LOC110485655 (rab3d)


Basic Information

Item Value
gene id LOC110485655
gene name rab3d
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13163816 ~ 13178960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940288.1
GTAAAGACACTGGCATGTTGAAACCCTACTCATATGTCTACATAGCACACTATCGCTGATACTAAAGCTGATTGTGGTTTTCTTTTAACTACGCTGATCCTTGTATGTTTTCTCATCTATATCGATTTAATATTTAGTAATATAGGCCTGCAATATTTGAGTAACTGTTGTAGAGGAAAAGGTGGAGAATCTTGTATTTGTTTGCCTGGTTGACTATACATTTCCTCTGAACTGTAACAATATAAACTTTGTTGAACGAGAGGGGGAGAAAATAAGAACACTAACAATACATCAAAAAGCAACAATGTTGAAACGCACAACGCGCACCCCTGTGCGCACGGCACTCGTTAACTACCTTTGAAGTTCAGCAAACGggcaacactacatacagaggtTGTGTGAACGTGGATTCATCGCTGTTCTCTGGGTCGGTCTGTCGGTGACACTGGATTAATATAGGGAAACTTCCGCAGCCTTCCATATCGCAAAAATCTACGGAGGAGCGAGCATGAGATCCGGGAGTACCATACAGTAGGCGAGAGGAAAGAAAGACATCGAGTTGGAACGGGAGGAGGGAGTGGACGAAAAAAACGATTCACACACTGGATTTAAGATGGCGCTGGCGAGCGACCCCGGTGCCGGCCAGCAGCAGACCCAGGCCCAGAAGGATGCCGCGGACCAGAACTTTGACTACATGTTCAAGCTGCTGATCATCGGCAACAGCAGCGTGGGGAAGACCAGCTTACTCTTCCGCTACGCTGATGACTCCTTTACCTCTGCCTTCGTCTCCACCGTGGGCATCGACTTCAAGGTTAAGACTGTCTACCGCAACGAGAAGAGGGTCAAGCTACAGATCTGGgacaCGGCGGGGCAGGAGCGTTACAGGACCATCACCACAGCCTACTACAGAGGAGCCATGGGCTTCCTGCTCATGTATGACATCACCAACCAGGACTCCTTCTATGCTGTGCAGGACTGGGCGACCCAGATCAAGACGTACTCGTGGGACAACGCCCAGGTGATCCTGGTGGGGAACAAGGCTGACCTGGAGGACGACAGGCTGGTACCAGCAGAGGACGGACAGAGATTGGCTGATGAACTGGgGTTCCAATTCTTCGAGGCCAGTGCCAAAGACAACATCAACGTGAAGCAGGTGTTCGAGCGTCTCGTCGACGTCATCTGCGAGAAGATGAGCGAGAGCGTGAATGGGGAGCCCAGCCCATTGGCCAATCACAAGGGCCCCAGCCTGCAAGACACGCCCCCAGACAAGGGTGGCTGCTCCTGCTGATAACGCCTTAAACATACATACCGTATACatgctcgtacacacacacacactgaaaaaatTAAATACACAACCACTCCCACACACGCTCATTGACTTGCCAGAAATCTAGCGTTGTGAATGTACTTTTGGTTTTGTATAACATTGTTGCTACTATCCCTATTACCGACTGGTTCCCCAGTCTCTTGCACTCACTTTGCTTCTAACAACAGATTTCACATCAGTCCTCTTGTTTAGAATGAGCTGATGGAATGTATTTTGCTATAGGATAAGCTTCTCGGAGTAGTGTGACGTTtcccctagacgctgatcttgggtcagttttaccttccccccactaatggttaggattggggagggtaagctgatcctagatctgtacctaggggagaCTTCATCTGGGAACCTTCCCACAACCCAAGCCTAGCCTGAGAACTGTTGTTCAGGGCTGTAGTTCAGATATGTTTGATTGTGTCTTGATCATACTGCCCCCATGTGGATATTGAATGTTACTGCAGCAATAATGGAAGCACCCACTAATAGTGTCAATAGCTCAGGTGGGTCTGCTTAACGACAATGTAGGGCCCTGAGTTTCTCCTGGCTGCTTGGTGGAAAAACTCAAGGCCCGATACTAAGGGAGCGTCTAGAGGGCTGGCTTATGAGGCTATTGCTTAGGAATGTTCATCTGTAGCCTATACACTGTAAAACCAAAATGTCAGGTCAACTATGACTAACCAACCAACTTGCCAAAGTTTGTTGACTCAACTAGATGTTGGgggtcaattcaatttcaatgcaGTCAATTCAGAAGCTGAACTTCCATTTTTATTCTCATGGAGTAACGTTGAGGAGAATTTAGAATTTCAGGTTACTCTCTGCATTGGCTGAATTGAAAAGGAATTGACCCCCAACCGTGCTGGACCTTCCTGCCCTGCACTGTCCCACTAACTACTGGAACTGAATGAGCTATTAGATTCTACATCAGACATTGAATGGAAAAACGACTTACTATATTTGTGTCTGGTTTGGTTGTGTTTTATAGGTTCATGTCTTAGTGCTCAGGTCAAATGTGAAAGTCAGAGCATGATTTCGTTTGATTAATGTCAGTCAATGACTGTCTGCTCAATCCCCTCGaatgaatgaaataaaaaatgtaatgtcaATTGAATGAA
>TU1306063
TGAAATTGCACAACTCAATTGGCCTCTGGGTCACCATAATCATAACGTTCTTTAACTGGTCGTTCGTTACAGGACCGTTTCCGTGGAGCTAAACGTTAAAACGGTGTGTGTCGTACTGAACGCACCCCTGGTCTAGGAGTTGCACTGCTTCAACTGTTTCCCCCTCTCCGCTCCTAGATGGCGCTGGCGAGCGACCCCGGTGCCGGCCAGCAGCAGACCCAGGCCCAGAAGGATGCCGCGGACCAGAACTTTGACTACATGTTCAAGCTGCTGATCATCGGCAACAGCAGCGTGGGGAAGACCAGCTTACTCTTCCGCTACGCTGATGACTCCTTTACCTCTGCCTTCGTCTCCACCGTGGGCATCGACTTCAAGGTTAAGACTGTCTACCGCAACGAGAAGAGGGTCAAGCTACAGATCTGGgacaCGGCGGGGCAGGAGCGTTACAGGACCATCACCACAGCCTACTACAGAGGAGCCATGGGCTTCCTGCTCATGTATGACATCACCAACCAGGACTCCTTCTATGCTGTGCAGGACTGGGCGACCCAGATCAAGACGTACTCGTGGGACAACGCCCAGGTGATCCTGGTGGGGAACAAGGCTGACCTGGAGGACGACAGGCTGGTACCAGCAGAGGACGGACAG
>TU1306064
TGAAATTGCACAACTCAATTGGCCTCTGGGTCACCATAATCATAACGTTCTTTAACTGGTCGTTCGTTACAGGACCGTTTCCGTGGAGCTAAACGTTAAAACGGTGTGTGTCGTACTGAACGCACCCCTGGTCTAGGAGTTGCACTGCTTCAACTGTTTCCCCCTCTCCGCTCCTAGATGGCGCTGGCGAGCGACCCCGGTGCCGGCCAGCAGCAGACCCAGGCCCAGAAGGATGCCGCGGACCAGAACTTTGACTACATGTTCAAGCTGCTGATCATCGGCAACAGCAGCGTGGGGAAGACCAGCTTACTCTTCCGCTACGCTGATGACTCCTTTACCTCTGCCTTCGTCTCCACCGTGGGCATCGACTTCAAGGTTAAGACTGTCTACCGCAACGAGAAGAGGGTCAAGCTACAGATCTGGgacaCGGCGGGGCAGGAGCGTTACAGGACCATCACCACAGCCTACTACAGAGGAGCCATGGGCTTCCTGCTCATGTATGACATCACCAACCAGGACTCCTTCT
>TU1306065
ATACATCAAAAAGCAACAATGTTGAAACGCACAACGCGCACCCCTGTGCGCACGGCACTCGTTAACTACCTTTGAAGTTCAGCAAACGggcaacactacatacagaggtTGTGTGAACGTGGATTCATCGCTGTTCTCTGGGTCGGTCTGTCGGTGACACTGGATTAATATAGGGAAACTTCCGCAGCCTTCCATATCGCAAAAATCTACGGAGGAGCGAGCATGAGATCCGGGAGTACCATACAGTAGGCGAGAGGAAAGAAAGACATCGAGTTGGAACGGGAGGAGGGAG

Function

symbol description
rab3d Enables myosin V binding activity. Involved in bone resorption and positive regulation of regulated secretory pathway. Located in cytoplasmic microtubule and secretory vesicle.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940288.1 False 2457 mRNA 0.47 5 13163816 13178960
TU1306063 False 648 TUCP 0.56 3 13165514 13171157
TU1306064 False 526 TUCP 0.55 2 13165912 13171157
TU1306065 True 292 lncRNA 0.50 1 13178383 13178674

Neighbor

gene id symbol gene type direction distance location
LOC110485650 LOC106589714 coding downstream 2648 13154136 ~ 13161168 (-)
LOC110516103 LOC106589920 coding downstream 11970 13144075 ~ 13151846 (-)
LOC110487275 LOC106589720 coding downstream 19879 13141743 ~ 13143937 (-)
LOC110485647 LOC106589946 coding downstream 79934 12908759 ~ 13083882 (-)
LOC110485643 LOC106590024 coding downstream 259135 12900622 ~ 12904681 (-)
LOC110487513 LOC106589682 coding upstream 635 13179595 ~ 13185984 (-)
LOC118938212 LOC106589906 coding upstream 31910 13210870 ~ 13262316 (-)
LOC110487278 LOC106589852 coding upstream 152555 13331515 ~ 13346367 (-)
LOC110485678 LOC106589534 coding upstream 260738 13439698 ~ 13458698 (-)
LOC110485679 LOC106564573 coding upstream 284029 13462989 ~ 13470981 (-)
G1145051 NA non-coding downstream 1508 13161890 ~ 13162308 (-)
G1145035 NA non-coding downstream 38539 13124870 ~ 13126598 (-)
G1145019 NA non-coding downstream 110816 13050008 ~ 13053000 (-)
G1144987 NA non-coding downstream 230519 12932587 ~ 12933297 (-)
G1145064 NA non-coding upstream 8383 13187343 ~ 13187920 (-)
G1145069 NA non-coding upstream 10468 13189428 ~ 13213171 (-)
G1145063 NA non-coding upstream 16465 13195425 ~ 13196688 (-)
G1145043 NA non-coding upstream 27691 13206651 ~ 13209542 (-)
G1145123 NA non-coding upstream 108371 13287331 ~ 13288035 (-)
G1144338 NA other downstream 545658 12617959 ~ 12618158 (-)
G1144335 LOC106564512 other downstream 548257 12614976 ~ 12615559 (-)
LOC110485629 NA other downstream 797531 12358008 ~ 12366285 (-)
G1143771 NA other downstream 1081934 12043108 ~ 12081882 (-)
G1145046 LOC106589870 other upstream 113975 13292935 ~ 13294143 (-)
G1145110 LOC106589620 other upstream 178114 13357074 ~ 13360808 (-)
LOC110485696 LOC106564559 other upstream 484220 13657453 ~ 13665295 (-)
LOC110485704 NA other upstream 624606 13798679 ~ 13812239 (-)
G1145789 LOC106588930 other upstream 907992 14086952 ~ 14087567 (-)
LOC110485655 rab3d other downstream 7226 13163816 ~ 13178960 (-)

Expression


Co-expression Network