XLOC_030197 (zmat5)


Basic Information

Item Value
gene id XLOC_030197
gene name zmat5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32076109 ~ 32080192 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059046
ATATTGATCTAGCAAACAGAAGGAACGTACCTGTTTTCCTAGACGTTTATCCAACGTATATTGATTTCTCCTTAATTAAACTGACGACCAGAATACATTTTGAGTTTGATAAACAATGGGGAAACGGTATTACTGTGACTACTGTGACCGCAGCTTTCAGGACAACCTCCACAACAGAAAGAAGCACCTAAACGGCGTCCAGCATCACCGGGCGAAGAAAGCCTGGTTTGACAACTTCAGAGATGCTGCCACACTTTTAAACGACGAGCGATCGAAAGAAGTCTGTAGAAAGTTTGTCCAGACAGGACATTGTGTGTTTGGTACGAGTTGTCGATTTTCACACATGTCTGAGAAGCAAATGAAGATGCTGGAGCAGAAGATTGATGATGAAAAGCGTCAGAAGGAAGATCCTGACCAGGATGGATCATCTGAGCGCAGCGTTGATGAATGGCTCTCCAGAAGAGAGAAGAAACTGGCTGCTTTGACATCAGGAAGAGTTTTAAGGATGGAAGAGGAAGAATGCACAGAAAACATTGAGATACCTCCTTATTTGCTATCTATTCCAGATCTTCCTCCATCTCTCCATCCTCCACCTGCTGGTGGTTGGAGAGTGACGGTGCACAACGAATGGGgttgaaattaaatgtaaaatccttttatttaatgatttttttccttttagacCATGCTGCTCACTGTAATCTTTACAAAGGCTTTTTATATATCAAAAACATTGTACATATTTCTATCCAAACAATTGCATgcataatatatttgtgtaataGGAAGCATGTCTGCATGACTgaacaagtttacattttatataaacaCTCTCAATAAATACAGTGCATTTAACTTCA
>TCONS_00059047
TACCTGTTTTCCTAGACGTTTATCCAACGTATATTGATTTCTCCTTAATTAAACTGACGACCAGAATACATTTTGAGTTTGATAAACAATGGGGAAACGGTATTACTGTGACTACTGTGACCGCAGCTTTCAGGACAACCTCCACAACAGAAAGAAGCACCTAAACGGCGTCCAGCATCACCGGGCGAAGAAAGCCTGGTTTGACAACTTCAGAGATGCTGCCACACTTTTAAACGACGAGCGATCGAAAGAAGTCTGTAGAAAGTTTGTCCAGACAGGACATTGTGTGTTTGGTACGAGTTGTCGATTTTCACACATGTCTGAGAAGCAAATGAAGATGCTGGAGCAGAAGATTGATGAACTTTGTGGTGACTTCCTGCCAGATGAAAAGCGTCAGAAGGAAGATCCTGACCAGGATGGATCATCTGAGCGCAGCGTTGATGAATGGCTCTCCAGAAGAGAGAAGAAACTGGCTGCTTTGACATCAGGAAGAGTTTTAAGGATGGAAGAGGAAGAATGCACAGAAAACATTGAGATACCTCCTTATTTGCTATCTATTCCAGATCTTCCTCCATCTCTCCATCCTCCACCTGCTGGTGGTTGGAGAGTGACGGTGCACAACGAATGGGgttgaaattaaatgtaaaatccttttatttaatgatttttttccttttagacCATGCTGCTCACTGTAATCTTTACAAAGGCTTTTTATATATCAAAAACATTGTACATATTTCTATCCAAACAATTGCATgcataatatatttgtgtaataGGAAGCATGTCTGCATGACTgaacaagtttacattttatataaacaCTCTCAATAAATACAGTGCATTTAACTTCA

Function

symbol description
zmat5 Predicted to enable zinc ion binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U12-type spliceosomal complex. Orthologous to human ZMAT5 (zinc finger matrin-type 5).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-040808-31 Predicted to enable zinc ion binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U12-type spliceosomal complex. Orthologous to human ZMAT5 (zinc finger matrin-type 5).

Ensembl:

ensembl_id ENSDARG00000035434

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059046 False 860 mRNA 0.40 5 32076109 32080192
TCONS_00059047 True 857 mRNA 0.40 5 32076136 32080192

Neighbor

gene id symbol gene type direction distance location
XLOC_030196 scai coding upstream 29812 31995683 ~ 32046297 (+)
XLOC_030195 ppp6c coding upstream 80708 31983098 ~ 31995401 (+)
XLOC_030194 myo1hb coding upstream 94914 31959954 ~ 31981195 (+)
XLOC_030193 ungb coding upstream 123321 31944270 ~ 31952788 (+)
XLOC_030192 NA coding upstream 157973 31911003 ~ 31918136 (+)
XLOC_030198 NA coding downstream 3537 32083729 ~ 32086577 (+)
XLOC_030199 tescb coding downstream 61598 32141790 ~ 32148529 (+)
XLOC_030200 taok3b coding downstream 82492 32162684 ~ 32182728 (+)
XLOC_030201 myhz2 coding downstream 126186 32206378 ~ 32217579 (+)
XLOC_030202 myhc4 coding downstream 141563 32221755 ~ 32233862 (+)
XLOC_030191 NA non-coding upstream 164031 31904847 ~ 31912078 (+)
XLOC_030185 CR759893.1 non-coding upstream 527322 31548312 ~ 31548787 (+)
XLOC_030177 NA non-coding upstream 1102030 30780430 ~ 30974079 (+)
XLOC_030204 NA non-coding downstream 179971 32260163 ~ 32264060 (+)
XLOC_030206 NA non-coding downstream 278688 32358880 ~ 32367481 (+)
XLOC_030208 CR376857.1 non-coding downstream 557456 32637648 ~ 32637765 (+)
XLOC_030212 CR925757.1 non-coding downstream 805013 32885205 ~ 32885331 (+)

Expression


Co-expression Network