LOC110487513 (LOC106589682)


Basic Information

Item Value
gene id LOC110487513
gene name LOC106589682
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13179595 ~ 13185984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940289.1
tcgatagcgcgccgaacctcgggctagaaggtcgagggttcgagacttgctccctgctgtttcattaaaTTCATTACAATAATAATACATGTTCAACCGTTTTAACAACTGTCCACTGATTGGTGGAAACGTTGCAAATATCCCGCGAGTTTTAAATTGATTGACAGCTCTAGAGCACTCGTCGACGTTCGTCTTCGTGGTCCACTCAATTAAAAGTCCATCGTGAAAACAGATGCTCGACGGCggtgaaaaaagtcaagATGTCAGTGGTTCAGATGGTGAAGATCGTGGGTCTGGGGGCTGTGGCCCTCACTCTCAGTGtggagtggttgggctggctctTCTGTCGCCTCTGGCCCCGGAAAATATCCAGAGGGCCCCTGAAAGAAGTATTCTTTTTCCCTACAGAGGTCGCCTGCACTGAGCATCTCTTCACTCCTAACTCACCATTcccctgCCCCTGTCCTTTACCCCACAACATCAACACCTCCTTCACCCGTCTCCTGGGCCACATCctgtctgcctcctcctccttggACCTGTGTGTCTTCGCATTTACCAACCTGGACCTGAGCCGGGCCGTGCTGGCACTCCACACCAGGGGCATCCCCATCCGTATCCTCACTGACATGGACTACACCCTCATCACCGGCTCCCAGATAGGGGCCATCCGCAGAGCAGGCATCTGTGTGAGGTGTGACTCCGGCGCCGTCCACATGCACCACAAGTTCGCCGTGGTGGACGGCCGGCGCCTAATCACCGGCTCCCTGAACTGGACGCTGACAGCCATCCAGAGCAACAAGGAGAACATCCTGGTCACGGAGGAACCAGATCTAGTCCTGCCCTTCATCACTGAGTTCCAGAGGCTCTGGGATGTCAATGACCCGGCTAGGAGACACCTGCCGTCCATCGCTGAGAAACCTGCTAGTTTAGtactatagagagacagagaaacatggCTGAAATGTTTGTATGGTGCAGTAGCTGGTGGTTACTTTTGGTACGGTGATTATGTAgaatgtttttttatattttccatTTGTGAGAAACCTGCTAGTTTAGtactatagagagacagagaaacatggCTGAAATGTTTGTATGGTGCAGTAGCTGGTGGTTACTTTTGGTACGGTGATTATGTAgaatgtttttttatattttccatTTGTGAGAAACCTGCTAGTTTAGTATTATGGATAGAAAGGTGTATGGTCCTTATCTGGGACAAACCTGTCCAAATAAAAACAGTATTTATATAAGTGTAGTGTGGTACATTAGGATTGGGCAGTACTGGTCAAGTACATGATGTATAATTTGGGtagttttatatttttttcaatctCAGATAAACCTGCTCATCCACATCTTATCAGAGAAACCAGCTTTCTTCGTAATGTAGATAGACTGAGAGAAACATGGCTTTCATCTGTAGTAATCACTGCTTTAGACTGGTGTGGGGATGATGTAGAATGGGTAGTTTGATATTTTGTACTTGGAAGTTTATAGTTTTACATTGTTTACATTGAGGTATTTTGTTATTGTACACAATGTTGTATATATTTTAATACAAAGTCATTagaattgtttttttgttttgtttaatgttaTATTGGATAACTAAAAGATACAAAACAAATTCCTATGTTAAATGCTATATTTAAAGTAAGATTTGATTACAGTATTTAGATAAAGATAGAAATAGTGAGAATACTTAATGTTAACTCAGTCCATCCTATGGCTTATCATTAAGAACCAGACCAGTATGCCTAGTCAGAACAATTGCACTGAGAGATAAGTGGTGCATTGCAGTCACGCAGAAGATATTTGTAATGCTTCTCAGAGCACACAGCTCAAATTAAAAATCCACTCTACTG
>XM_036940290.1
tcgatagcgcgccgaacctcgggctagaaggtcgagggttcgagacttgctccctgctgtttcattaaaTTCATTACAATAATAATACATGTTCAACCGTTTTAACAACTGTCCACTGATTGGTGGAAACGTTGCAAATATCCCGCGAGTTTTAAATTGATTGACAGCTCTAGAGCACTCGTCGACGTTCGTCTTCGTGGTCCACTCAATTAAAAGTCCATCGTGAAAACAGATGCTCGACGGCggtgaaaaaagtcaagACCTCAACTATCATTAGCTGTCAAGACTTCACCCTAGCAAGGCTAATCCTAACCAAGAGCTGAAAGGCAGGGGAAAAGATGTCAGTGGTTCAGATGGTGAAGATCGTGGGTCTGGGGGCTGTGGCCCTCACTCTCAGTGtggagtggttgggctggctctTCTGTCGCCTCTGGCCCCGGAAAATATCCAGAGGGCCCCTGAAAGAAGTATTCTTTTTCCCTACAGAGGTCGCCTGCACTGAGCATCTCTTCACTCCTAACTCACCATTcccctgCCCCTGTCCTTTACCCCACAACATCAACACCTCCTTCACCCGTCTCCTGGGCCACATCctgtctgcctcctcctccttggACCTGTGTGTCTTCGCATTTACCAACCTGGACCTGAGCCGGGCCGTGCTGGCACTCCACACCAGGGGCATCCCCATCCGTATCCTCACTGACATGGACTACACCCTCATCACCGGCTCCCAGATAGGGGCCATCCGCAGAGCAGGCATCTGTGTGAGGTGTGACTCCGGCGCCGTCCACATGCACCACAAGTTCGCCGTGGTGGACGGCCGGCGCCTAATCACCGGCTCCCTGAACTGGACGCTGACAGCCATCCAGAGCAACAAGGAGAACATCCTGGTCACGGAGGAACCAGATCTAGTCCTGCCCTTCATCACTGAGTTCCAGAGGCTCTGGGATGTCAATGACCCGGCTAGGAGACACCTGCCGTCCATCGCTGAGAAACCTGCTAGTTTAGtactatagagagacagagaaacatggCTGAAATGTTTGTATGGTGCAGTAGCTGGTGGTTACTTTTGGTACGGTGATTATGTAgaatgtttttttatattttccatTTGTGAGAAACCTGCTAGTTTAGtactatagagagacagagaaacatggCTGAAATGTTTGTATGGTGCAGTAGCTGGTGGTTACTTTTGGTACGGTGATTATGTAgaatgtttttttatattttccatTTGTGAGAAACCTGCTAGTTTAGTATTATGGATAGAAAGGTGTATGGTCCTTATCTGGGACAAACCTGTCCAAATAAAAACAGTATTTATATAAGTGTAGTGTGGTACATTAGGATTGGGCAGTACTGGTCAAGTACATGATGTATAATTTGGGtagttttatatttttttcaatctCAGATAAACCTGCTCATCCACATCTTATCAGAGAAACCAGCTTTCTTCGTAATGTAGATAGACTGAGAGAAACATGGCTTTCATCTGTAGTAATCACTGCTTTAGACTGGTGTGGGGATGATGTAGAATGGGTAGTTTGATATTTTGTACTTGGAAGTTTATAGTTTTACATTGTTTACATTGAGGTATTTTGTTATTGTACACAATGTTGTATATATTTTAATACAAAGTCATTagaattgtttttttgttttgtttaatgttaTATTGGATAACTAAAAGATACAAAACAAATTCCTATGTTAAATGCTATATTTAAAGTAAGATTTGATTACAGTATTTAGATAAAGATAGAAATAGTGAGAATACTTAATGTTAACTCAGTCCATCCTATGGCTTATCATTAAGAACCAGACCAGTATGCCTAGTCAGAACAATTGCACTGAGAGATAAGTGGTGCATTGCAGTCACGCAGAAGATATTTGTAATGCTTCTCAGAGCACACAGCTCAAATTAAAAATCCACTCTACTG
>XM_036940291.1
tcgatagcgcgccgaacctcgggctagaaggtcgagggttcgagacttgctccctgctgtttcattaaaTTCATTACAATAATAATACATGTTCAACCGTTTTAACAACTGTCCACTGATTGGTGGAAACGTTGCAAATATCCCGCGAGTTTTAAATTGATTGACAGCTCTAGAGCACTCGTCGACGTTCGTCTTCGTGGTCCACTCAATTAAAAGTCCATCGTGAAAACAGATGCTCGACGGCggtgaaaaaagtcaagATGTCAGTGGTTCAGATGGTGAAGATCGTGGGTCTGGGGGCTGTGGCCCTCACTCTCAGTGtggagtggttgggctggctctTCTGTCGCCTCTGGCCCCGGAAAATATCCAGAGGGCCCCTGAAAGAAGTATTCTTTTTCCCTACAGAGGTCGCCTGCACTGAGCATCTCTTCACTCCTAACTCACCATTcccctgCCCCTGTCCTTTACCCCACAACATCAACACCTCCTTCACCCGTCTCCTGGGCCACATCctgtctgcctcctcctccttggACCTGTGTGTCTTCGCATTTACCAACCTGGACCTGAGCCGGGCCGTGCTGGCACTCCACACCAGGGGCATCCCCATCCGTATCCTCACTGACATGGACTACACCCTCATCACCGGCTCCCAGATAGGGGCCATCCGCAGAGCAGGCATCTGTGTGAGGTGTGACTCCGGCGCCGTCCACATGCACCACAAGTTCGCCGTGGTGGACGGCCGGCGCCTAATCACCGGCTCCCTGAACTGGACGCTGACAGCCATCCAGAGCAACAAGGAGAACATCCTGGTCACGGAGGAACCAGATCTAGTCCTGCCCTTCATCACTGAGTTCCAGAGGCTCTGGGATGTCAATGACCCGGCTAGGAGACACCTGCCGTCCATCGCTGAGAAACCTGCTAGTTTAGtactatagagagacagagaaacatggCTGAAATGTTTGTATGGTGCAGTAGCTGGTGGTTACTTTTGGTACGGTGATTATGTAgaatgtttttttatattttccatTTGTGAGAAACCTGCTAGTTTAGTATTATGGATAGAAAGGTGTATGGTCCTTATCTGGGACAAACCTGTCCAAATAAAAACAGTATTTATATAAGTGTAGTGTGGTACATTAGGATTGGGCAGTACTGGTCAAGTACATGATGTATAATTTGGGtagttttatatttttttcaatctCAGATAAACCTGCTCATCCACATCTTATCAGAGAAACCAGCTTTCTTCGTAATGTAGATAGACTGAGAGAAACATGGCTTTCATCTGTAGTAATCACTGCTTTAGACTGGTGTGGGGATGATGTAGAATGGGTAGTTTGATATTTTGTACTTGGAAGTTTATAGTTTTACATTGTTTACATTGAGGTATTTTGTTATTGTACACAATGTTGTATATATTTTAATACAAAGTCATTagaattgtttttttgttttgtttaatgttaTATTGGATAACTAAAAGATACAAAACAAATTCCTATGTTAAATGCTATATTTAAAGTAAGATTTGATTACAGTATTTAGATAAAGATAGAAATAGTGAGAATACTTAATGTTAACTCAGTCCATCCTATGGCTTATCATTAAGAACCAGACCAGTATGCCTAGTCAGAACAATTGCACTGAGAGATAAGTGGTGCATTGCAGTCACGCAGAAGATATTTGTAATGCTTCTCAGAGCACACAGCTCAAATTAAAAATCCACTCTACTG

Function

NR:

description
mitochondrial cardiolipin hydrolase-like

GO: NA

KEGG:

id description
K16862 PLD6; mitochondrial cardiolipin hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940289.1 False 1877 mRNA 0.44 4 13179595 13185984
XM_036940290.1 False 1955 mRNA 0.44 5 13179595 13185984
XM_036940291.1 True 1748 mRNA 0.44 5 13179595 13185984

Neighbor

gene id symbol gene type direction distance location
LOC110485655 rab3d coding downstream 635 13163816 ~ 13178960 (-)
LOC110485650 LOC106589714 coding downstream 18427 13154136 ~ 13161168 (-)
LOC110516103 LOC106589920 coding downstream 27749 13144075 ~ 13151846 (-)
LOC110487275 LOC106589720 coding downstream 35658 13141743 ~ 13143937 (-)
LOC110485647 LOC106589946 coding downstream 95713 12908759 ~ 13083882 (-)
LOC118938212 LOC106589906 coding upstream 24886 13210870 ~ 13262316 (-)
LOC110487278 LOC106589852 coding upstream 145531 13331515 ~ 13346367 (-)
LOC110485678 LOC106589534 coding upstream 253714 13439698 ~ 13458698 (-)
LOC110485679 LOC106564573 coding upstream 277005 13462989 ~ 13470981 (-)
LOC110485677 LOC106564572 coding upstream 285240 13471224 ~ 13494372 (-)
G1145051 NA non-coding downstream 17287 13161890 ~ 13162308 (-)
G1145035 NA non-coding downstream 54318 13124870 ~ 13126598 (-)
G1145019 NA non-coding downstream 126595 13050008 ~ 13053000 (-)
G1144987 NA non-coding downstream 246298 12932587 ~ 12933297 (-)
G1145064 NA non-coding upstream 1359 13187343 ~ 13187920 (-)
G1145069 NA non-coding upstream 3444 13189428 ~ 13213171 (-)
G1145063 NA non-coding upstream 9441 13195425 ~ 13196688 (-)
G1145043 NA non-coding upstream 20667 13206651 ~ 13209542 (-)
G1145123 NA non-coding upstream 101347 13287331 ~ 13288035 (-)
G1144338 NA other downstream 561437 12617959 ~ 12618158 (-)
G1144335 LOC106564512 other downstream 564036 12614976 ~ 12615559 (-)
LOC110485629 NA other downstream 813310 12358008 ~ 12366285 (-)
G1145046 LOC106589870 other upstream 106951 13292935 ~ 13294143 (-)
G1145110 LOC106589620 other upstream 171090 13357074 ~ 13360808 (-)
LOC110485696 LOC106564559 other upstream 477196 13657453 ~ 13665295 (-)
LOC110485704 NA other upstream 617582 13798679 ~ 13812239 (-)
G1145789 LOC106588930 other upstream 900968 14086952 ~ 14087567 (-)

Expression


Co-expression Network