XLOC_030732 (surf2)


Basic Information

Item Value
gene id XLOC_030732
gene name surf2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 1203767 ~ 1218801 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059851
ATGGAGGATTTACCAGAAGACTTGAGATCATTTCTAGAGAAACAGCCGTGCTTTGAGCTCACAGAGTCGAAAAGgATTAAGTGTGTGCTGAATGGACACGAGTTTCCCTGTAGTCTCTCTGAACTTCAACACTTCACGTCCGGCAAGAAATATAAGAAGCTCAGCGCACAGGAGCAGTTTAACTACAGCCAGTACGAGCCGCACATAACCAGCAGCAGTAAACAACCTAATCATCTTTTCTGCAAACTCACGTTACGTCACATTAACCGTGAGCCGAAGGAGGTTCTGCGACACGTCAGCGGCAAACGCTACCAGAAGGCTTTAGCGCAGTatgagGAGTGTGTGCGTCAGGGTGTGAAGTTTGTGCCTGTGCAGCTCAGGAAGAAGCAGAGACGCACAGAGAGCGATGAGGACACAGACAGACAAGTACAGAAGAAGACGAAGAAGAAGCGGACGGAGGACAGCGGTGTGTGGGCTCCCAGCAGCAGTGAAGAAGACAACAGCGACTCTGAGGACAGCATGTCTGATCTCTATCCACCATCAATGTTCAGACTGAAGAACGCAGATGATGAGCAGGAGATGAAAGATGAGGATGAGGATTTTCAGACTGATGAAGATGAAGAGGAAATGGAAGTAGAAAACCAGGAGCAGAAACGCAGGAAGGTTCAGTCTGCTGGATTTACTAAGAAGTTTAAGAAGAACAATAAGAAGAAGGGTTTTAAACGTGTCGGCAGAGTCAACGGAAAATAATAAAGTCTTTAATTGACTCAGATTGTGAtctttgctgttgttgtttctgGGAATATCAGATGCATTCATATACAgacattcagttcaattcatctttatttctcgagcgcttttacaatgtagactgtgtcaaagcagcttcacatagttcagatttcagagttcagttcagtccaaacactgaagagcaaatccagccATGTGCAGCTCAACAAGTCCTGATCCGAGCAAGCCAGtgacagtggaggaacaaacttcaccaattgatgaagtgaaggggaaaaaccttgagagaaaccaggctcttaTGGGCTTGACCATTATTTTTCTTGCCTAAACTTGCTGTTTGGAGCTGCAGTTTAGTCGCTGGAGAAGCTGGatatccatcgtggagaagctgccgGTGTAAGTGGGTGACCAgactggcccacaggatcaatgcggggACTCGGTTGTCACGGTGGtgtttcaggaatcagtctcatgctctccactcctccatgaccaccacagcatcagctctggatacggcctggtccgggATTATGGACACCTTgtgatcatctcttcacaggtcttggatcatcAGTGGCGCTGCGTAGTCTGAGGGCTTCAGGATGAGCATCCCCAGGTGGAattagagaataaagagaattaTTAGCGTAGCTGCTGACCATAGTGTTAATAAACGACAtgcagaaatgagttatcaatgaaaatagcagttatagAAACACACGTAAAGCATATCAGAGTATCTAACACAATGCCTGGTGTATTAAGACACTGCTcgcagagccacttgggctcaaatgagggggagcttgagctccaatttctcctcctataagctgttttaatgcgtacacccacccctaaccccaacccccagtgacatcacttgtagaggaagtgcaaggaaggaggagctggagctcaagctcccccttaccggagctcagctctgcccaagtggctctgcagtgagcaccacctggggagtgtgtcctacaggagGTTGTCAAGCCACTCATGCATCATCCCGAGGGTAATGCTTTACTAAACAGTTAGGTCTTTCAGACGTTCATAGTAAGAGTAGTATTAATGATCATTTCAATATATATCTATTATGTTTCTATCTTTATTTGTGCTATTATATGGAGAGTATTATATAAGAGTATATATTATACACTCTTATAAAAATACTCTTAGACTAAATACTCTTAATAATAGTATTTGAatgtaataaacatatttttaacattataaaatgtttataatatgcTATATTGTTCATGTAATTATGTGATAAATTCCAGTTCAGTTATTTTCACTTCTCACTATGTttactatatataataaataaaaagtatatatatttttaaaatgtacataaacaTAATTCCAAACATGCGTGATTACAAAAATACGGATCAAAAGCATTATTTTAATCTATATATTCTACTTATTCACTGTTTATTAATAACCTATGGCATATTTAATTACTTTAGAAtattcatcagccaatcaaaaccAAACATTGATTTCTTTATGGCTTATTTTAATAGTGTAAAATATTACAAGCCTTAACAAGGTAACCCTCTTTCAGCTTTGCGCATTAATCCAGCACTAAATGCTGTTGTATTTTCAATATAGCTGATTGCATGTGTAAAATGAGCGTTGCAGCAGATGCGTCTGTTATATTAATGCTCGTTTATTGTCCTTATCTAATGTGGAGAATCATGGATCAATATTTACAGTGTGTTTTACAgctaaatgagtgtgtgtgtgtttgtgtgcggaGGAAGGTAAAGAGTCTGGGCTTTTCTAGCTGTTGGATTTGAtgaatgtgttttatatttatacatgaagtgcattacagatttattttgatgaataacaaaatatctgtgtctgtattttatgtttttttatgagtAGATTTAATTAATTTGGTTTCTTTGAGAATAATAACAGTAGTAAATAATTTcagaaatgatttatttatttgttattttatttattatgtttattaatatattatcattcaatatattgaattatta

Function

symbol description
surf2 Orthologous to human SURF2 (surfeit 2).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-86 Orthologous to human SURF2 (surfeit 2).

Ensembl:

ensembl_id ENSDARG00000112476

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059851 True 2816 mRNA 0.39 6 1203767 1218801

Neighbor

gene id symbol gene type direction distance location
XLOC_030730 surf4 coding downstream 312 1180703 ~ 1203455 (-)
XLOC_030731 CU694263.1 coding downstream 22243 1181409 ~ 1181524 (-)
XLOC_030728 NA coding downstream 119018 1006450 ~ 1084749 (-)
XLOC_030729 si:zfos-128g4.1 coding downstream 127336 1072930 ~ 1076431 (-)
XLOC_030727 mbd2 coding downstream 156263 998296 ~ 1047504 (-)
XLOC_030733 ciz1a coding upstream 20856 1239657 ~ 1274811 (-)
XLOC_030734 NA coding upstream 99089 1317890 ~ 1419531 (-)
XLOC_030735 dre-mir-199-2 coding upstream 157972 1376773 ~ 1376868 (-)
XLOC_030736 golga2 coding upstream 213273 1432074 ~ 1487262 (-)
XLOC_030737 mcc coding upstream 449677 1668478 ~ 1827575 (-)
XLOC_030726 FP102032.1 non-coding downstream 205839 997812 ~ 997928 (-)
XLOC_030725 NA non-coding downstream 277690 921488 ~ 926077 (-)
XLOC_030724 BX537263.4 non-coding downstream 367477 836137 ~ 836290 (-)
XLOC_030739 dre-mir-101b non-coding upstream 618348 1837149 ~ 1837260 (-)
XLOC_030740 NA non-coding upstream 660710 1879511 ~ 1906537 (-)
XLOC_030742 CT573103.1 non-coding upstream 733851 1952652 ~ 1952778 (-)

Expression


Co-expression Network