XLOC_030196 (scai)


Basic Information

Item Value
gene id XLOC_030196
gene name scai
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 31995683 ~ 32046297 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059040
AATTCAACTGGCCAGACTGAACCGTCGACCGCAGCAGATGCCGAATGGCAGATACTCCCTGCTTTTCCCTGGGAGGGTGATTTGAATGAGTTGGATGTAAATGACGGTGCGCCACCGCACTGGATGTCTAGATTTGTGTCGGGGAGAGATTTACAAGCGCGCGCTACCCGGAGACGCCGTTCTTGAGGAGCTGAAACAGAAGAAGCTGCTCTGAACTACATCAGTCTCAGcagCTGCCATGACAGGGGTGGGGGCAGAGGATGACATCCCTCTCTGTGAGAGGAAAACTGTCACTGACTTCTGCTATCTCCTGGACAAGTCCAAGCAGCTTTTCAATGGCTTAAGGGATCTGCCTCAATATGGACACAAGCAGTGGCAGTCCTATTTTGGCCGAACGTTTGACGTCTACACCAAGCTGTGGAAGTTTCAGCAGCAGCACAGACAAGTCCTGGACAACCGGTATGGTCTCAAGAGGTGGCAGATAGGTGAAGTGGCCTCAAAAATTGGCCAGTTGTACTACCATTACTACCTCCGCACTTCAGAAACAAGCTACCTAAATGAAGCCTTCTCTTTCTATTCGGCAATTCGCCAACGGTCATATTACCACCAGGTCAACAAAGAAGACAGGCCAGAGCTGGTTGTAAAAAAGCTGAGGTATTACGCTCGGTTTATCGTTGTTTGTCTGTTGCTCAACAAGATGGACCTGGTTAAGGTGTTGGTTAAGGAACTTTCGGAGGAGATTGAGGACTACACCCAGCGCTTCAACACTGAGGACCAGTTAGAGTGGAATCTGGTGCTGCAGGAAGTAGCAGCTTTTGTGGAGGCCGATCCTCTGATGATCCTGAATGATGACAATGCTGTGGTGGTCCTTTCCAATCGGCTGCAGGAGGGAGGTGTGCCCCCTCTGGAGCAGGGCATGGTGGTTGGCCAGCTCACCTTGGCAGATGCTCTCATCGTTGGCAACTGTAATAACCAGGTGAAGTTCAGCGAGCTGACCATCGATATGTTTCGAATGCTTCAAGCGCTTGAGAGGGAACCGGTGAACCTGGCTACGCAAAGCTCCAAACCAGGGACACTTGAGCCCAATGAAAAGCCGGCCAAGAGAGAGAACCCTCATAAATATCTCCTCTACAAACCAACCTTCAGCCAGCTCTACACTTTCCTGTCTGCCTCCTTCAAGGAGCTGCCGGCCAATAGTGTCCTGCTGGTGTATCTCTCTGCCACTGGAGTTTTCCCCACTGGACGCTCTGAGAGTGAAGGACCTTATGACTTTGGAGGTGTCCTGACCAATACTAACCGAGATGTGGTGAATGGTGAGACGGTGCAGAAAAGAAACCAGGCACAAAAAGAGATGCACTGCCTCCACCCAGGAGACCTTTTCCCCTTCACTAGGAAACCTCTGTTTATCATTGTCGACTCCTCCAACAGCACAGCTTATAAGAATTTCTCCAATCTGTTCGGCCAGCCCCTTGTTTGCCTGCTTTCTCCAACAGTATATCCGAAGAGCATGCAAGACCAGTCTCAGCGTGGGAGTCTGTTTACTCTCTTCCTTTACAACCCCCTCATGGGCTTCCTATCTGTCTGTGGACTGAGCAGCATGCGTTATGGATTGTGGGAAAAAGCCCAGGAACTCCTGCGGAAGGTTTTCCATGACATTGGCCAGATGATCACAAGTTCACGAGTTATAGATCAGGCGTATCTGCAGTTTTATGGTGATGAGTTTCTGCGTCTGCTTATGATCCGCTTCGTGTTCTGCTCCTCCGCGCTCCGGTTACACAAGCTCTTCCGGGAAGCGAGGAGTTTTCCAGAATCGTATCCCCCTCTGCCAAAACAGGAGATGGTGGAGAGCAGCCTTCTACAGAAACATGTGCTGGAGCTGGCGGCTATGCTGGACGTGCAAAACCTCTTTTCCGATGGCATGCTGGATAACTATTGA
>TCONS_00059041
ttcattcagaaacatttcatgcatgccccccattaCAAACGAGACGTTGCATgggagtatgaactgctggaagtgtGTTGGGTGGGGGCAGAGGATGACATCCCTCTCTGTGAGAGGAAAACTGTCACTGACTTCTGCTATCTCCTGGACAAGTCCAAGCAGCTTTTCAATGGCTTAAGGGATCTGCCTCAATATGGACACAAGCAGTGGCAGTCCTATTTTGGCCGAACGTTTGACGTCTACACCAAGCTGTGGAAGTTTCAGCAGCAGCACAGACAAGTCCTGGACAACCGGTATGGTCTCAAGAGGTGGCAGATAGGTGAAGTGGCCTCAAAAATTGGCCAGTTGTACTACCATTACTACCTCCGCACTTCAGAAACAAGCTACCTAAATGAAGCCTTCTCTTTCTATTCGGCAATTCGCCAACGGTCATATTACCACCAGGTCAACAAAGAAGACAGGCCAGAGCTGGTTGTAAAAAAGCTGAGGTATTACGCTCGGTTTATCGTTGTTTGTCTGTTGCTCAACAAGATGGACCTGGTTAAGGTGTTGGTTAAGGAACTTTCGGAGGAGATTGAGGACTACACCCAGCGCTTCAACACTGAGGACCAGTTAGAGTGGAATCTGGTGCTGCAGGAAGTAGCAGCTTTTGTGGAGGCCGATCCTCTGATGATCCTGAATGATGACAATGCTGTGGTGGTCCTTTCCAATCGGCTGCAGGAGGGAGGTGTGCCCCCTCTGGAGCAGGGCATGGTGGTTGGCCAGCTCACCTTGGCAGATGCTCTCATCtcatttttttgttgttgcaatgATTGGGTGAAGTTCAGCGAGCTGACCATCGATATGTTTCGAATGCTTCAAGCGCTTGAGAGGGAACCGGTGAACCTGGCTACGCAAAGCTCCAAACCAGGGACACTTGAGCCCAATGAAAAGCCGGCCAAGAGAGAGAACCCTCATAAATATCTCCTCTACAAACCAACCTTCAGCCAGCTCTACACTTTCCTGTCTGCCTCCTTCAAGGAGCTGCCGGCCAATAGTGTCCTGCTGGTGTATCTCTCTGCCACTGGAGTTTTCCCCACTGGACGCTCTGAGAGTGAAGGACCTTATGACTTTGGAGGTGTCCTGACCAATACTAACCGAGATGTGGTGAATGGTGAGACGGTGCAGAAAAGAAACCAGGCACAAAAAGAGATGCACTGCCTCCACCCAGGAGACCTTTTCCCCTTCACTAGGAAACCTCTGTTTATCATTGTCGACTCCTCCAACAGCACAGCTTATAAGAATTTCTCCAATCTGTTCGGCCAGCCCCTTGTTTGCCTGCTTTCTCCAACAGTATATCCGAAGAGCATGCAAGTCATTgttgagatgtatggatgcagttttgcaagcttatgggagtcaaacacaatatga
>TCONS_00059042
CAATTTTCTCTCCTGCCACCACAGAGAGGGGTGGGGGCAGAGGATGACATCCCTCTCTGTGAGAGGAAAACTGTCACTGACTTCTGCTATCTCCTGGACAAGTCCAAGCAGCTTTTCAATGGCTTAAGGGATCTGCCTCAATATGGACACAAGCAGTGGCAGTCCTATTTTGGCCGAACGTTTGACGTCTACACCAAGCTGTGGAAGTTTCAGCAGCAGCACAGACAAGTCCTGGACAACCGGTATGGTCTCAAGAGGTGGCAGATAGGTGAAGTGGCCTCAAAAATTGGCCAGTTGTACTACCATTACTACCTCCGCACTTCAGAAACAAGCTACCTAAATGAAGCCTTCTCTTTCTATTCGGCAATTCGCCAACGGTCATATTACCACCAGGTCAACAAAGAAGACAGGCCAGAGCTGGTTGTAAAAAAGCTGAGGTATTACGCTCGGTTTATCGTTGTTTGTCTGTTGCTCAACAAGATGGACCTGGTTAAGGTGTTGGTTAAGGAACTTTCGGAGGAGATTGAGGACTACACCCAGCGCTTCAACACTGAGGACCAGTTAGAGTGGAATCTGGTGCTGCAGGAAGTAGCAGCTTTTGTGGAGGCCGATCCTCTGATGATCCTGAATGATGACAATGCTGTGGTGGTCCTTTCCAATCGGCTGCAGGAGGGAGGTGTGCCCCCTCTGGAGCAGGGCATGGTGGTTGGCCAGCTCACCTTGGCAGATGCTCTCATCtcatttttttgttgttgcaatgATTGGGTGAAGTTCAGCGAGCTGACCATCGATATGTTTCGAATGCTTCAAGCGCTTGAGAGGGAACCGGTGAACCTGGCTACGCAAAGCTCCAAACCAGGGACACTTGAGCCCAATGAAAAGCCGGCCAAGAGAGAGAACCCTCATAAATATCTCCTCTACAAACCAACCTTCAGCCAGCTCTACACTTTCCTGTCTGCCTCCTTCAAGGAGCTGCCGGCCAATAGTGTCCTGCTGGTGTATCTCTCTGCCACTGGAGTTTTCCCCACTGGACGCTCTGAGAGTGAAGGACCTTATGACTTTGGAGGTGTCCTGACCAATACTAACCGAGATGTGGTGAATGGTGAGACGGTGCAGAAAAGAAACCAGGCACAAAAAGAGATGCACTGCCTCCACCCAGGAGACCTTTTCCCCTTCACTAGGAAACCTCTGTTTATCATTGTCGACTCCTCCAACAGCACAGCTTATAAGAATTTCTCCAATCTGTTCGGCCAGCCCCTTGTTTGCCTGCTTTCTCCAACAGTATATCCGAAGAGCATGCAAGACCAGTCTCAGCGTGGGAGTCTGTTTACTCTCTTCCTTTACAACCCCCTCATGGGCTTCCTATCTGTCTGTGGACTGAGCAGCATGCGTTATGGATTGTGGGAAAAAGCCCAGGAACTCCTGCGGAAGGTTTTCCATGACATTGGCCAGATGATCACAAGTTCACGAGTTATAGATCAGGCGTATCTGCAGTTTTATGGTGATGAGTTTCTGCGTCTGCTTATGATCCGCTTCGTGTTCTGCTCCTCCGCGCTCCGGTTACACAAGCTCTTCCGGGAAGCGAGGAGTTTTCCAGAATCGTATCCCCCTCTGCCAAAACAGGAGATGGTGGAGAGCAGCCTTCTACAGAAACATGTGCTGGAGCTGGCGGCTATGCTGGACGTGCAAAACCTCTTTTCCGATGGCATGCTGGATAACTATTGA
>TCONS_00059043
CAGAAATTAGTATTTGGCTGTTTTGGAttgacttttttttgtgttttgttttcagcagCTGCCATGACAGGGGTGGGGGCAGAGGATGACATCCCTCTCTGTGAGAGGAAAACTGTCACTGACTTCTGCTATCTCCTGGACAAGTCCAAGCAGCTTTTCAATGGCTTAAGGGATCTGCCTCAATATGGACACAAGCAGTGGCAGTCCTATTTTGGCCGAACGTTTGACGTCTACACCAAGCTGTGGAAGTTTCAGCAGCAGCACAGACAAGTCCTGGACAACCGGTATGGTCTCAAGAGGTGGCAGATAGGTGAAGTGGCCTCAAAAATTGGCCAGTTGTACTACCATTACTACCTCCGCACTTCAGAAACAAGCTACCTAAATGAAGCCTTCTCTTTCTATTCGGCAATTCGCCAACGGTCATATTACCACCAGGTCAACAAAGAAGACAGGCCAGAGCTGGTTGTAAAAAAGCTGAGGTATTACGCTCGGTTTATCGTTGTTTGTCTGTTGCTCAACAAGATGGACCTGGTTAAGGTGTTGGTTAAGGAACTTTCGGAGGAGATTGAGGACTACACCCAGCGCTTCAACACTGAGGACCAGTTAGAGTGGAATCTGGTGCTGCAGGAAGTAGCAGCTTTTGTGGAGGCCGATCCTCTGATGATCCTGAATGATGACAATGCTGTGGTGGTCCTTTCCAATCGGCTGCAGGAGGGAGGTGTGCCCCCTCTGGAGCAGGGCATGGTGGTTGGCCAGCTCACCTTGGCAGATGCTCTCATCtcatttttttgttgttgcaatgATTGGGTGAAGTTCAGCGAGCTGACCATCGATATGTTTCGAATGCTTCAAGCGCTTGAGAGGGAACCGGTGAACCTGGCTACGCAAAGCTCCAAACCAGGGACACTTGAGCCCAATGAAAAGCCGGCCAAGAGAGAGAACCCTCATAAATATCTCCTCTACAAACCAACCTTCAGCCAGCTCTACACTTTCCTGTCTGCCTCCTTCAAGGAGCTGCCGGCCAATAGTGTCCTGCTGGTGTATCTCTCTGCCACTGGAGTTTTCCCCACTGGACGCTCTGAGAaaaattctgtatCTGCCCttatacattattttttgttgtgttgtttttgttag
>TCONS_00059044
CAGAAATTAGTATTTGGCTGTTTTGGAttgacttttttttgtgttttgttttcagcagCTGCCATGACAGGGGTGGGGGCAGAGGATGACATCCCTCTCTGTGAGAGGAAAACTGTCACTGACTTCTGCTATCTCCTGGACAAGTCCAAGCAGCTTTTCAATGGCTTAAGGGATCTGCCTCAATATGGACACAAGCAGTGGCAGTCCTATTTTGGCCGAACGTTTGACGTCTACACCAAGCTGTGGAAGTTTCAGCAGCAGCACAGACAAGTCCTGGACAACCGGTATGGTCTCAAGAGGTGGCAGATAGGTGAAGTGGCCTCAAAAATTGGCCAGTTGTACTACCATTACTACCTCCGCACTTCAGAAACAAGCTACCTAAATGAAGCCTTCTCTTTCTATTCGGCAATTCGCCAACGGTCATATTACCACCAGGTCAACAAAGAAGACAGGCCAGAGCTGGTTGTAAAAAAGCTGAGGTATTACGCTCGGTTTATCGTTGTTTGTCTGTTGCTCAACAAGATGGACCTGGTTAAGGTGTTGGTTAAGGAACTTTCGGAGGAGATTGAGGACTACACCCAGCGCTTCAACACTGAGGACCAGTTAGAGTGGAATCTGGTGCTGCAGGAAGTAGCAGCTTTTGTGGAGGCCGATCCTCTGATGATCCTGAATGATGACAATGCTGTGGTGGTCCTTTCCAATCGGCTGCAGGAGGGAGGTGTGCCCCCTCTGGAGCAGGGCATGGTGGTTGGCCAGCTCACCTTGGCAGATGCTCTCATCtcatttttttgttgttgcaatgATTGGGTGAAGTTCAGCGAGCTGACCATCGATATGTTTCGAATGCTTCAAGCGCTTGAGAGGGAACCGGTGAACCTGGCTACGCAAAGCTCCAAACCAGGGACACTTGAGCCCAATGAAAAGCCGGCCAAGAGAGAGAACCCTCATAAATATCTCCTCTACAAACCAACCTTCAGCCAGCTCTACACTTTCCTGTCTGCCTCCTTCAAGGAGCTGCCGGCCAATAGTGTCCTGCTGGTGTATCTCTCTGCCACTGGAGTTTTCCCCACTGGACGCTCTGAGAGTGAAGGACCTTATGACTTTGGAGGTGTCCTGACCAATACTAACCGAGATGTGGTGAATGGTGAGACGGTGCAGAAAAGAAACCAGGCACAAAAAGAGATGCACTGCCTCCACCCAGGAGACCTTTTCCCCTTCACTAGGAAACCTCTGTTTATCATTGTCGACTCCTCCAACAGCACAGCTTATAAGAATTTCTCCAATCTGTTCGGCCAGCCCCTTGTTTGCCTGCTTTCTCCAACAGTATATCCGAAGAGCATGCAAGACCAGTCTCAGCGTGGGAGTCTGTTTACTCTCTTCCTTTACAACCCCCTCATGGGCTTCCTATCTGTCTGTGGACTGAGCAGCATGCGTTATGGATTGTGGGAAAAAGCCCAGGAACTCCTGCGGAAGGTTTTCCATGACATTGGCCAGATGATCACAAGTTCACGAGTTATAGATCAGGCGTATCTGCAGTTTTATGGTGATGAGTTTCTGCGTCTGCTTATGATCCGCTTCGTGTTCTGCTCCTCCGCGCTCCGGTTACACAAGCTCTTCCGGGAAGCGAGGAGTTTTCCAGAATCGTATCCCCCTCTGCCAAAACAGGAGATGGTGGAGAGCAGCCTTCTACAGAAACATGTGCTGGAGCTGGCGGCTATGCTGGACGTGCAAAACCTCTTTTCCGATGGCATGCTGGATAACTATTGA
>TCONS_00059045
agcgctgcacaagaagtttggccagaggagaaacgGTCATGccccactggcttgcttggtttggtacTCGTAGGGCTGCCCATCAATGgatttctcttcagtgtttggactttcacagCTGCCATGACAGGGGTGGGGGCAGAGGATGACATCCCTCTCTGTGAGAGGAAAACTGTCACTGACTTCTGCTATCTCCTGGACAAGTCCAAGCAGCTTTTCAATGGCTTAAGGGATCTGCCTCAATATGGACACAAGCAGTGGCAGTCCTATTTTGGCCGAACGTTTGACGTCTACACCAAGCTGTGGAAGTTTCAGCAGCAGCACAGACAAGTCCTGGACAACCGGTATGGTCTCAAGAGGTGGCAGATAGGTGAAGTGGCCTCAAAAATTGGCCAGTTGTACTACCATTACTACCTCCGCACTTCAGAAACAAGCTACCTAAATGAAGCCTTCTCTTTCTATTCGGCAATTCGCCAACGGTCATATTACCACCAGGTCAACAAAGAAGACAGGCCAGAGCTGGTTGTAAAAAAGCTGAGGTATTACGCTCGGTTTATCGTTGTTTGTCTGTTGCTCAACAAGATGGACCTGGTTAAGGTGTTGGTTAAGGAACTTTCGGAGGAGATTGAGGACTACACCCAGCGCTTCAACACTGAGGACCAGTTAGAGTGGAATCTGGTGCTGCAGGAAGTAGCAGCTTTTGTGGAGGCCGATCCTCTGATGATCCTGAATGATGACAATGCTGTGGTGGTCCTTTCCAATCGGCTGCAGGAGGGAGGTGTGCCCCCTCTGGAGCAGGGCATGGTGGTTGGCCAGCTCACCTTGGCAGATGCTCTCATCtcatttttttgttgttgcaatgATTGGGTGAAGTTCAGCGAGCTGACCATCGATATGTTTCGAATGCTTCAAGCGCTTGAGAGGGAACCGGTGAACCTGGCTACGCAAAGCTCCAAACCAGGGACACTTGAGCCCAATGAAAAGCCGGCCAAGAGAGAGAACCCTCATAAATATCTCCTCTACAAACCAACCTTCAGCCAGCTCTACACTTTCCTGTCTGCCTCCTTCAAGGAGCTGCCGGCCAATAGTGTCCTGCTGGTGTATCTCTCTGCCACTGGAGTTTTCCCCACTGGACGCTCTGAGAGTGAAGGACCTTATGACTTTGGAGGTGTCCTGACCAATACTAACCGAGATGTGGTGAATGGTGAGACGGTGCAGAAAAGAAACCAGGCACAAAAAGAGATGCACTGCCTCCACCCAGGAGACCTTTTCCCCTTCACTAGGAAACCTCTGTTTATCATTGTCGACTCCTCCAACAGCACAGCTTATAAGAATTTCTCCAATCTGTTCGGCCAGCCCCTTGTTTGCCTGCTTTCTCCAACAGTATATCCGAAGAGCATGCAAGACCAGTCTCAGCGTGGGAGTCTGTTTACTCTCTTCCTTTACAACCCCCTCATGGGCTTCCTATCTGTCTGTGGACTGAGCAGCATGCGTTATGGATTGTGGGAAAAAGCCCAGGAACTCCTGCGGAAGGTTTTCCATGACATTGGCCAGATGATCACAAGTTCACGAGTTATAGATCAGGCGTATCTGCAGTTTTATGGTGATGAGTTTCTGCGTCTGCTTATGATCCGCTTCGTGTTCTGCTCCTCCGCGCTCCGGTTACACAAGCTCTTCCGGGAAGCGAGGAGTTTTCCAGAATCGTATCCCCCTCTGCCAAAACAGGAGATGGTGGAGAGCAGCCTTCTACAGAAACATGTGCTGGAGCTGGCGGCTATGCTGGACGTGCAAAACCTCTTTTCCGATGGCATGCTGGATAACTATTGA

Function

symbol description
scai Predicted to enable transcription corepressor activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human SCAI (suppressor of cancer cell invasion).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-57 Predicted to enable transcription corepressor activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to human SCAI (suppressor of cancer cell invasion).

Ensembl:

ensembl_id ENSDARG00000060865

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059040 False 1936 mRNA 0.51 17 31995683 32046297
TCONS_00059041 False 1413 mRNA 0.49 16 32007627 32043616
TCONS_00059042 False 1725 mRNA 0.50 18 32009080 32046297
TCONS_00059043 False 1137 mRNA 0.48 13 32009542 32038266
TCONS_00059044 False 1767 mRNA 0.49 18 32009542 32046297
TCONS_00059045 True 1827 mRNA 0.50 18 32009956 32046297

Neighbor

gene id symbol gene type direction distance location
XLOC_030195 ppp6c coding upstream 282 31983098 ~ 31995401 (+)
XLOC_030194 myo1hb coding upstream 14488 31959954 ~ 31981195 (+)
XLOC_030193 ungb coding upstream 42895 31944270 ~ 31952788 (+)
XLOC_030192 NA coding upstream 77547 31911003 ~ 31918136 (+)
XLOC_030191 NA coding upstream 83605 31904847 ~ 31912078 (+)
XLOC_030197 zmat5 coding downstream 29812 32076109 ~ 32080192 (+)
XLOC_030198 NA coding downstream 37432 32083729 ~ 32086577 (+)
XLOC_030199 tescb coding downstream 95493 32141790 ~ 32148529 (+)
XLOC_030200 taok3b coding downstream 116387 32162684 ~ 32182728 (+)
XLOC_030201 myhz2 coding downstream 160081 32206378 ~ 32217579 (+)
XLOC_030185 CR759893.1 non-coding upstream 446896 31548312 ~ 31548787 (+)
XLOC_030177 NA non-coding upstream 1021604 30780430 ~ 30974079 (+)
XLOC_030204 NA non-coding downstream 213866 32260163 ~ 32264060 (+)
XLOC_030206 NA non-coding downstream 312583 32358880 ~ 32367481 (+)
XLOC_030208 CR376857.1 non-coding downstream 591351 32637648 ~ 32637765 (+)
XLOC_030212 CR925757.1 non-coding downstream 838908 32885205 ~ 32885331 (+)

Expression


Co-expression Network