XLOC_030725


Basic Information

Item Value
gene id XLOC_030725
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 921488 ~ 926077 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061505
tttaatttaatttaatttaatttaatttaatttaatttagatttattttattttattttattttattttattttattttattttattttattttattttattttattaacttggTCCAAACATTGAGAATGCTAAATGAAAACCAGAGAGTCAaaattactaaatatatatatggaAATAAAATTGATGCATCTAAAAATTCAAAAAACGGCATAACACAATAGCCACAGCACACAAGCTGTGGTTTAATAAATGTATGGCATTCCTTTACTCAGAgcgaagcacttcattcacaaaCCTGAAAACTggttaaactaaaaaaatgtaatttaatttaatttattggtGGTAATGTGTCTTATGAAAACTACAGTAGAGATAGAATTAAAAAacagcttatttaaaaaatatattaatgcataattttctttacattttactcAGAAACTGATATTGCATTTGACaagtgattaaataaaaatagaaaagaacACTGAATTAAACCTGACATTCAGAAGTGAAAAGCAAAGTAATCTACCATGCAATCCCAATATTAAGTCAACAAACTTCAgaacatttttaagtttattaaacTTAAATCAAGTCAAGAGCAGTGAatgggttgaaagttgagtcaactcaaaatgtcctgaagtttgttaccttatttttaaattgagtcaactttttttttttactgtgcagttttcttaaaataaaatgaggTGAATTTATGATTTAAAACAGAATCCTCCAGACGGGTCAGAAAAACACATGCAATGTAAAGAGAACTGTTTTCTAAGCCTGTGTTTTATTTCTGAACTCAGTGTTTTAAATGTCTTCATTTTGCTCTAGCAAATGCATCTTGATTTACTGTAATGCTAATATTCAGATATTTGTTCTGGAAAACGAAAGAAACACAGATTTTtgtatcatatttattttataatcgttctgttgattattattttatcattaaatatGACTGTTTTTGATTTCTCCATCAGTTCATGAAGGTATAATAATGTTAAAGCGGACAAACATGAAGACAAAAAATCAGCTTTATTACCTTCAGATGAACacatttgagtttttttaacTCAAGAGCAAAAGAGACATTTTATGTGCCTAAATATATTTctgttcactttatttatttatttcctctgtAAACGCTGCGAGGCAGAAGAAGACGGATGAATGCAAGACAGAAGGAAAGACCAAACGCGTCCCGaaatttgatatttttctgctttccacacacacagacctgcAGTGCTGTTTTTTACTGTACAGTTGCAGCGAGCGAGCGATTGATGGACTGTGGCGTCATGGACTCGGACGGGTTTCTACCgatatatttaatatatgatTTAGAGTGTTCCTTTCAGCGTAATTTATGAAGATTAATTCTAGAGCTTTTATTTAGGCCGTTAGGAAAATAAAGGGATTCTGGGACGGAGTTTCACTGTGGTTTTTGAACATGAAGACTGGACGAtacttttatcttttattttggctTCAGCATCATGAACACTTTGGGTTGTCTAGCGATGTTTGTGTGTCATTATAAATGTGATCGACGACATTCCTGATCAATTTCTGGGGAATCATGAAGTCTGTGTAAATCTGCGGTGTCGGTAAACTCTGCTTCCCTCACAGTCTGTTCATTTCTCACAGAGTCCTGCTGTCCAGGAAAAGTTCTGCTGGAGATTTGATGTTCGAAACTAAAAAATGAAGCTCACGATTAAGTTCATCGCACACGAGTTCCACATTTTTGCATGCATTTATTCGTATTTGTTAAACTAGAAAAATGTGTCACCCTTAAGTTCATTGCACACTGTCCGAAATTTtcgcatacatttttttatatttttgttatctAACAGGAATTTTCACCTTTAAGTTAATCGCACACTTGGGCTAAAATGTTTGCATGCATTTTTTCATattcactattttttttattgtcaattcCAAGTTGATTGCACACTAATATGAAATTTATGTATGCATTTCTcatattcaatattttttaaaaagtaatcactctTAAGATCTTTGCACACTGATTTTGAAATTTTTATGTCTCTTTGTGgttgttaaacaaaaaaactgtcaCTCTTAATATCTTCACTTACTAATGCGAAATTTTCATATgcatttttcagatttgttttactAAACAATTCGTCACTTTTAAgtttattgcacactgaattGTCCAAAATTGTTATATGCGCTTATTAGTattctttcattttaaaatattgtcatCGTTAAGTTCATTGCACACTGGTTAATCTTGTTATTTCAAGATTTAATCTCTTGAAATCTTCGCGCACTGATTCTAAATTTTCACATGCACTTTTTCATATTCGTAACCTTAATATTttccccctttatttatttttcacttcaACGTTTATTGTGCACAGAGCTGAAGTTATTGAATGCACTTTTTCGTATTTGTTATACTAATATTCACTTTTAAGTTCATCGCACACTGAGTTTTAAATTCATATGCATTATTTTTGTATTGGTTATCCTAATGAATTCGCCACTCTTAAGATTTCTGCATACTGCGTCTGAAATATTCATATGCATTTTTCTATATtcgttattttaaaaaagtaatcacaCTCGCAAATCGGCACACACTGCATTCCAAACTTTCATATGTGTTCTTTTGTATTCATTATCCTAAAAAGATCGTTACCTTTACATTTTTTACGCACTGAGCCGAATTTTTCATATGCATGTTTTCGTATTTGCTACACTAAAAATTTGTCACTTAAGTTCATCGCACAGTTTGAAATGTTCATATGTATATGTTCGTATTTGCTATTCTAAAAAAAGGGTCAACTTTCAGTTCTTTCCATAAAGTCAgaaattttgaatgtttttttttccgcaTTTGTTAAATTTATAACATTTCGTCACCATTGTTTATTGTAGTCCAaaatttttgtatgtattttaattatCCTAAAATTATTTGATCTTAAGTAAGAATTTTTATGTGTTtgatcaaattattttatttgttatacctAAAAAATCATCACTCTTAAGTTCATGGCGCACTGTCTGACATTTTCGcaggttaaaaaataaacacaagctACTATTGTGTTTGTATTCCACAATTTGTTTGTCATGAAGTGCTGCGTGAAGAAGTGGATTCATTTGTCACTGCGTTTGTCGAAACACCTCCTATAGATGCGAAAATTAGAGAAATGATGATGCACAAAAGTTTCTGCAGCAGTGTGTCAATGTATTtggcagtatttatttatttttaacatgcaaATTTTGATGGAAATTTGGAACTCTGTGTCGACTGAAATCTCATAACAGCAGCAGTGCATATAATAATTCATCATTCACAATCTCACATGTCTTTATCCAGtctaaattattcaattaaaccttttataattaaaaaaatattattattattattattacctgtATCATATCATTTTAAAAGTGCAAGTAGATGCATTGACGTCACCATTTTATGAAACAAATTGGATGTAACTGGTATAAGTCCAGTTGCCGAACGTGTCTTCTTCAGTGAACTCTTCCTGTGACGGGGCTGAGCAACTCCTTCATTAATTAGCTTCATTAATTAGAGGAGCGTTAGACGAGGACTCatcatccctgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0048468 cell development biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0003779 actin binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061505 True 3681 lncRNA 0.31 2 921488 926077

Neighbor

gene id symbol gene type direction distance location
XLOC_030724 BX537263.4 coding downstream 85198 836137 ~ 836290 (-)
XLOC_030723 BX537263.2 coding downstream 87555 833599 ~ 833933 (-)
XLOC_030722 zgc:158463 coding downstream 94681 824709 ~ 826807 (-)
XLOC_030721 BX537263.1 coding downstream 99202 821952 ~ 822286 (-)
XLOC_030720 CU855580.1 coding downstream 433513 487859 ~ 487975 (-)
XLOC_030726 FP102032.1 coding upstream 71735 997812 ~ 997928 (-)
XLOC_030727 mbd2 coding upstream 72219 998296 ~ 1047504 (-)
XLOC_030728 NA coding upstream 80373 1006450 ~ 1084749 (-)
XLOC_030729 si:zfos-128g4.1 coding upstream 146853 1072930 ~ 1076431 (-)
XLOC_030730 surf4 coding upstream 254626 1180703 ~ 1203455 (-)
XLOC_030719 LO017838.1 non-coding downstream 459253 462121 ~ 462235 (-)
XLOC_030731 CU694263.1 non-coding upstream 255332 1181409 ~ 1181524 (-)
XLOC_030734 NA non-coding upstream 391813 1317890 ~ 1419531 (-)
XLOC_030735 dre-mir-199-2 non-coding upstream 450696 1376773 ~ 1376868 (-)

Expression


Co-expression Network