Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_030711

Basic Information

Item	Value
gene id	XLOC_030711
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007116.7
NCBI id	CM002889.2
chromosome length	72500376
location	110399 ~ 114963 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061500
GAAACTTTTAATTGGTTCCTCAAGATTGTAATTTTAGAAGTCTTATGTGCATTATAGTGTTTCGCTTCTCCTGCACTCTCCACAGACGCCTGTTCtgagagatgATGATGATGAATAAATATATCATGCTCTTTCTGCTAATCAGATTATTTCTTGATTTCTCTCCTCGAGGAACATTAGGTTAGGTCACCGCACCGAGATCTAAAGCAGAAGTATTAATATTAAAG

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00061500	True	227	lncRNA	0.37	2	110399	114963

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_030712	NA	coding	upstream	134785	249748 ~ 252101 (-)
XLOC_030713	NA	coding	upstream	184182	299145 ~ 307140 (-)
XLOC_030714	NA	coding	upstream	185915	300878 ~ 301152 (-)
XLOC_030715	HOOK3	coding	upstream	200220	315183 ~ 417535 (-)
XLOC_030716	NA	coding	upstream	211721	326684 ~ 337090 (-)
XLOC_030717	NA	non-coding	upstream	283342	398305 ~ 399726 (-)

Expression

Co-expression Network