LOC110538731 (LOC106592182)


Basic Information

Item Value
gene id LOC110538731
gene name LOC106592182
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53246394 ~ 53250376 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941478.1
AGGCGCATGACAGCCGACTGGGACGAAGTTGTAAAACTCCCAGGTAGAAGGGAAACATTCTGCAAGCCTGCTGAAAGGGGAAAACGCCAAACAACCTAAAAATCTAAACTAAAGCAAAATAAATAACGATAACCTATCGACGTCTACACGTACTGGAATACTTTTTtatgttaatattatattatatgtgaagAAAGTATTTATATCTACCCTACACTTCTATTTGCACTAACGGTACTTCAAAACTACTGAGAATCTTTTATTTTGTACGAAAAAGAAAAAACAACGCTCAACCTTGTGGAAGAATGCCTCTTGCGACTAGTTTTTAGAGCAGTTCCACAAAGCTCTAGTTCCTTTTGCCTGGTGTTGACCCAACCCATCACACCCTACCCTGCCTGGAAGCACCTACGCCACCCACCACAGATACGTAAAGCAACTCAACAGGACGCAGCTGCCGACACCTCTTCTCGCGCCCGGAACAGTTCAGCAGCCAGCTATGCAGCTTGAAATCCAAGTAGCCCTCAACTTCGTCATCTCCTACCTTTACAACAAGCTGCCGCGGCGACGGGTCAACATCTTTGGCGAGGAGCTTGAGAGGCAGCTCAAGGGGAAGTATGAGGGCCACTGGTACCCAGACAAGCCATACAAGGGCTCTGGATTCAGGTGCATCCACGTAGGGGAGAAGGTGGACCCGGTGGTAGAGAAGGCAGCCAAAGAGAGTGGCCTGGACATTGAGGATGTGCGCCACAATCTGCCTCAGGACCTCAGTGTGTGGATCGACCCCTTCGAGGTATCCTACCAGATCGGGGAGAAGGGGCCCGTCAAGGTGCTGTACGTGGACGACAGCAATGAGAGCAGCCCCAGTGGTCTGGAGCTGGACAAGGAGATCAAGAACAGTTTCAACCCTGAGGCCCAGGTCTTCATGCCCATCAGCGAGCCTGTGGTGGGCCCCTCTCCGACTTCCAGCTCGCCCTCGCCTCCCTTTGGCCACTCGGCTGCTGTCAGCCCCACCTTCATGCCACGCTCCAACCAGCCTTTAACCTTCACCACCGCCACCTTCGCCGCCACCAAATTCGGCTCCACCAAAATGAAGAGCAGCAGCCGCAACAACCAGAACGGCAACGGTGGCCAAGGCGGGCAGGGCCAGAAGGTGGCCCGCACCTCACCCACCAACCTGGGCCTGAATGTGAACACGCTGCTGAAGCAGAAAGCCATCTCCACCTCCATGCACTCTCTGTACGGGTTGGGCCTGGGCCAGCAGCAggcctcagccctcagccccaaCGCCAAGGAGTTTGTGTTCCCCAACCTCCAGGGCCAGGGGAGCCCGAGTGCCCTATTCCCTGGTGACAGCTCCCTCAGCCTCAGCCCGCTGCAGTACAGCAATGCCTTCGACATGTTTGCGGCCTACGGAGGTCTCAACGACAAGTCCCTTATGGACGGCTTGAATTTCAGTTTGAACAACATGCAGTATTCGAACCAGCAATTCCAGCCAGTGATGGCCAATTAGTACACAGATACTAAGGTACTAGTACACAGAAATGACCAGAGATATGTGATATGGGGAAAAAAAAGACTAAACGCACATCAAAATAAAATAGGAAACACAATTTCCAGGAAAAATTGAAAGTGACTTGTTGTCGACTGTAAGATCTGTGTTCAAGTCCAAGCGCATGAGCCTGAGGGTGAAATGACTTTGTCCCCTTGAGTTATCTTTTTTTACGATGAAGCTTGTAGTACAAGATGTCCAAGCTTGGTTACCTAAACTTCGACATGCATCATTATTTCTTTTGCCAACCAAGCACAGAAATTATTTTTTACGGGACTGTTTTAAAGATAAAGAAGAAAAACAATACAAGTCATGGCCTCTTTCAGTATTTAAGACATAACTGGACATGCCAATTTTCCAAGGATTGGCATTAATAAGTGGGATTTCCTGGTCTTTTTTCTAATTGTATAATTTAATTTAGTACAGAGTTTGTAAAATATCAGAGTATATATTGTTTCTACGACATGGTACTGCATTTATATCTTTTTACTACTACAGTGATCCGTGATGGCTGCAGCGACTTTAGGTTCTTTTTTTAATGAAATTGTGAAATGAATCCCTCTAAAAAACATTGACTATTCTAAAGATTGTGTACAGAATATTCCATAGTGGTGGGATTTAAGAATATTTGCTTTTTTGAAAAACAAGAGTTGTATTTTCTGTTAAGAGTTTAAAGATTTTTGCTATATTATGGACAAAATGTAATCGTATATTAATTTTGTACCTACATTGTGCAATACTTGATAAAACAAACGGTATAACAAAGTATTTGGAGTCAGTGTCTTACATGTTAAGCTGAACTGATCATTTATTAAGTTTGTATTAAAAAGCTTGAAAATA

Function

NR:

description
protein Tob1-like

GO: NA

KEGG:

id description
K14443 TOB; protein Tob/BTG

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941478.1 True 2389 mRNA 0.46 2 53246394 53250376

Neighbor

gene id symbol gene type direction distance location
LOC110485222 LOC106601739 coding downstream 138475 53093666 ~ 53107919 (-)
LOC110486776 LOC106606809 coding downstream 504839 52730378 ~ 52741555 (-)
LOC110486769 gtf2f1 coding downstream 816360 52415319 ~ 52430034 (-)
LOC110485216 NA coding downstream 914818 52155640 ~ 52331576 (-)
LOC110538721 NA coding downstream 1056691 52186557 ~ 52189703 (-)
LOC110539023 LOC106601728 coding upstream 107984 53358360 ~ 53417730 (-)
LOC118938325 LOC106606746 coding upstream 179656 53430032 ~ 53440075 (-)
LOC110538745 LOC106606750 coding upstream 200178 53450554 ~ 53456191 (-)
mfsd13al tm180 coding upstream 208135 53458511 ~ 53464014 (-)
LOC118938683 NA coding upstream 232878 53483254 ~ 53483362 (-)
G1187718 NA non-coding downstream 7699 53238454 ~ 53238695 (-)
G1187717 NA non-coding downstream 7999 53238046 ~ 53238395 (-)
G1187711 NA non-coding downstream 19544 53226634 ~ 53226850 (-)
G1187704 NA non-coding downstream 34754 53211440 ~ 53211640 (-)
G1187023 NA non-coding downstream 123585 53119931 ~ 53122809 (-)
G1187734 NA non-coding upstream 33044 53283420 ~ 53284114 (-)
G1187735 NA non-coding upstream 35327 53285703 ~ 53285930 (-)
G1187736 NA non-coding upstream 36052 53286428 ~ 53286846 (-)
G1187750 NA non-coding upstream 57888 53308264 ~ 53355450 (-)
G1187808 NA non-coding upstream 192500 53442876 ~ 53443299 (-)
G1186670 LOC100194703 other downstream 586585 52659331 ~ 52659809 (-)
G1186381 NA other downstream 1215734 51924963 ~ 52030660 (-)
G1186216 NA other downstream 1235183 52010690 ~ 52011211 (-)
G1186154 NA other downstream 1756153 51489777 ~ 51490241 (-)
G1186075 NA other downstream 1872440 51352309 ~ 51373954 (-)
mosmoa C20H16orf52 other upstream 356648 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 556268 53806640 ~ 54049592 (-)
G1188147 NA other upstream 1198507 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 1215157 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 1349025 54599401 ~ 54600449 (-)

Expression


Co-expression Network