G1140367 (LOC106601621)


Basic Information

Item Value
gene id G1140367
gene name LOC106601621
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7409260 ~ 7695746 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1300142
CAGTTGTGACTGCAGCTGTAGGAATCACAGTGGTTCTGGTTCTCATCCTCTGTCACTCTGGCTTCAGGTGCGTTTTGAGGACGAGGATGTCCACTACGCTGCTGTGAAATTCAACCTCCCCAGTGCTGCCACCCAACCCGCAGCAGCACAAGCAGCTGAGGACTCCTCTGTTCTCTACAGTACAGTCAATAAACCCTGAACCAAGAAGACCcgaacacaacaaacccagaaccaagaagacctgaacacaacaaacccagaaccaagaagacctgaacacaacaaacccagaaacaAGAAGAcatgaacacaacaaacccagaaccaagaagacctgaacacaaaGGCCCAGAACCACAAACCCAGAACCAGGAAGatctgaacacaacaaacccagaaacaAGAAGACCTGAACAGAACAAGTTTGACAAAAACCttgtataaatataaatataaataaaaccttgtatcaggggtttgtggtatgtggccaatataccacggctaagggctgtatccaagtACTCAgtgttgcgttgtgcataagaacagcccttagccatggtatattggccatataccacacctcctcaggccttattgcttaagtttataatagcaataacaaacttcaggggtttgtggtatatggacaatatactgtaccacggctaagggctgttcttgagTGAATATGCCGTGGCATATTGACCATATACTGCAATCCCCtgaggtaccttattgctattataaactggttaccaacataaattgaacagtaaacaagtatttttgcatcatacccgtggtatattgtctgatatacagtatacacttctgaaatgctgtttcagccaatcagcatctaggacccaaaccacccagtttataatagtatGTAATAATATTTTCCATccagcagacacttttatccaaattCACTCAGTCATTACAGTCATGTTCAAATACATGTATGGTATGTGTACTCCCAGCAGTGTCACGCTCGTTAAAATGGACGGACCAAGGAACAGCGTGAGTtgggttccacatatttatttgcAGTGAAACTTAAACCAAAAACAAGAAACATACAACGACTGTGAACTACGTGGTGCTGAATGCActcacacaaaacaatatcccacaaagcaggtggAAACAGGGAacccttaagtatgatccccaattagagacaacgaacatcagctgcctctaatttgGAACCATACTAAGAGCACCAACATATACATTAAAAGACTAGAACACCAcctagtcacgccctgacctacaacaccatagagaaccaagggctctctatggtgaGGGCGTGACAAGCAGGAATTGACCCATGCACCATGCTGTACAAACTGGCCCACACAGAACTACTCTATTCACACTTAGAGTAGGAGTTCGGATCTAgggtcagttttgccttttaaacTATGATGAATAAGTAGG
>TU1300138
atgatgatgactactgtatatattaggaaattattttttgcatCATGTCAGTTTAAGTagacagacgtagacagacatgcaacacatcacacacattacatacatacatagtgcagtagacttacagacagacagtattcaCATAGACAACCATTtagcacaatacaacacaacacaatatgagCCTGGTTCATTTTCAGTAATGAGACCCTGTACCCCATTTACAGTTTATACTTCAATGTATCAGGTGGAGTTATTCACCAGCTATAGAgtgagttgttgtttatgtttctaAGACTGCAGGGTGGGAGATGCAACAATGGCCTTGAGAACAGTAGGAAGTGTGTTGgtggtctttctctggtctgtgaCAGTGGTACTGGGTCAGGATGGCTGGAGTGTTACATACACCACTCAGAGTATCTGTACCTTGAAGGGGTCATCAGTGGATCTGTTCTGCTCTTACACATATCCCAGTGGTAAAGTCACAACAACCTTCTGGTTCACTAAAATGGAGGCTGGTATAGAACCTGAAGATCTAGGTCAGAACCCAGAGTATGCAGGTCGTCTGGAGTATCATGGGGTTAAGAAGAAAGACTGCACCCTGACAAtcacagacctgagagagagagactcagctaCGTACAAGTTCAGATTATTAACAGATCAAGAAGGAGGGAAATATTCTGgaagtcctggagtcactctgtctgtaacagACctgcaggtgaaggtgactcCTACATGGTGGGCAACGTCGAagacactgacctgtagcaccacctgtactctgactgaccaccccacctacatctggtacaagaacggacaacATCGAGATGAGAGTACCTCGCCCCAGTACAAATACTCAGTCTCCAATGACTATGATGCCAGTTATTCCTGTGCTGTAAAAGGCCATGAGGATCTCcactctcctgcagtgtGTGTTCAGGGTCAGAGCTGCAACAGAGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGGTCAACAGTGGACATATCCTGTACTTATGTTAGTTATTATTCCATCACATCAACATTCTGGTTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1300142 False 1458 lncRNA 0.43 6 7409260 7680521
TU1300138 True 1072 TUCP 0.44 6 7467846 7695746

Neighbor

gene id symbol gene type direction distance location
LOC110519431 LOC106596103 coding downstream 5502 7316314 ~ 7403758 (-)
LOC118938181 NA coding downstream 67580 7341076 ~ 7341680 (-)
LOC110485501 LOC106596103 coding downstream 118427 7284716 ~ 7290833 (-)
LOC110513509 LOC106593154 coding downstream 408906 6923538 ~ 7083659 (-)
LOC118938173 NA coding downstream 535147 6872545 ~ 6874113 (-)
LOC118938176 LOC106592614 coding upstream 2445 7682966 ~ 7689906 (-)
LOC110493317 LOC106591490 coding upstream 33852 7714373 ~ 7733873 (-)
LOC118938522 LOC106591490 coding upstream 53524 7734045 ~ 7736476 (-)
LOC118938183 LOC106591333 coding upstream 245412 7925933 ~ 8006473 (-)
LOC110485610 hoga1 coding upstream 378420 8058941 ~ 8080347 (-)
G1140372 NA non-coding downstream 40374 7322699 ~ 7368886 (-)
G1140387 NA non-coding downstream 56462 7340910 ~ 7352798 (-)
G1140408 NA non-coding downstream 82415 7324780 ~ 7326845 (-)
G1140404 NA non-coding downstream 93692 7311738 ~ 7315568 (-)
G1140378 NA non-coding downstream 126794 7281966 ~ 7282466 (-)
G1140504 NA non-coding upstream 16026 7696547 ~ 7710867 (-)
G1140526 NA non-coding upstream 70273 7750794 ~ 7751003 (-)
G1140531 NA non-coding upstream 76416 7756937 ~ 7761076 (-)
G1140558 NA non-coding upstream 148602 7829123 ~ 7829555 (-)
G1140559 NA non-coding upstream 152850 7833371 ~ 7833723 (-)
G1140343 NA other downstream 162610 7245712 ~ 7246650 (-)
G1140323 NA other downstream 217017 7190696 ~ 7192243 (-)
G1141490 NA other upstream 650614 8331135 ~ 8332518 (-)
G1141517 NA other upstream 746092 8426613 ~ 8452319 (-)
G1141579 NA other upstream 910444 8590965 ~ 8592898 (-)
ncf4 p40phox other upstream 979038 8655106 ~ 8696718 (-)
LOC118938180 NA coding downstream 31744 7434486 ~ 7436102 (-)
LOC118938520 LOC106596103 coding downstream 44819 7413426 ~ 7423027 (-)
LOC110518530 LOC106591329 coding upstream 402763 8098509 ~ 8119143 (-)
G1140448 NA non-coding downstream 6743 7458227 ~ 7461103 (-)
G1140370 LOC106591489 non-coding downstream 16177 7415596 ~ 7451669 (-)
G1140410 NA non-coding downstream 35619 7327649 ~ 7432227 (-)
G1140386 NA non-coding downstream 36043 7429962 ~ 7431803 (-)
G1140269 NA other downstream 425326 7038877 ~ 7042520 (-)
G1140270 NA other downstream 426156 7040627 ~ 7041690 (-)

Expression


Co-expression Network