G1145043


Basic Information

Item Value
gene id G1145043
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 13206651 ~ 13209542 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1306042
gtcttcactattattctacaatgtagaaaatagtaaaaataaagaaaaacccttgaatgagtaggtgtgtccaaacttttgactggtactgtaagtccTCAGTGACTGAACGATGGAATCAAAGGAGCTGTTTGTAAAACTCAGGAAAAATAACCAGGACAAAGGAATAAGAACAGTTAAGAAGatattttaaatatttgtatgtgATGAAAGAAGATGCACTTTTGCAAATGATGGTGATGGCGCAGTTTAACTACCAGAGGCTTATATGCTTATATATGATTAAGTATATGTTGTGTATTTTGTGTTTTGGGGGATATTTAGTTTAGTTAAATACTAGTCTCTCCTCTGCTGTAGCTTCACACTATAGTAATGTGATGTTGTTTTCCCTCATCTGACAAGGAGTAACATTCAACTGGATATACTGTAACAACATGTGATTACATGACTGTTATTATACAGGTGGATACAAATGTTACAAAACATACATTAATAGCTCAAACAACCCTCAAGACGTCACGATGCAACAGCCCAGTTACTAACACCCAATAACTTTCCTACATTCTGGAATATACATTTgatatatttatttaaatataCATTCATAATCACTACTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTACTGAAGTGGACTGGCTACCTGTCGCTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTACTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTATTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCGTTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTATTGAAGTGGACTGGCTACCTGTCATTCATTATCACTATTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCAATATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTATTGAAGTGGACTGGCTACCTGTCATTCATTATCAATATTGAAGTGGACTGGCTACCTGTCGTTCATTATCACTATTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTATTGAAGTGGACTGGCTACCTGTCATTCATTATCACTATTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCGTTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTTCTGTGGTTTGTTTACCTATTGATGTATTTCTAGCGTTTTTATATTTATGAAGTGAAATGTTGCTGCGAGGTCAGTGTGGTTCTCGCTTTCACTTAGCATGGCAGTTTTGCTGCTATCCATTTACACAGACCAtgccctcttcctcctgctcctcttcctccccattgtCATCACTTTCCCCTTTCATACTTCTCCTTCTCCTTAATATAGCTTGAAATGCAACTATCGATCTGTTGTAACAAAAGTGAAATGGAACCATGTTCACTTGGGAGTCCAGGCTTCTCTTCAACCCCGTCTTTGTCAGGTCAACATCTGTACTGTGCCTCCTCTCATCCCTATTCACCACTCTATCTAGATCCCTcgttcattctctctttcaccTTTACCCCATTCTGTCTCCAGTCAAGTTACAACACTGGAACAAGAGTGTATCGTGTCTTAAAGGTATATAGGTTTCTCGTTGTGTTTGattatgttatactgtatgttatatCAGTCATCCTAACCAGAGCATCAAACATCCTGAAACTGTCTGTTAAGAGCAAGAGTAGCAAACATCTAACTTTAGCTGGATTGTagcataaagagagagagatgaagtgacATTCTATAACAGACGCATTGTTAACGCACAGGCTGTACAGTCAGTGATCAACAATTAACTCAACTTGGGTGACtgactgaagtgtgtgtgtgtgtgtgtgagagagagagagaaaaacacaacaTCCTAACTGTTAATGTGGTGATCCaaacttttttttggggggggggg
>TU1306043
gtcttcactattattctacaatgtagaaaatagtaaaaataaagaaaaacccttgaatgagtaggtgtgtccaaacttttgactggtactgtaagtccTCAGTGACTGAACGATGGAATCAAAGGAGCTGTTTGTAAAACTCAGGAAAAATAACCAGGACAAAGGAATAAGAACAGTTAAGAAGatattttaaatatttgtatgtgATGAAAGAAGATGCACTTTTGCAAATGATGGTGATGGCGCAGTTTAACTACCAGAGGCTTATATGCTTATATATGATTAAGTATATGTTGTGTATTTTGTGTTTTGGGGGATATTTAGTTTAGTTAAATACTAGTCTCTCCTCTGCTGTAGCTTCACACTATAGTAATGTGATGTTGTTTTCCCTCATCTGACAAGGAGTAACATTCAACTGGATATACTGTAACAACATGTGATTACATGACTGTTATTATACAGGTGGATACAAATGTTACAAAACATACATTAATAGCTCAAACAACCCTCAAGACGTCACGATGCAACAGCCCAGTTACTAACACCCAATAACTTTCCTACATTCTGGAATATACATTTgatatatttatttaaatataCATTCATAATCACTACTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTACTGAAGTGGACTGGCTACCTGTCGCTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTACTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTATTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCGTTCATTATCACTGTTGAAGTGGACTGGCTACCTGTCATTCATTATCACTGTTGAAGTGGACTTCTGTGGTTTGTTTACCTATTGATGTATTTCTAGCGTTTTTATATTTATGAAGTGAAATGTTGCTGCGAGGTCAGTGTGGTTCTCGCTTTCACTTAGCATGGCAGTTTTGCTGCTATCCATTTACACAGACCAtgccctcttcctcctgctcctcttcctccccattgtCATCACTTTCCCCTTTCATACTTCTCCTTCTCCTTAATATAGCTTGAAATGCAACTATCGATCTGTTGTAACAAAAGTGAAATGGAACCATGTTCACTTGGGAGTCCAGGCTTCTCTTCAACCCCGTCTTTGTCAGGTCAACATCTGTACTGTGCCTCCTCTCATCCCTATTCACCACTCTATCTAGATCCCTcgttcattctctctttcaccTTTACCCCATTCTGTCTCCAGTCAAGTTACAACACTGGAACAAGAGTGTATCGTGTCTTAAAGGTATATAGGTTTCTCGTTGTGTTTGattatgttatactgtatgttatatCAGTCATCCTAACCAGAGCATCAAACATCCTGAAACTGTCTGTTAAGAGCAAGAGTAGCAAACATCTAACTTTAGCTGGATTGTagcataaagagagagagatgaagtgacATTCTATAACAGACGCATTGTTAACGCACAGGCTGTACAGTCAGTGATCAACAATTAACTCAACTTGGGTGACtgactgaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagaaaaacacaacaTCCTAACTGTTAATGTGGTGATCCaaacttttttttggggggggggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1306042 False 2549 lncRNA 0.40 3 13206651 13209542
TU1306043 True 1798 lncRNA 0.39 3 13206651 13209542

Neighbor

gene id symbol gene type direction distance location
LOC110487513 LOC106589682 coding downstream 20667 13179595 ~ 13185984 (-)
LOC110485655 rab3d coding downstream 27691 13163816 ~ 13178960 (-)
LOC110485650 LOC106589714 coding downstream 45483 13154136 ~ 13161168 (-)
LOC110516103 LOC106589920 coding downstream 54805 13144075 ~ 13151846 (-)
LOC110487275 LOC106589720 coding downstream 62714 13141743 ~ 13143937 (-)
LOC118938212 LOC106589906 coding upstream 1328 13210870 ~ 13262316 (-)
LOC110487278 LOC106589852 coding upstream 121973 13331515 ~ 13346367 (-)
LOC110485678 LOC106589534 coding upstream 230156 13439698 ~ 13458698 (-)
LOC110485679 LOC106564573 coding upstream 253447 13462989 ~ 13470981 (-)
LOC110485677 LOC106564572 coding upstream 261682 13471224 ~ 13494372 (-)
G1145063 NA non-coding downstream 9963 13195425 ~ 13196688 (-)
G1145064 NA non-coding downstream 18731 13187343 ~ 13187920 (-)
G1145051 NA non-coding downstream 44343 13161890 ~ 13162308 (-)
G1145035 NA non-coding downstream 81374 13124870 ~ 13126598 (-)
G1145123 NA non-coding upstream 77789 13287331 ~ 13288035 (-)
G1145127 NA non-coding upstream 87241 13296783 ~ 13297090 (-)
G1145128 NA non-coding upstream 87883 13297425 ~ 13297736 (-)
G1145129 NA non-coding upstream 88334 13297876 ~ 13298606 (-)
G1145130 NA non-coding upstream 89084 13298626 ~ 13298911 (-)
G1144338 NA other downstream 588493 12617959 ~ 12618158 (-)
G1144335 LOC106564512 other downstream 591092 12614976 ~ 12615559 (-)
LOC110485629 NA other downstream 840366 12358008 ~ 12366285 (-)
G1145046 LOC106589870 other upstream 83393 13292935 ~ 13294143 (-)
G1145110 LOC106589620 other upstream 147532 13357074 ~ 13360808 (-)
LOC110485696 LOC106564559 other upstream 453638 13657453 ~ 13665295 (-)
LOC110485704 NA other upstream 594024 13798679 ~ 13812239 (-)
G1145789 LOC106588930 other upstream 877410 14086952 ~ 14087567 (-)

Expression


Co-expression Network