LOC110485695 (LOC106564561)


Basic Information

Item Value
gene id LOC110485695
gene name LOC106564561
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13665802 ~ 13672084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940335.1
TTGGTACATCCCATTTGCTGACCTGTACACACAAGATGGCAGCTTCGTTGGAAGAAGAATTTGAAGATGCGCCCGATGTGGAGCCTTTAGAACCAACATTGAAAAACATTATAGAGCAGAAATCTCTGAAATGGATATTTGTTGGAGGCAAAGGTGGCGTTGGCAAAACAACATGCAGCTGCAGTCTGGCTGTACAGCTGGCTGCGGTGCGTGACAGCGTGCTCATCATCTCCACTGACCCGGCACACAACATCTCAGATGCCTTTGACCAGAAGTTCTCTAAGGTGCCCACAAAAGTCAAGGGCTACGAGAACCTCTTCGCTATGGAGATTGACCCCAGCCTGGGTGTGGCGGAGCTCCCAGATGAGTTCTTTGAAGAGGACAACATGCTGAGTATGGGCAAGAAGATGATGCAGGAGGCCATGAGCGCCTTCCCCGGCATCGACGAGGCCATGAGCTACGCAGAGGTCATGAGGTTAGTGAAAGGCATGAACTTCTCTGTGGTGGTGTTCGACACTGCCCCCACTGGCCACACGCTACGTCTGCTCAACTTCCCCACCATAGTGGAGAGAGGCCTGGGACGACTCATGCAGATCAAGAACCAGATCAGTCCCTTCATCTCACAGATGTGTAACATGCTGGGTCTGGGAGACATgaacgcagaccagctggcctcTAAGCTGGAGGAGACCCTACCAGTCATCCGCTCTGTCAGTGAGCAGTTCAAAGACCCTGAACAAACAACGTTTATCTGTGTGTGCATCGCCGAGTTCCTGTCCTTGTACGAGACGGAGCGCCTGATCCAGGAGCTGGCCAAGTGTCGCATCGACACGCACAACATTATCGTCAACCAGCTGGTGTTCCCCGACTCAGACCGGCCATGCAAGATGTGCGAGGCCCGCCACAAGATCCAGTCCAAGTACCTGGACCAGATGGAGGATCTATATGAAGATTTCCACATAATCAAGTTACCGCTGCTGCCCCACGAGGTACGGGGGTCCGAAAAAGTCAACACCTTCTCAATGCAACTCCTGGAGCCCTACATCCCCCCTACCAAGTGATTGACCTCTGACTCCCAGTCGCAGTCTGAACTCACCATCTCCGTCCCCCTTGACCCCAGCCTCACTCCTGCATTACAGCAACCCAGCAAGAACATCCCCATCCTCTTCATCTTCAGGAACCTAAACCACTACAGCaagaacgacacacacacacacacacacacacacacacacacacacacacacagggggcgGACAACACAGAACACAAGGACACACAACCACCTGCTCCTGTTGTAGGCCTACAGTCTAAAAGCGAAAGGAGGATCCACATGTgatttctctctcctttcacttTTCTCTATCATTCTATCTATACCATTCTCTCCATCATATCTCACCAGGGAAAGATGAACTATTCCTAAAGAATTTAACTTTTCCCAGAGGAACActcaaggccccccccccccctttctcctctcctcctcctcctgcctccaTCCTATTTTTCCTTCCATATTCCAGCCTCAGTAATGTACAAGTGAAACTATCCCTAATGGCTGAGTTTGGTgccgctgctgtgtttttcagtaTAAAACAGCTTTGAGACGATGGACTGCATCTTTGGTTTTTACCATGTGGTTTAATTAGACTGTATCTGTTTGgtttgcatctgaaatggcaccctattccctgtatagtgcattaTTGCCAcacattttgaccagggccctggtcaaaagtagtgcactatatatagggaatagggtgccattttggatgcacatTCTGACTTCTTAATGCCCTCCATTGTGGGAATGGAGAATAATATGAGTCGTGGGAAAGTTTAGTCTGTTTTGGATGAAGGTGGGTGTGTGATGCAGGGTGAGGACTTACGACCCCAGGGTGAATAGTCATTATGAAGAGGGATATAGGCCTAGAGGGAAGGGTTTTCAGATCATGTTATATTTCTGTCCCACCAATCCCATCAGTCCACTGACCAGCCTTAGAAGAGCATTTGAATACTTGAGTAATAATAGCATGGACATACTTAACTACATTATTTGACCAAAATGTTGTTCTCACGCACCACATGTTTATGGTGTAAATAACATGGCCCCACCTACATTTAGTTCAGCTCTTGGATAAAGAAATTATATTTATTGATCACTGAGCAGTGTCATTCATCTATAATCTACAGTATCAGATGGCTACTTGTAATTATTTTATGCCAATGTCATTGTTTTCGCTACTCTAGGATGCCACTGAAGCAGTCTTTGTGTAAAGCTTTTAAAGTGCTACTTTTCTCTCTAGCCTGGTTGAACCAGACTGAATGCTGCACTCACCATTGAGTACAGTGTTCAGCCTGGGTGGGGGGGACTTAGCCTGGTTAAACAAATCTCTTtctccctggtcaaaagtagtgcattttaTATAGGGAATGGTGTGCTGTTTCAGACACACCCTGTCTGTTGTGTAGAGGGCTCTCTATTTGGGTACACAGCGTGATGCTAGTTGGCTACTTGGCTTAATGAATGCCTTAATGCATTATAATATACAATTGATTACTGAATGTTGATTGGTCCCCTGTTGAAAGGTTGGTTCATTATTTAGCTCCTATTTAGACATCATCCAGTGTGGGATTTTTGTGTTGCCTGCATTTTTGCATtggtgcacaattggcacagcttTTTTGATCCACAGGCAAAATATCCCACTAGCTGTCAATTTGACTTGTCATCAAGATAGTCACACACCAGAAGTGGTCATTATACTACCAGCTATAGCCCCATAATCTCTGCAGTAGCAACACAAGTCTTGGAAGGGtccttttgatttgattttgtccaTGCAATGTTATTAATGCTTCAAGTTatgcataccccccccccccccaggcaatTGTTAAACTTactaaataaaaaacaaacatgtcTAATTCGCAGGGA

Function

NR:

description
ATPase asna1

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006810 transport biological_process
GO:0045048 protein insertion into ER membrane biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K01551 arsA, ASNA1, GET3; arsenite/tail-anchored protein-transporting ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940335.1 True 2950 mRNA 0.47 7 13665802 13672084

Neighbor

gene id symbol gene type direction distance location
LOC110485696 LOC106564559 coding downstream 507 13657453 ~ 13665295 (-)
LOC100136256 LOC100136256 coding downstream 44224 13619768 ~ 13652557 (-)
LOC110485698 LOC106564568 coding downstream 51719 13600728 ~ 13614083 (-)
LOC110485683 LOC106589359 coding downstream 115138 13544642 ~ 13550664 (-)
LOC110485687 LOC106564530 coding downstream 123734 13525979 ~ 13542068 (-)
LOC110485694 LOC106564562 coding upstream 2566 13674650 ~ 13681639 (-)
LOC110485693 LOC106589449 coding upstream 17679 13689763 ~ 13698310 (-)
c13h22orf23 cssa12h22orf23 coding upstream 50737 13722821 ~ 13726634 (-)
LOC110485690 sox10 coding upstream 56428 13728512 ~ 13733700 (-)
LOC110485689 LOC106564549 coding upstream 81012 13753096 ~ 13762248 (-)
G1145292 NA non-coding downstream 4584 13660558 ~ 13661218 (-)
G1145234 NA non-coding downstream 109512 13556069 ~ 13556290 (-)
G1145209 NA non-coding downstream 148070 13517440 ~ 13517732 (-)
G1145203 NA non-coding downstream 165142 13499483 ~ 13500660 (-)
G1145224 NA non-coding upstream 17044 13689128 ~ 13700548 (-)
G1145301 NA non-coding upstream 35143 13707227 ~ 13707457 (-)
G1145303 NA non-coding upstream 38539 13710623 ~ 13710888 (-)
G1145305 NA non-coding upstream 39121 13711205 ~ 13711453 (-)
G1145306 NA non-coding upstream 39658 13711742 ~ 13711976 (-)
G1145110 LOC106589620 other downstream 304994 13357074 ~ 13360808 (-)
G1145046 LOC106589870 other downstream 371659 13292935 ~ 13294143 (-)
LOC110485655 rab3d other downstream 494645 13163816 ~ 13178960 (-)
G1145035 NA other downstream 539204 13124870 ~ 13126598 (-)
LOC110485704 NA other upstream 131482 13798679 ~ 13812239 (-)
G1145789 LOC106588930 other upstream 414868 14086952 ~ 14087567 (-)
G1145790 NA other upstream 417574 14089658 ~ 14090787 (-)
G1145830 LOC103354157 other upstream 505163 14177247 ~ 14180330 (-)
G1146251 NA other upstream 1038498 14710582 ~ 14711954 (-)

Expression


Co-expression Network