LOC110516103 (LOC106589920)


Basic Information

Item Value
gene id LOC110516103
gene name LOC106589920
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13144075 ~ 13151846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940286.1
ATTGAACAGCTAATAAGGAATTTCATAACTTTTAGCTTTTGCCTTTGGCCAATTATATAcacagtaactagctagctaacgttatttaattagctaaaaatgcacatttttcaaaaGGAATATGAAATATCCAAGCCTATAGTAGCTAGTTAACTTCTAGCTAACTTTGGATAACATTATTTTTGCATGTAATGAGTGTTTGTCATTTCAATGATGGATAACAATTCAACAACAACGTTGAGTATTGAACATTTCCAGATTATTGGTCTATGTGAAAAATGTTAACCTGTATGTATGGTTTCGGTAGATTGAACCAACCGGTTCATGACATTACAGCGCTGTCACCCATGTCCAGACTACATCACCTGTATGGCCTGTTGAGGTACCTGATGATGTTACTCAGTGGCATCATATTTGTGAGTGGCCTTGTGCTGTTTGGCCTAGGCGTGTGGATTAGGTACGGGGCGGCCACCTTTGTCCAGGTGATGGGCTCTTTCTCGGCACAGCTGGTGACCATCAgctatgtgtgtatgtgcctggGGGCCATCCTGTCTCTGCTGGGGTTCATTGGCTGCTATGGGGCCTGGAGCGAGAACCGCTGCCTCATCTTGCTGTATTTCTTCATCGTGTCCATGATGTTTACAGCTGAGGTTACTGGGGTTATTTTCATCTTGGTGTACAAAGATCTGGTGGAGGTTATGATTCGTGGAGCCAGTAAGGACTCTTTACGGATGTCCTATATGGGACCAACGGCTTCAGACCCCATATCAACAGCCTGGAACACCATCATGGTCCATTACAAGTGCTGTGGCTTTGACAACTCCACGGAAGACTTCAAGAACTCCGTGTTCAGTGCTAACACTGGCCTGTTGTACCCCAAGACGTGCTGTGTTGACCTGACGAGCACCGCCTGCGACGGCCTCGACACCACCCAGGGCCTGATACACCCAAAGAGCTGCATTACCAAACTGATCAATGTGATCCGGGACCAAAGCGTCATCTTTGGCTCCACTGCTTCTGGGATCTGTGTCATGGAGtTGGCGTCCATGATGGTGTCAGTAGTGTTGTTCGTCAGACTAGGCAACACCTATTATTAgaccagcagcaacacagagaaCAGAGCCTGACCCAGGCATGGTAGGTCAACCAGACCAGAGACAACACCATAATAAATGAGACTTGCAGATGAAGCCTCCTTGTCAGTAGACTGTGGTTATTGTGGTGCTTAGGGACTGCTTAGGGTTTATGGTGGATGTGGGAGGGTgggtgtgtctctctgtatgtgaatgtgtgatgATTAGCAGGCTAGTGAACAGGAAAACTCTTTGACAACTACTCCCTCTTGTGGAATATATCTGAAGTGTCAGAGGCAGAATCACAGTATCATGGTCAGTCACATGTCTGGGAACATTAAGTAACATTGagttatattataataatatatgccatttagcagacactttaatCCAAACAGGTTTACGGtagtgcgtgcatacatttttgttCTCCTTAACAGTTACTTCACTCACTAACAGATAGAAGCTGCCTATGGGAAAGTGGT
>XM_036940287.1
agtcaaggggtctgaatactttccgatgggCTGTAGCTTGTCatagatttacatacagaataatatgaaatgctctgataCCAGGTTCCTATTGAAAAGCACAATAGAAATAAAGTTAACATTGTATCCTCGAGCTACATCTATTGTTACAAAATGTTAATTGTGACACCTCTGATTATGACCTTATGACCCAGAACTGCGTTGCCCTGGGAAACGGGTGCGCATTGCCATGAAGAAGGTTCGTGCTCGTGCCCCTGTCAAAAGAAGATACCAATAGCAAGTTAGCTTGTCAGCTGGGCTAGCTAAATACAACTTGTAGCCTACAAAAAGATTGAACCAACCGGTTCATGACATTACAGCGCTGTCACCCATGTCCAGACTACATCACCTGTATGGCCTGTTGAGGTACCTGATGATGTTACTCAGTGGCATCATATTTGTGAGTGGCCTTGTGCTGTTTGGCCTAGGCGTGTGGATTAGGTACGGGGCGGCCACCTTTGTCCAGGTGATGGGCTCTTTCTCGGCACAGCTGGTGACCATCAgctatgtgtgtatgtgcctggGGGCCATCCTGTCTCTGCTGGGGTTCATTGGCTGCTATGGGGCCTGGAGCGAGAACCGCTGCCTCATCTTGCTGTATTTCTTCATCGTGTCCATGATGTTTACAGCTGAGGTTACTGGGGTTATTTTCATCTTGGTGTACAAAGATCTGGTGGAGGTTATGATTCGTGGAGCCAGTAAGGACTCTTTACGGATGTCCTATATGGGACCAACGGCTTCAGACCCCATATCAACAGCCTGGAACACCATCATGGTCCATTACAAGTGCTGTGGCTTTGACAACTCCACGGAAGACTTCAAGAACTCCGTGTTCAGTGCTAACACTGGCCTGTTGTACCCCAAGACGTGCTGTGTTGACCTGACGAGCACCGCCTGCGACGGCCTCGACACCACCCAGGGCCTGATACACCCAAAGAGCTGCATTACCAAACTGATCAATGTGATCCGGGACCAAAGCGTCATCTTTGGCTCCACTGCTTCTGGGATCTGTGTCATGGAGtTGGCGTCCATGATGGTGTCAGTAGTGTTGTTCGTCAGACTAGGCAACACCTATTATTAgaccagcagcaacacagagaaCAGAGCCTGACCCAGGCATGGTAGGTCAACCAGACCAGAGACAACACCATAATAAATGAGACTTGCAGATGAAGCCTCCTTGTCAGTAGACTGTGGTTATTGTGGTGCTTAGGGACTGCTTAGGGTTTATGGTGGATGTGGGAGGGTgggtgtgtctctctgtatgtgaatgtgtgatgATTAGCAGGCTAGTGAACAGGAAAACTCTTTGACAACTACTCCCTCTTGTGGAATATATCTGAAGTGTCAGAGGCAGAATCACAGTATCATGGTCAGTCACATGTCTGGGAACATTAAGTAACATTGagttatattataataatatatgccatttagcagacactttaatCCAAACAGGTTTACGGtagtgcgtgcatacatttttgttCTCCTTAACAGTTACTTCACTCACTAACAGATAGAAGCTGCCTATGGGAAAGTGGT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17357 TSPAN16; tetraspanin-16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940286.1 False 1561 mRNA 0.45 7 13144075 13151476
XM_036940287.1 True 1584 mRNA 0.47 8 13144075 13151846

Neighbor

gene id symbol gene type direction distance location
LOC110487275 LOC106589720 coding downstream 138 13141743 ~ 13143937 (-)
LOC110485647 LOC106589946 coding downstream 60193 12908759 ~ 13083882 (-)
LOC110485643 LOC106590024 coding downstream 239394 12900622 ~ 12904681 (-)
LOC110485520 LOC106590222 coding downstream 260768 12880948 ~ 12883307 (-)
LOC110485521 LOC106589832 coding downstream 265490 12871885 ~ 12878585 (-)
LOC110485650 LOC106589714 coding upstream 2290 13154136 ~ 13161168 (-)
LOC110485655 rab3d coding upstream 11970 13163816 ~ 13178960 (-)
LOC110487513 LOC106589682 coding upstream 27749 13179595 ~ 13185984 (-)
LOC118938212 LOC106589906 coding upstream 59024 13210870 ~ 13262316 (-)
LOC110487278 LOC106589852 coding upstream 179669 13331515 ~ 13346367 (-)
G1145035 NA non-coding downstream 18798 13124870 ~ 13126598 (-)
G1145019 NA non-coding downstream 91075 13050008 ~ 13053000 (-)
G1144987 NA non-coding downstream 210778 12932587 ~ 12933297 (-)
G1145051 NA non-coding upstream 10044 13161890 ~ 13162308 (-)
G1145064 NA non-coding upstream 35497 13187343 ~ 13187920 (-)
G1145069 NA non-coding upstream 37582 13189428 ~ 13213171 (-)
G1145063 NA non-coding upstream 43579 13195425 ~ 13196688 (-)
G1144338 NA other downstream 525917 12617959 ~ 12618158 (-)
G1144335 LOC106564512 other downstream 528516 12614976 ~ 12615559 (-)
LOC110485629 NA other downstream 777790 12358008 ~ 12366285 (-)
G1143771 NA other downstream 1062193 12043108 ~ 12081882 (-)
G1145046 LOC106589870 other upstream 141089 13292935 ~ 13294143 (-)
G1145110 LOC106589620 other upstream 205228 13357074 ~ 13360808 (-)
LOC110485696 LOC106564559 other upstream 511334 13657453 ~ 13665295 (-)
LOC110485704 NA other upstream 651720 13798679 ~ 13812239 (-)

Expression


Co-expression Network