LOC110485693 (LOC106589449)


Basic Information

Item Value
gene id LOC110485693
gene name LOC106589449
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13689763 ~ 13698310 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556814.2
GGCGGCGCCGCCAGAGGAGGAGAGCTTGGAGTCTCGCGTCAGTGAGTCATACGATGCTTTTACTGCTATAACGACTCAATACGTGACCAATTTACTTTCAGAAAACTGAGACAAAGCCACCAACCCTCTGAACAAGGAGGCGGACTGGGACAGTATCCAGGGCTTCTGTGAACAGCTCAACAATGAGCCTGAAGGtCCTCAACTGGCTACCAGACTTTTGGCCCACAAGATCCAGTCACCCCAAGAATGGGAGGCCATGCAAGCACTAATGGTTCTAGAGATGTGCATGAAGAACTGTGGGAAGAGGTTCCACAATGAAGTGGGCAAATTCCGCTTCCTCAACGAGCTCATCAAGGTGGTCTCACCCAAGTACCTGGGTACTCGGGCCCCAGAGCCAGTGAAGAAGAAGGTTCTGGAGGTGATGTTCAGTTGGACGGTGGGTCTGCCTGACGAGCCCAAGATAGCAGACGCCTACCAGATGCTGAAGAAACAAGGCATTGTGAAGCAGGACCCGGTACTTCCTGATGAGCCCCTCCCACCCCCTCCGCCCAGAACTAAGAGCGTCATCTTTGAGGATGAGGAGAAGTCCAAGATGCTGTCTCGGCTTTTGAATAGCACTCACCCTGAAGATCTAAGAGCAGCAAACAAACTCATTAAGGAAATGGTGCAGGAGGACCAGAAGCGAATGGAGAAGGTGTCTAAGCGTGTGAACGCCATCCAGGAGGTGAAGGAGAGTGTGGGCCTGCTGACCCAGCTACTGGGAGACTATAGCAAGGAGAGCAGCTCCCAGAGCAATCAGGAACTCATCAAGgACCTATACCAGAGCTGTGAAAAGATGAGGCCTACTTTGTTCCGATTGGCTAGCGACACAGAGGACAACGATGAGGCCTTGGCTGACATCCTGCAGGCCAACGACAGCCTGACTCAGGTCATCAACCTGTACAGACAGCTGGTGAAGGGAGAAGAGGTGAACGGAGACAGCACAGCCATGCCCACACTACcagGAAGTAGCACAGCCCTCCTAGACCTGACAGGGTTAGACACATCGCCCACTGGACTTCCCTCCTACCCAGACACCCCCTCACTACAGACCCCGTCACAAGAACTGGGTATCAGCCTGCTAGATGATGAGCTCATGTCACTAGGACTCAATGACGTAACGCCCAACTCTACCCACACCCCTCAGTCGGGAGACTGGAACTCCTTTCAGTGTTCTGACAGTGTAGAGCCAGTCGTCCCAGCGGTGCCTACTGCAACAGTGTTGCTACCGGCCGTGACCCCGATCCCCCAGGCTCCATCAGGGGGGGCCCCCGCTGCTTCCCCTAAAGCCCTGGATGAGTTAGACCTGCTGGGCAAGACCCTGCTGCATCAGTCTCTACCCCCGGGGATGCAGCACGTCAATTGggATAAACTGCAGCCCCAGTCCAGACCCACCCTGCGAGACCTCCAGACCAAGTCCAGTACCAACACTACTAGCACCTCCACCCCCAGCCCTGTCCTGGCCTTCCCCTCGGAGCAGCCTGGGTCTCTCCTAGACTCCCTGCCCAGCCCCGGGCCTCCTACCCCAGCCCCCCAGAACGACATCTCCTTAGCTAACGTGACTGTGCCCCTGGAATCAATCAAGCCCAgCAGCTTGTTACCAGTGACTGTATTTGACAAGCACAGTTTGCGGGTGCTGTTCCACTTTGCCCGTGACTCTCCTCCTTCTCGGCCTGACGTGCTGGTAGTGATCATCTCCATGTTGTCCTCCGCACCCATACCAGTCACCAACATCCGCTTCCAGTCTGCAGTACCCAAGGTGATGAAGGTGAAGCTACAGCCTCCTTCAGGAACTGAGCTTCCAGCCTTCAACCCCATCTTACCCCCAGCCGCCATCACACAGGTCCTACTGCTGGCCAATCCTCACAAGGAGATGGTCCGGTTGCGATACAAGCTCACATTTGACCTGGGAGAAGAATCACATGATGAATCCGGCGATGTAGAACAGTTCCCCCCTCCAGATACCTGGGGGAACCTTTAGTGGGACTGATCAACTTCCTGTCACCTGATCCGCTGCTTCCCTTAGGTGTAGGTCGAAGGTCCCCCCCAAGCACTGGTCCAGGGAAAGATGGTGTTTTTACATTGTGATGGTTATTGGGAAATCTGGTCTTAGACCTGTTATTTGGGATCGGTTTCTCCCTTAAGGGTCACACCAAATGTGTGCTGTTCACTACTGACGTTTTCGCGTAATTCTACATGTAAAATCGGTTTGCACTCAGTTTTCAAATTACGTCCGGTactctgttcagaggtgctaagtacacTCGGCAGGCAAACGCTATTGGTGTGTCCGAGCCCTTATGTCTTCCCATTTGTTATGGATTGAATATCGGCAGGGAAAGTGGATCCTAGATAAGTTATTTGTGGGCAGTTTCTCCCTTATGCCATCCATGTGTCCCAGCCATGATCCACCACCACATGTCCCTATGTTGTCATCTTTCATACTCCATTTGGTGTTTTTCTTGACTGTACTACAATCAGCCCTACAATCTCCAATGCATTACTGTATAATAACCACTTCATGTGATCTGTCCAAAACAAATCATTGCTGTGAGTTCTGAGAGAAGTCGAAGCCTTTTAAACTGAATGTGTGTGGGACTGTTTCTCTCAGGCTATGCCTGATAGCATTATTCTGCACAAAATATGACACTCAAATAGTGTAGTCCCAAAGTATTGTATTATTTGTACGGTGTGAGACCAGTTGGGTCTGTGACTGTTACATGATAAGTTGGGCAGTAGGTGTCTAAAGCTGTAACAAATTTATATCCTGTCCAATCTTCTGTGAAGGAATATCCAATCTATGACGCTATTATTCATTCTATTGAAATCACATGATCACATTGTTTTATGTTTTGATCTAAACAGCAGTTTGGTGCATGCACTTCCTGTTTGGTTTTGTACATGAATATGATTCCCTCTTTAGCTGTCCTGTTCCACCTTCAGCTGTTGACGTTGACCCAAAGGGAGAGGCGTCAGTGCTGACACCGTTTAAATCTGCCGTATGTGCCTAAAGCTGAGAGTTTGTTCTTTATGTATCTTGGTATTTCATTTGGTTTACCTTCCATGTACATACAAATGCTCATTTGTTTTCCCATTTCGGAGTCGGACTACTGATTTTCTTATGAAATTTGGTTATGCTTCCTTTGGTGGGATATGGTCATTGATGATGCGTCCGTTCAATCATATCCACACGGGAGAGTGGAGGCGGAAGCTTTTGCTCCAGTCAAGTAGTACCCGAATCAACCAATAAAATGATTTATAGAAGACTAAGATCAGGTACCATGTTAGTGCTTGGCTAGAAGTAAAGCCAGCAGCCCCACCTGTCTATTGCAGACAGTGGCCCAACCATGCAGCAGCTGCATCTCACGTCATTCTGCAGCTCCCCTCCACATTCCACCTCCCTGCCTTTATTCCCTAGCCTgcatcccagatctgtttgtgctgtcttgtgaACTCAATGACTGTAGGAGCTGGTAAaaccgcccaaacagatctgggactcagGCTACCTATTCCCTGCTCTGACTTTGTAAATAATAAGAATGGTTCTGCAATTATGTACATTTgccaaaaaaaaagtataattaaAGAGAGCAAATAAATATTGACGGGGGAATGGTGAGAATGTAGTGCAAATATGTATTTAAGGGAAATAAAGTTATTCTTTTTCTTGGGG
>XM_021556812.2
TAGGGGGACTACCAAGAATGGCTTGATATGATGACGCCCACGTCGTTGCATGAGACTGGCAAAGTAACGCGATAGCTGCCAGTTAATCGGAATCCCCGAAAATGGCGGCGCCGCCAGAGGAGGAGAGCTTGGAGTCTCGCGTCAACAAAGCCACCAACCCTCTGAACAAGGAGGCGGACTGGGACAGTATCCAGGGCTTCTGTGAACAGCTCAACAATGAGCCTGAAGGtCCTCAACTGGCTACCAGACTTTTGGCCCACAAGATCCAGTCACCCCAAGAATGGGAGGCCATGCAAGCACTAATGGTTCTAGAGATGTGCATGAAGAACTGTGGGAAGAGGTTCCACAATGAAGTGGGCAAATTCCGCTTCCTCAACGAGCTCATCAAGGTGGTCTCACCCAAGTACCTGGGTACTCGGGCCCCAGAGCCAGTGAAGAAGAAGGTTCTGGAGGTGATGTTCAGTTGGACGGTGGGTCTGCCTGACGAGCCCAAGATAGCAGACGCCTACCAGATGCTGAAGAAACAAGGCATTGTGAAGCAGGACCCGGTACTTCCTGATGAGCCCCTCCCACCCCCTCCGCCCAGAACTAAGAGCGTCATCTTTGAGGATGAGGAGAAGTCCAAGATGCTGTCTCGGCTTTTGAATAGCACTCACCCTGAAGATCTAAGAGCAGCAAACAAACTCATTAAGGAAATGGTGCAGGAGGACCAGAAGCGAATGGAGAAGGTGTCTAAGCGTGTGAACGCCATCCAGGAGGTGAAGGAGAGTGTGGGCCTGCTGACCCAGCTACTGGGAGACTATAGCAAGGAGAGCAGCTCCCAGAGCAATCAGGAACTCATCAAGgACCTATACCAGAGCTGTGAAAAGATGAGGCCTACTTTGTTCCGATTGGCTAGCGACACAGAGGACAACGATGAGGCCTTGGCTGACATCCTGCAGGCCAACGACAGCCTGACTCAGGTCATCAACCTGTACAGACAGCTGGTGAAGGGAGAAGAGGTGAACGGAGACAGCACAGCCATGCCCACACTACcagGAAGTAGCACAGCCCTCCTAGACCTGACAGGGTTAGACACATCGCCCACTGGACTTCCCTCCTACCCAGACACCCCCTCACTACAGACCCCGTCACAAGAACTGGGTATCAGCCTGCTAGATGATGAGCTCATGTCACTAGGACTCAATGACGTAACGCCCAACTCTACCCACACCCCTCAGTCGGGAGACTGGAACTCCTTTCAGTGTTCTGACAGTGTAGAGCCAGTCGTCCCAGCGGTGCCTACTGCAACAGTGTTGCTACCGGCCGTGACCCCGATCCCCCAGGCTCCATCAGGGGGGGCCCCCGCTGCTTCCCCTAAAGCCCTGGATGAGTTAGACCTGCTGGGCAAGACCCTGCTGCATCAGTCTCTACCCCCGGGGATGCAGCACGTCAATTGggATAAACTGCAGCCCCAGTCCAGACCCACCCTGCGAGACCTCCAGACCAAGTCCAGTACCAACACTACTAGCACCTCCACCCCCAGCCCTGTCCTGGCCTTCCCCTCGGAGCAGCCTGGGTCTCTCCTAGACTCCCTGCCCAGCCCCGGGCCTCCTACCCCAGCCCCCCAGAACGACATCTCCTTAGCTAACGTGACTGTGCCCCTGGAATCAATCAAGCCCAgCAGCTTGTTACCAGTGACTGTATTTGACAAGCACAGTTTGCGGGTGCTGTTCCACTTTGCCCGTGACTCTCCTCCTTCTCGGCCTGACGTGCTGGTAGTGATCATCTCCATGTTGTCCTCCGCACCCATACCAGTCACCAACATCCGCTTCCAGTCTGCAGTACCCAAGGTGATGAAGGTGAAGCTACAGCCTCCTTCAGGAACTGAGCTTCCAGCCTTCAACCCCATCTTACCCCCAGCCGCCATCACACAGGTCCTACTGCTGGCCAATCCTCACAAGGAGATGGTCCGGTTGCGATACAAGCTCACATTTGACCTGGGAGAAGAATCACATGATGAATCCGGCGATGTAGAACAGTTCCCCCCTCCAGATACCTGGGGGAACCTTTAGTGGGACTGATCAACTTCCTGTCACCTGATCCGCTGCTTCCCTTAGGTGTAGGTCGAAGGTCCCCCCCAAGCACTGGTCCAGGGAAAGATGGTGTTTTTACATTGTGATGGTTATTGGGAAATCTGGTCTTAGACCTGTTATTTGGGATCGGTTTCTCCCTTAAGGGTCACACCAAATGTGTGCTGTTCACTACTGACGTTTTCGCGTAATTCTACATGTAAAATCGGTTTGCACTCAGTTTTCAAATTACGTCCGGTactctgttcagaggtgctaagtacacTCGGCAGGCAAACGCTATTGGTGTGTCCGAGCCCTTATGTCTTCCCATTTGTTATGGATTGAATATCGGCAGGGAAAGTGGATCCTAGATAAGTTATTTGTGGGCAGTTTCTCCCTTATGCCATCCATGTGTCCCAGCCATGATCCACCACCACATGTCCCTATGTTGTCATCTTTCATACTCCATTTGGTGTTTTTCTTGACTGTACTACAATCAGCCCTACAATCTCCAATGCATTACTGTATAATAACCACTTCATGTGATCTGTCCAAAACAAATCATTGCTGTGAGTTCTGAGAGAAGTCGAAGCCTTTTAAACTGAATGTGTGTGGGACTGTTTCTCTCAGGCTATGCCTGATAGCATTATTCTGCACAAAATATGACACTCAAATAGTGTAGTCCCAAAGTATTGTATTATTTGTACGGTGTGAGACCAGTTGGGTCTGTGACTGTTACATGATAAGTTGGGCAGTAGGTGTCTAAAGCTGTAACAAATTTATATCCTGTCCAATCTTCTGTGAAGGAATATCCAATCTATGACGCTATTATTCATTCTATTGAAATCACATGATCACATTGTTTTATGTTTTGATCTAAACAGCAGTTTGGTGCATGCACTTCCTGTTTGGTTTTGTACATGAATATGATTCCCTCTTTAGCTGTCCTGTTCCACCTTCAGCTGTTGACGTTGACCCAAAGGGAGAGGCGTCAGTGCTGACACCGTTTAAATCTGCCGTATGTGCCTAAAGCTGAGAGTTTGTTCTTTATGTATCTTGGTATTTCATTTGGTTTACCTTCCATGTACATACAAATGCTCATTTGTTTTCCCATTTCGGAGTCGGACTACTGATTTTCTTATGAAATTTGGTTATGCTTCCTTTGGTGGGATATGGTCATTGATGATGCGTCCGTTCAATCATATCCACACGGGAGAGTGGAGGCGGAAGCTTTTGCTCCAGTCAAGTAGTACCCGAATCAACCAATAAAATGATTTATAGAAGACTAAGATCAGGTACCATGTTAGTGCTTGGCTAGAAGTAAAGCCAGCAGCCCCACCTGTCTATTGCAGACAGTGGCCCAACCATGCAGCAGCTGCATCTCACGTCATTCTGCAGCTCCCCTCCACATTCCACCTCCCTGCCTTTATTCCCTAGCCTgcatcccagatctgtttgtgctgtcttgtgaACTCAATGACTGTAGGAGCTGGTAAaaccgcccaaacagatctgggactcagGCTACCTATTCCCTGCTCTGACTTTGTAAATAATAAGAATGGTTCTGCAATTATGTACATTTgccaaaaaaaaagtataattaaAGAGAGCAAATAAATATTGACGGGGGAATGGTGAGAATGTAGTGCAAATATGTATTTAAGGGAAATAAAGTTATTCTTTTTCTTGGGG

Function

NR:

description
ADP-ribosylation factor-binding protein GGA1-like isoform X1

GO: NA

KEGG:

id description
K12404 GGA; ADP-ribosylation factor-binding protein GGA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556814.2 False 3715 mRNA 0.49 17 13689763 13698207
XM_021556812.2 True 3749 mRNA 0.50 17 13689763 13698310

Neighbor

gene id symbol gene type direction distance location
LOC110485694 LOC106564562 coding downstream 8124 13674650 ~ 13681639 (-)
LOC110485695 LOC106564561 coding downstream 17679 13665802 ~ 13672084 (-)
LOC110485696 LOC106564559 coding downstream 24468 13657453 ~ 13665295 (-)
LOC100136256 LOC100136256 coding downstream 68185 13619768 ~ 13652557 (-)
LOC110485698 LOC106564568 coding downstream 75680 13600728 ~ 13614083 (-)
c13h22orf23 cssa12h22orf23 coding upstream 24511 13722821 ~ 13726634 (-)
LOC110485690 sox10 coding upstream 30202 13728512 ~ 13733700 (-)
LOC110485689 LOC106564549 coding upstream 54786 13753096 ~ 13762248 (-)
smdt1b NA coding upstream 83265 13781575 ~ 13783130 (-)
LOC110485704 NA coding upstream 100443 13798679 ~ 13812239 (-)
G1145292 NA non-coding downstream 28545 13660558 ~ 13661218 (-)
G1145234 NA non-coding downstream 133473 13556069 ~ 13556290 (-)
G1145209 NA non-coding downstream 172031 13517440 ~ 13517732 (-)
G1145203 NA non-coding downstream 189103 13499483 ~ 13500660 (-)
G1145301 NA non-coding upstream 8917 13707227 ~ 13707457 (-)
G1145303 NA non-coding upstream 12313 13710623 ~ 13710888 (-)
G1145305 NA non-coding upstream 12895 13711205 ~ 13711453 (-)
G1145306 NA non-coding upstream 13432 13711742 ~ 13711976 (-)
G1145307 NA non-coding upstream 13935 13712245 ~ 13713276 (-)
G1145110 LOC106589620 other downstream 328955 13357074 ~ 13360808 (-)
G1145046 LOC106589870 other downstream 395620 13292935 ~ 13294143 (-)
LOC110485655 rab3d other downstream 518606 13163816 ~ 13178960 (-)
G1145035 NA other downstream 563165 13124870 ~ 13126598 (-)
G1145789 LOC106588930 other upstream 388642 14086952 ~ 14087567 (-)
G1145790 NA other upstream 391348 14089658 ~ 14090787 (-)
G1145830 LOC103354157 other upstream 478937 14177247 ~ 14180330 (-)
G1146251 NA other upstream 1012272 14710582 ~ 14711954 (-)

Expression


Co-expression Network