c13h22orf23 (cssa12h22orf23)


Basic Information

Item Value
gene id c13h22orf23
gene name cssa12h22orf23
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13722821 ~ 13726634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556811.2
GTGGCTTTAAGACCTATGGTTTCTATGGCAGCCGCCAGTTATGTCCGGAAGAAACACTGCCATCATTATCCCATGGTGCAGCGTCAAGAAAGTTGAGAAAAATAGAAATCCATGATGGAGACATCTTCTCGTGATCAAGCTGGTGGAGGTCTGTGGAACTGTCCTAGAAGGACCCAGTACAGCAAGGAGATTCAGGACATGCTCAAATTAATGATGCAAGAGTCGAGACTCACCAACTTCCAGCAAAGGCAGCTCAATGACAAACTTAAGAAGGGATCAGCGTTGCCATTGACCTGCAACCCCACATCATCGGCTCCTCCCTCACTGCCCAAACCCAAAGTCTTAAAAAATAGCACAAACCGAACTCCAGCCAAGCCCCTGAGGCGCACCGCTGACAATTGTAGTTCTGGGGACAACTACACCAGAGATAGGTTCCGCCCCAGTGCCACACGAGATttagagaaggagaagaggaggctcCAGAACATTCTAGCTACGGGGCAGGAGGAACCCAGACCCAGTCGTCCCAGGAACATTTCCCTGGACCAGGgcccagaggaggagagggaccgCTTCCAGGAGGTTTTGGATGAGATTGAGGAGAGGAAAGAGTTTCTGGAGGAGATGACAGCCCTAGGGAAAGGGAAGCAGTATCGAAACATCATCAACACAGAGATCTCACAGAAAATCCGCGAGCTGGAGGTGATTGACAAGGCCCGCAGTGCAGAGCTGAGGACCATTATGCCAGAGAAGAAGACTGAGTGACAGAGAGGAATACTCATCTACTGACTTTGCTGAATGGATCTACTATACTGCTAATACTCTCCTACAGAAAATACACTGCACAGGAATTCTGAACTCAAACTTGGATACTAGTCTTCATTTGTGCATAAATGCTTGTTCAAATTATGGCATGGTAACAAATGTTGCTGGGAAGACCCCGATGCATCCTTGTCAAACTGTGAAAAAGCATTGTAGTGTACATTAAAATATGACCACATCTTTTTAGCGGCATTAATATGTTTTATTTCTCAGTCTCCCAGATTTCAATGCGATCCTGTTGTTTCTTTAGGAGCATGTTTCAACATAGCTCTACAGAAGCCCTTGGTGTGAGTTTTTAAATTGGAAGaagaggcacaaacacacacagacaagcagcCATTTTGAATGGAAGACAAGATCGTGTACTAGACAATATATAACAAGACATTCAGTTTAACTCCGGACAAAAACGAGACTTATTGACGAATACATTTAAATAAGGGCACTCTTAACATAAACGGATCTCATAGTACTATTGACTTTGACGGCAGATTCTAAGTTAAGGCAAAACTCAATGGAATTAGACAGCGTTTACAAACAAAGGCATTGTAAAATATATAAATTAAAAAGATTTGCATATTTTGCAGACTTTCCCAAAACAGTTAAACTGATATCAACTGGTAGGTACTAATAGTTTGCTACATTGTTAAAAAGATATCTACGGAATttatatacacagagtgtacaaaacattaggaacacatgctctttccGTGACCTAGACTGACCAGGCGAAAGCTAAGATCCCCTATTGATGACACTTGTTagatccacttcaaatcagtgtaaatgaaggggaggagacgggttaaatacggatttttaagcattgaaacaactgagacatggattgtgtctgtgtgccattcagagagggAACGGACAAGAAAATATTTAAGTGGCGGTTTGTGTTAACAGCAACGCTGCTGGGCTttttacgctcaacagtttcccgtgtttatcaagaacggtccaccacccaaaggacatccaaccaacttaacacaactgtgggaagcattggagtcaacatgggccagcatccctgtggaaagctttcgacaccttgtagagtccatgccccaacgaattgaggctgttctgagggcaaaagggggtgcaactcaatattagaaaggtgttcttaAAATTTTGTACACTCACTGCCTGCATATATCCTTATTGTATAATGTAGCCCCCAGAACTGTTCACACTTGTTTCGGTTGTAAATCTGGTCAGATTCTGTAATACTATTAAGTCAGTGACCTGTCATGATACAACTATGTTAGTCAAATACACTGCTTTACATTCCTTGTTTCAAGTCATTACTTACATTCCATCTTAACTATTTCTTACCTGTCTGTCTTATGTCTCATTCTCAGACCCGTGATTATCCAACATAATATCTACAGTACAATAGTCAGTGATTTGGAAAACATGGTAAGTAGCTAGTTAAGAAATAACCTTTCCGCTAAAAGCTAGAGTAATTATTTGGGTTGTCATTACTCCATCTTAACTGGCAGTATTTACTCACAACAACGGGTTCCTCTTTTAAAAAAGATTCACAATAGTTCAGAAGTACCACAGACTCAAACCAGACAACCGACTGACACACACAACTCTTCGTTCTGTTTCCAATCTACAGACAATGAGACATATGCAGCGTCCATGAACAAAGGGGAAACCTTAGGACCACTGAATAAGCAGGAGATGAGAGAGTGTTCTTCCTTAGTTTCTACCATGATAAGAGACTGATGAATGGTAAGAAACCTGCAGTCATAGTATTTATATCTTTGTTAAAAGCCCATTT

Function

NR:

description
UPF0193 protein EVG1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556811.2 True 2632 mRNA 0.42 7 13722821 13726634

Neighbor

gene id symbol gene type direction distance location
LOC110485693 LOC106589449 coding downstream 24511 13689763 ~ 13698310 (-)
LOC110485694 LOC106564562 coding downstream 41182 13674650 ~ 13681639 (-)
LOC110485695 LOC106564561 coding downstream 50737 13665802 ~ 13672084 (-)
LOC110485696 LOC106564559 coding downstream 57526 13657453 ~ 13665295 (-)
LOC100136256 LOC100136256 coding downstream 101243 13619768 ~ 13652557 (-)
LOC110485690 sox10 coding upstream 1878 13728512 ~ 13733700 (-)
LOC110485689 LOC106564549 coding upstream 26462 13753096 ~ 13762248 (-)
smdt1b NA coding upstream 54941 13781575 ~ 13783130 (-)
LOC110485704 NA coding upstream 72119 13798679 ~ 13812239 (-)
LOC110485709 NA coding upstream 168954 13895588 ~ 13896731 (-)
G1145310 NA non-coding downstream 3435 13717309 ~ 13719386 (-)
G1145309 NA non-coding downstream 6837 13715675 ~ 13715984 (-)
G1145308 micall1 non-coding downstream 7880 13713723 ~ 13714941 (-)
G1145307 NA non-coding downstream 9545 13712245 ~ 13713276 (-)
G1145306 NA non-coding downstream 10845 13711742 ~ 13711976 (-)
G1145324 NA non-coding upstream 15897 13742531 ~ 13742775 (-)
G1145332 NA non-coding upstream 91582 13818216 ~ 13819806 (-)
G1145110 LOC106589620 other downstream 362013 13357074 ~ 13360808 (-)
G1145046 LOC106589870 other downstream 428678 13292935 ~ 13294143 (-)
LOC110485655 rab3d other downstream 551664 13163816 ~ 13178960 (-)
G1145035 NA other downstream 596223 13124870 ~ 13126598 (-)
G1145789 LOC106588930 other upstream 360318 14086952 ~ 14087567 (-)
G1145790 NA other upstream 363024 14089658 ~ 14090787 (-)
G1145830 LOC103354157 other upstream 450613 14177247 ~ 14180330 (-)
G1146251 NA other upstream 983948 14710582 ~ 14711954 (-)

Expression


Co-expression Network