G1144390


Basic Information

Item Value
gene id G1144390
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 12684235 ~ 12684856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1305214
CTTTACACACCACAACTGAGGTCATAAAACACTGCACAACGGGGACAATTTAGTCTATAAAATGTAAGATCCTCAATCAGCTGTGAATGAAAACATAACCATATAACAGAACAAACATCAACTTCACCTGAACCATAGATATATGTCTATATATGGATCTGAACGTTACACTGTTGTTCAGAACCAGCAGTGTCATTCACACAACCAAGATAATGATTCAATGGATAATGAATCAAGACAATGAACATTGGTTGGTTGGTTATGATGATGGGACAATATTAACAGCTGTGTAACCATTCACAGTAGACACGAGAGCTTAGGAAAATTAAACATCCAATCAAGATAtttatacatgtgtatatatatatataaataaataaaacaaatctgtAATATGTACAACATATTTTTCATGTTTTAAAATGTACAAAATTAACAGGGTGATACCACAGCGAACTGAGGATGTAGTATTTACAGAA
>TU1305212
ATACAATGGTCACTTTGAGATTGGATTCTCTGAACAGGAAAATTAAGACTCAACAAGAAGAGCAATTTGCATGTAACAGGCAATCTGCGGTTGGTGCTCTGTCCTGTGGACTCGTACATCTTAGGGTCATACACAACATTGTGCTTTACACACCACAACTGAGGTCATAAAACACTGCACAACGGGGACAATTTAGTCTATAAAATGTAAGATCCTCAATCAGCTGTGAATGAAAACATAACCATATAACAGAACAAACATCAACTTCACCTGAACCATAGATATATGTCTATATATGGATCTGAACGTTACACTGTTGTTCAGAACCAGCAGTGTCATTCACACAACCAAGATAATGATTCAATGGATAATGAATCAAGACAATGAACATTGGTTGGTTGGTTATGATGATGGGACAATATTAACAGCTGTGTAACCATTCACAGTAGACACGAGAGCTTAGGAAAATTAAACATCCAATCAAGATAtttatacatgtgtatatat
>TU1305213
CTTTACACACCACAACTGAGGTCATAAAACACTGCACAACGGGGACAATTTAGTCTATAAAATGTAAGATCCTCAATCAGCTGTGAATGAAAACATAACCATATAACAGAACAAACATCAACTTCACCTGAACCATAGATATATGTCTATATATGGATCTGAACGTTACACTGTTGTTCAGAACCAGCAGTGTCATTCACACAACCAAGATAATGATTCAATGGATAATGAATCAAGACAATGAACATTGGTTGGTTGGTTATGATGATGGGACAATATTAACAGCTGTGTAACCATTCACAGTAGACACGAGAGCTTAGGAAAATTAAACATCCAATCAAGATAtttatacatgtgtatatat
>TU1305215
GGACTCGTACATCTTAGGGTCATACACAACATTGTGCTTTACACACCACAACTGAGGTCATAAAACACTGCACAACGGGGACAATTTAGTCTATAAAATGTAAGATCCTCAATCAGCTGTGAATGAAAACATAACCATATAACAGAACAAACATCAACTTCACCTGAACCATAGATATATGTCTATATATGGATCTGAACGTTACACTGTTGTTCAGAACCAGCAGTGTCATTCACACAACCAAGATAATGATTCAATGGATAATGAATCAAGACAATGAACATTGGTTGGTTGGTTATGATGATGGGACAATATTAACAGCTGTGTAACCATTCACAGTAGACACGAGAGCTTAGGAAAATTAAACATCCAATCAAGATAtttatacatgtgtatatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1305214 False 479 lncRNA 0.33 1 12684235 12684713
TU1305212 False 507 lncRNA 0.37 1 12684350 12684856
TU1305213 False 364 lncRNA 0.35 1 12684350 12684713
TU1305215 True 400 lncRNA 0.36 1 12684350 12684749

Neighbor

gene id symbol gene type direction distance location
LOC110487266 NA coding downstream 235672 12416017 ~ 12448563 (-)
LOC110485629 NA coding downstream 323905 12358008 ~ 12366285 (-)
LOC110485617 LOC106590349 coding downstream 745809 11906902 ~ 11938426 (-)
LOC110487235 xpnpep1 coding downstream 778452 11892173 ~ 11905783 (-)
LOC110485534 LOC106564462 coding downstream 808413 11873981 ~ 11875822 (-)
LOC110485637 LOC106590256 coding upstream 26828 12711684 ~ 12720418 (-)
LOC118938209 LOC106564503 coding upstream 37686 12722542 ~ 12744218 (-)
LOC110493438 LOC106564504 coding upstream 69330 12754186 ~ 12759727 (-)
LOC110485521 LOC106589832 coding upstream 187029 12871885 ~ 12878585 (-)
LOC110485520 LOC106590222 coding upstream 196092 12880948 ~ 12883307 (-)
G1144389 NA non-coding downstream 10 12684015 ~ 12684225 (-)
G1144387 NA non-coding downstream 1806 12681989 ~ 12682429 (-)
G1144358 NA non-coding downstream 40375 12643059 ~ 12643860 (-)
G1144349 NA non-coding downstream 50788 12633093 ~ 12633447 (-)
G1144345 NA non-coding downstream 57366 12626668 ~ 12626869 (-)
G1144392 NA non-coding upstream 2843 12687699 ~ 12687990 (-)
G1144394 NA non-coding upstream 5323 12690179 ~ 12690387 (-)
G1144401 NA non-coding upstream 13394 12698250 ~ 12699363 (-)
G1144412 NA non-coding upstream 25022 12709878 ~ 12710620 (-)
G1144338 NA other downstream 66077 12617959 ~ 12618158 (-)
G1144335 LOC106564512 other downstream 68676 12614976 ~ 12615559 (-)
G1143771 NA other downstream 602353 12043108 ~ 12081882 (-)
G1143743 NA other downstream 731667 11951595 ~ 11952568 (-)
G1145035 NA other upstream 440014 13124870 ~ 13126598 (-)
LOC110485655 rab3d other upstream 480658 13163816 ~ 13178960 (-)
G1145046 LOC106589870 other upstream 608079 13292935 ~ 13294143 (-)
G1145110 LOC106589620 other upstream 672218 13357074 ~ 13360808 (-)
LOC110485696 LOC106564559 other upstream 978324 13657453 ~ 13665295 (-)

Expression


Co-expression Network