR925757.1 non-coding downstream 889804 32885205 ~ 32885331 (+)

Expression


Co-expression Network