LOC110485521 (LOC106589832)


Basic Information

Item Value
gene id LOC110485521
gene name LOC106589832
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 12871885 ~ 12878585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940256.1
CAGACTGATAGAGGTGAGGAGGGTTACACAGGAGAGACAAGCCGGTTCAGAGCGACTGGGTTCATccgagagaaggaaggagaagacACACAGGGATACAGACAGAAAACCCAGCGACCCGTTCCAACAAACTCCTACCTGGctatGACTGACGTCCTCCCCGACAGCCATGCCAGAACTCCAGAGCCAGAGCTCCGCCTGGTCCTCCTAGGGACCATCGGCTGTGGCAAGACCCTGTCAGGAGACACCCTCCTGGGCCAGTCCTCCTCCggctctccttcctcctctggtTCTTCGCCCAGGCTTTGCCAGCTGAGGCCTGGGGCCTCCGAGGGCCGGAGGTTGACTGTGGTGGAGGCCCCTCGCTGGTACTGGAGCGGGGGCCACATGGAGGCTGGggtgaggaaggagacagagagggcacTTGAGCTGGCTGCCCCGGGGCCACACGCCTTCCTGCTGCTGGTTCCTGTCGGCCAGTTCACCGAGGTGGAGCACAGAGTGCCCGCTGAGCTGGAGGAGGTGTTTGGGGAGGGGGTGTTGAAACACACCCTGGTACTGTTCACCTGTGGAGACTACCTGATGGGCCAGGGGGCGGGACAGTACCTGgagggagaggaccctgggctcagggAGGTGATTGACAGGTGTGGGGGCCAATACCACGTCCTCAACAACCGCCGACCGCAGGACAGGGAGCAGGTCAGGGAGCTGCTGGAGAAGGTGGAGAACATGGTACAAAAGAACAGAGGATGCTACATACGACAAAACACCctgcagagagagatggaagaacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggagagagagagggaactgaaGAGGTACAAagtgaaggaggagaaagagactgtGCTGGAATCTAGACATgtcacaaacacagagacacccaGATATTGTGGAAGCCGGAAAAGAGAGGTTACACCTAACTCTGctatagagaggagaagagaggaagagagggaagagatcaagagaggggaagagagtgaggaGATGGAAAACTGGAAGGAAGAGATGGagaagataaagaaagagagggatgagataatgaagagcaggaaagagaaggaagagatggagagaaaaatagaggaagagtgggagaagagaagaaaatatgagatggagaagagaagggggagagagagggaactgaaAGAGAAGGTGGAAGAacaagcgagggagagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggagagagagagggaaatgaagGAGAAGGTGGAAGAacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggagagagagagggaaatgaagGAGAAGGTGGAAGAacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggggagagagagggaactgaaGGAGAAGGTGGAAGAacaagcgagggggagagagagggaactggaaTCTAGACACGTCACCAACACAGAGACACGCAGATATTGGGGAAACAGGAAAAGAGAGGTTACACCTAACTCTGctatagagaggagaagagaggaagagagggaagagatcaagaggagaagggaagagatggagaggaaaagagaagaagagattgagaggagaagaagggaagATATGGAAGAGAAAGTGACTGTGAAACCCTTGGTTAACTGTCTTCAATCAACACCAACACAACAGCAGCAGCCAAAAAAGCCCCAGAATGGTGGTCCAGCACTGTTCACAAGGATCCCTAGTTTCCATCTGACTGAAGAGGGCGCTATACTCTCACAGCTGTCCGAACTCGAAGCAAAACCAGCCCAGAAAGTTGTTAATACCTTCTGCCACAGAATCAACAGCATTGGAGAGAAGacaaccacctcctcctcctcctacacctcctcctcctcctcccagtcaGAGTTGCGTGTGGTTCTGCTGGGTAGGTCAGGGTCAGGGAAGAGTGCAGCAGGTAATATCATACTGGGGCGGGAGGAGTTTGTGTCTCGACCAGACATTACCACAGCCGTCACTCAGGACTGTCAGAAGAGCAGGGCCCTCGTTGCCGGGAGACGGgtgGCAGTGGTGGACACTCCAGACTGGTTCCGCTCCGAGCACCCTCCCAATGTGGTCCGTTCCCAGCTGTCGTCCTGTGTGGCCCTCTCGGCCCCTGGCCCCCACGCCTTCATCCTCTGTGTCCCCGTGGACCAACCAGCCCAGGCAGAGCTACAGGCTCTAGGGGCCCTAGAGAAAGTCTTTGGTCCTGGGGCGGTCCGGACCCACACCCTGGTCCTCTTCACTCACTCCGATCGGTTGAAGGAGAGCGGGAAAGTGGGAGTGGAAGGAGTGGAGAAGTATATCTCCAGCCAGAGGAGAGATTTGTTGGAGTTGGTTAAACGATGTGGGGATCGGTATcatgtgatggagagagggagcggaggaaaagaggaggaggagaggaagaggaggagtgtgggGGAGTTATTGGAGAAGGTGGagcagacagtgagagagggaggaggagagtgttTCTCCTGTCCGCTCTTCCAGGAGGCGGAGGATagggtgagacagagacaggaagagatagtgagggagaggaggggaagaggagaggaggtgaagagacACGCGCTTCATTCCTACTCCATGCAGCccttgagagagacagaggaagatgtggatgaggaggagaacgagagaacgagagaggaggcGGAGAAGAGTGTGAGCGCCCTGGAATTGGAAAATCTTCCCTCGCTCTCGTCCTCTTCTGCATGGTATTCGTCGCTCCTTCGCTCGGTGTGGGAGAAGGTGGGGGCGGGAGCGAGTAAGGTCCCCAAGCTGACGGCTGGAGGTGCGCTGCTGGGTGGGGTGGTGGGCGTGTTCTTTGGAGGGCCCATAGGGGGAGCTATAGGGGCCACTGCTGGATCTGTGGCCACTGAGGTGGGGAGAAGGAGGTTTAGCCAGACAAAGAACTCAGCAGAAGAGACAGATGCCACAGGGAGAATAGAAGGAGAAATCTTGGACAAGGTGTTGAAAACCGAGTGAGAGAGTCAGATCCACACACGTTGATATGGATGTACAGTACAGCATTTTATGAGAGATTAGAGGTTTCTACCTATGATATATATCCACAGGTGATTGCCTGTGACCGTGCAGACGTTGTACATATCTGTGATTATAAACTGGGTTGGTCGAGCCCTGAATGATGATTggttgacagccgtggtatatcagacagtataccacgggtatgacaaacatttctttttactgctctaattatgttggtaaccagttgatAATAGcgataaggcacctcgggggtttgtgatatatggccaatataccatggctatatactaCGTTgcatcgtgcctaagaacagcccttagccgtggtatattttccatataccacaccccctcgggccttattgcttaaaaatAATGCTGGTAATATTGTATATCTGTGAACATAATGTTGGTAACATTGTACAACATATACTGATGTGTAAGTTGTTTTGCGGCAAATACCGGTTCTCATTGACTGCTTCAATGTTTTGTTGTATTTCTTTTCCAGCTATTACAATTATGACTTGTTAAATAACTCACATGTGCTACATCATTATTATTCAAATTACATTCAACATGGTTTCTTTAAATGTTAAACTACTATTGTGCATATAGTTAATCCGTTTCTTAATGCTAATAAAACACATTGCATGATAATATCATTCAGTTGGGTTTGAAGGCCTACAATATGTAAAGTTGGTCCTGCAAATATGTAATAAAACccagaggggaggcagaggcaaGGGGGTATTATCTCCATGTCCCAGACTGCTTTGCCTCACCCTCCAGGCCTCTTGTATCAGTAGGACTGGATAGAGCAGGTCTAGGACACCAGCCCCTACCTCACCAACCACCTCTCCTCTGTGTGATCTGATCCTCAGGGGCATCCGTAGTTCACcctacaagctctcacagtctcacgtcagaattagacgttcatccatgtttctcaaacgtcaaatttcaaagtgtttgagGTTGAGTTTAGGCGTTAACTCCAAATTCTTATGGTTAGGCATTCATCCTGAATGGTTCATGCAACGATTAAGGTTTGGCATAGGATTAAAAcaaaatatcaaaaacaacttta

Function

NR:

description
uncharacterized protein LOC110485521

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940256.1 True 4410 mRNA 0.51 7 12871885 12878585

Neighbor

gene id symbol gene type direction distance location
LOC110493438 LOC106564504 coding downstream 112158 12754186 ~ 12759727 (-)
LOC118938209 LOC106564503 coding downstream 127667 12722542 ~ 12744218 (-)
LOC110485637 LOC106590256 coding downstream 151467 12711684 ~ 12720418 (-)
LOC110487266 NA coding downstream 423322 12416017 ~ 12448563 (-)
LOC110485629 NA coding downstream 511555 12358008 ~ 12366285 (-)
LOC110485520 LOC106590222 coding upstream 2363 12880948 ~ 12883307 (-)
LOC110485643 LOC106590024 coding upstream 22037 12900622 ~ 12904681 (-)
LOC110485647 LOC106589946 coding upstream 30177 12908759 ~ 13083882 (-)
LOC110487275 LOC106589720 coding upstream 263158 13141743 ~ 13143937 (-)
LOC110516103 LOC106589920 coding upstream 265490 13144075 ~ 13151846 (-)
G1144975 NA non-coding downstream 1760 12869193 ~ 12870125 (-)
G1144939 NA non-coding downstream 44064 12827255 ~ 12827821 (-)
G1144936 NA non-coding downstream 49460 12821663 ~ 12822425 (-)
G1144438 NA non-coding downstream 79687 12791935 ~ 12792198 (-)
G1144436 NA non-coding downstream 80742 12790768 ~ 12791143 (-)
G1144978 NA non-coding upstream 12691 12891276 ~ 12891608 (-)
G1144987 NA non-coding upstream 54002 12932587 ~ 12933297 (-)
G1145019 NA non-coding upstream 171423 13050008 ~ 13053000 (-)
G1144338 NA other downstream 253727 12617959 ~ 12618158 (-)
G1144335 LOC106564512 other downstream 256326 12614976 ~ 12615559 (-)
G1143771 NA other downstream 790003 12043108 ~ 12081882 (-)
G1143743 NA other downstream 919317 11951595 ~ 11952568 (-)
G1145035 NA other upstream 246285 13124870 ~ 13126598 (-)
LOC110485655 rab3d other upstream 286929 13163816 ~ 13178960 (-)
G1145046 LOC106589870 other upstream 414350 13292935 ~ 13294143 (-)
G1145110 LOC106589620 other upstream 478489 13357074 ~ 13360808 (-)
LOC110485696 LOC106564559 other upstream 784595 13657453 ~ 13665295 (-)

Expression


Co-expression Network