LOC110485650 (LOC106589714)


Basic Information

Item Value
gene id LOC110485650
gene name LOC106589714
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13154136 ~ 13161168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556753.2
gtgtgtttgtgagacctGTGGGGGTGGGTGAGGATAAAGGGCCAGATAGAGACGAACACTCCTCTCAAACATCAACAGTCATCACCTCAGCACAGgaGAAGGAAACAACAGACGGCAAAGATGTGTTGCTCCGGGTTTCTCAAGATTATGATGTTCATCTTCAATGGAGCCATCTTTTTGGCAGGTGTGGCCATCCTGGCAGTGGGGGTGTGGGTGAAGGTGGACAGTGGCTCTCTACTGGGAGTACTAGACAACATTAAGGACGCCCCAGCAGAACTGGGCCAGCTGGCTAACGTGGCCTACCTGCTCATGGGGGTCGGAGGGGTCCTGCTGATCATGGGCTTCCTAGGGTGCTGTGGAGCCATGAAGGAGTCCAGGTGTATGCTGATGCTGTTCTTCATCATCATCCTGATCATATTCATTGCAGAGGTGGCTGGGTGCGTGGTGGTCCTCGTCTTCCAACCACTGGCTAAGGAAGTTCTTGAGGACCTTAGTGAGAAGGTTGTTGACAGCATTCAAAAAGACTATGGGAAGGATGAGAGCCTGACTTCACTATGGAATGGTACCATGGAACAGTTCAAGTGCTGTGGATACCGCAATTACACAGACTTCGATGGATCCCCTTTCCAAGAGAACCCAACTGACCCTACGTACCCACCAACATGTTGCAGTAAAACTGAAACGTgcacagctgctgctgctgaacGCTCGAATGTCATTGGCTGCTTTACCATGTTGCTGAACCTGATAGAGGACAACGCTGTCATCATTGGAGCTGTTGGACTGGGCATCGCTGCGCTTGAGATTGCTGCCATGGTGGTGTCAATGGTTCTCTACCAACAGATTGGTAACAAGTAGCACTGAGGACCCCGACATCCAGGACCACGCCTGTTTAACCATCATCATTGCCTCACCTTGACACCTTCAGTCGACATGTTTAATTTCAAACACCAAAGATTATTAAAATATTTCAATTCTAAAAGAAAAACAAGAGAGGAAGGAGCGTTGTTCAAAACCCTGTTGTGACTCGATCACCTCCATGGTATATCAACAATATCTGGGCACATATACTGTATAGGGCCTACTGTATACATTCAGTACTTATTTATGTGTAAATTAGATTCCTTTATCTCTATCCTTATTTGTTTATTGCTGAAGCTGAAGACTTTACATGAAGGTATGATGTTTTGAGAAGGTAATTGCTTTACACTTGCTCTAACTGGCaagactttttattttattttttattctacaGTCTTGAATGGATATACAGTGTCTCATTTTGTACATATAAATATTGAAGTTTAGAAATTACCACATTCAA

Function

NR:

description
tetraspanin-1-like

GO: NA

KEGG:

id description
K17348 TSPAN1; tetraspanin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556753.2 True 1324 mRNA 0.45 8 13154136 13161168

Neighbor

gene id symbol gene type direction distance location
LOC110516103 LOC106589920 coding downstream 2290 13144075 ~ 13151846 (-)
LOC110487275 LOC106589720 coding downstream 10199 13141743 ~ 13143937 (-)
LOC110485647 LOC106589946 coding downstream 70254 12908759 ~ 13083882 (-)
LOC110485643 LOC106590024 coding downstream 249455 12900622 ~ 12904681 (-)
LOC110485520 LOC106590222 coding downstream 270829 12880948 ~ 12883307 (-)
LOC110485655 rab3d coding upstream 2648 13163816 ~ 13178960 (-)
LOC110487513 LOC106589682 coding upstream 18427 13179595 ~ 13185984 (-)
LOC118938212 LOC106589906 coding upstream 49702 13210870 ~ 13262316 (-)
LOC110487278 LOC106589852 coding upstream 170347 13331515 ~ 13346367 (-)
LOC110485678 LOC106589534 coding upstream 278530 13439698 ~ 13458698 (-)
G1145035 NA non-coding downstream 28859 13124870 ~ 13126598 (-)
G1145019 NA non-coding downstream 101136 13050008 ~ 13053000 (-)
G1144987 NA non-coding downstream 220839 12932587 ~ 12933297 (-)
G1145051 NA non-coding upstream 722 13161890 ~ 13162308 (-)
G1145064 NA non-coding upstream 26175 13187343 ~ 13187920 (-)
G1145069 NA non-coding upstream 28260 13189428 ~ 13213171 (-)
G1145063 NA non-coding upstream 34257 13195425 ~ 13196688 (-)
G1144338 NA other downstream 535978 12617959 ~ 12618158 (-)
G1144335 LOC106564512 other downstream 538577 12614976 ~ 12615559 (-)
LOC110485629 NA other downstream 787851 12358008 ~ 12366285 (-)
G1143771 NA other downstream 1072254 12043108 ~ 12081882 (-)
G1145046 LOC106589870 other upstream 131767 13292935 ~ 13294143 (-)
G1145110 LOC106589620 other upstream 195906 13357074 ~ 13360808 (-)
LOC110485696 LOC106564559 other upstream 502012 13657453 ~ 13665295 (-)
LOC110485704 NA other upstream 642398 13798679 ~ 13812239 (-)

Expression


Co-expression Network