XLOC_030733 (ciz1a)


Basic Information

Item Value
gene id XLOC_030733
gene name ciz1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 1239657 ~ 1274811 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059852
CCGGTGAATGCGAGCGAGTGTTAGCACCAGTCAATGGTTAGCACGACGCTAATGTGACAGGGGAAGTTTCAACAGGCTGTCGCTCGTTTCTCCTCTAATAAACTCACTATTTCGTCAGTAAACTCGGTTTGGTGAATGGTCAGGATGTTCAACCCTCATCagcaccagcagcagcagcagcatcagtTTCATCAGCACCTCCGTCAGCTCCAGCAGCTCTTTCAGCAGCAGACGCCTCCGCCTCcgcctccacctcctcctccacCACAGCCTCCACCTGCACACCACATCACACACCACCACCAGGCCGCACGGCCGATGGCAGTTCctgctccagctcctcctccagCCCGCATGGTGAACCTCTGCTCCGCCACGCAGACCATCATCGCTCCCAATCCCATGCTGCAGGGGGCGCTGCTGATGCAACAGATGCAGGGCAGCATGCGTGGCTTCGCTATGGGAGGTCAGCAGTTTCCTCCGTTCTTCGCTGCTGGGTCTCGAGCGTCTCTTCTGGGTCCTGTTCCAATGGGAGTCGCCATCAAAACACCACACATGGGGTTCCCTCGACATTTCACACCGCACGCTCGCTATTTCCCCAATgatTATCAGACCCCTCAGCCGGACAGGAAGAGGGAGATTGAGCAGAAATCAGCAAACATCAGCAGCGGCCATTCAGCAGCCAGCAGCAGCAACGGCCAACCAGAAGCCGCCAGAAGCAGCAACGGCCAATCAGCAGCcaaaagcagcagcagcaacgACCAATCAGCAGCTAACAGCAGCAGCAATGGCCAATCAGTAGCTAGCAGCAGCAATGGCCAATCAGAAGccaaaagcagcagcagcagcagcagcagcagagCAGATGAAGCCGTCGCTGTGGCCGATCCAGGATCTCAGGGGTCTTCAGAGCAGCCCGATGAACCCGCGGCCAAAAAACACAAAACTCAAGAGTCAGAGGAGCCTTTGGAGAAAGATTCAGCTGAAAACACTGAATGTAAGAGCCCTGCAGATGCTGGAGATTCTCTACCAGAGGAAAGTGTTGTAAATGAACCACCGGCCACTGAAGCAGAAGAACAGTGTCAAGCGGACAAGcAGACTGATGCTGCAGATGTGGATCAGCCGATCAGTGGAGCTCCAGCAGATGCCGGCAGCTCTGATTCAGTGTCTGCAGTAAAGCAGCCGGAAGCGGCTCCAGTCCAGCACCAGCTCACAGACACGGCGGCAGCAGCAGAATCCTCCAGCAGCTTCTTCTGCTATATCTGCAACATCACCTGCCATAACCAGCAGAATTTCCAGAGCCATATGAACGGACTGACGCACCAGCAGAAGATGATGGAGATCCAGCACATGAGTAACGCCTGTCTGGTCACATTACTGCCGCGCGTCCAGGAGTCACTGCAGGGAGCAGCTCGCAAAGACGGTGAGAAGAGGCCTGGTCTGCAGAGATGGTGCTCCACCTGCCAGACTCACTTCACCAGCAACGTCATGGAGCACCGCAGAACCAAGGAGCACAAGCGCTTCAGTCGCTCCTCCAGCAGCAGTTGTACCGTCTGTAAGCTGAACTTCAGGACGGCCAGAGAGTTTGTGGAGCACATGCAGTCGGCGGAGCACAAGCAGAGAGTCCAGCAGCTGTGGAAGGAGTCTGGCTCCGGTTCTGTAGAGGAACTGAACACTGTGATGTTACTGGGAGAAGACGATGGAGAATTCTGCAGCGACGATGAGCGCGAGGATGAGGAGAACGGCAAGGAGGGTCTTTCTGCACAGATGGAGGTCACAATGGAAGATCTGGATGAAGACGAGGAGTTTGACTCAGACACAGTGTATGGATCTAGTTTTGTGGTTCCTGTGTCCGGGTTTCTCTGTCGACTCTGTGATCAGTTTTATCACTATGAGTCTTCGGCTCGACACGCTCACTGCAAGACCCTCAAACACTTCCAGAATCTGAAGCGTTATAAAGCCTTAAAGAAGCATGAAGACTCGGGTTCAACCTCAGCAGAAGCAGCAGAAGAAGTAGCAGTAGCAGCAGCAGAGGGACTCCTCATCGCAGAAGAAAGCTCTGTGGATCCGTCAGCGTCCCCGATCACCAACACCAGCAGTACACCACCACAGCAGGAGGAAAAACTGGAGCCGGAGGAGACTCTGAAGCCAGAACCAGAACCGGAGTCGGAGCTGGAAGAGAAACTAGAGCCGGAGCCAGAGCTGGAGGAGAGGAGCAGTGAACGCGGCCGCGGCAGGACctcagccaagaggagaggacgAGGAGGACGGCGGCGCTGACACGCAGCACAGGACCTCAGTGAAAGCACCCTCAGCTGTCCCTCCATTAGGGTTCGTGCCACACTCTCGACCTCTGACCCTGTTTGTACAGTAGTGTTTTAATGAGCACAAGCAGCTCCGCTCCAGAGGAGGACGAGGAGGATGATGATGTGCGCTTTAGTGTTTCATGTATATCAGGACGCCATactgaaccacacacacacacgtccaaGTCACACCGTACACCAACAATAATCATGGAAGAACAGTTTTTCAGCAGTTTTCACtgtgtatattaaatataaacaagtgtgtgtgtgtgtgtgtgtgtgtgaatacttCTTTTGCAAAAACAATCATGaatgcattaatattattattattattatgatgataagTCAcgtatttaatgtgatttatgaATGTCTGTTTTTGCAAATGAACTCTTCACATCGTGTGTCTCTTtttcaatgtttatatatattgaaatgtacacgcaaacacacgcacacacatgacACTCATATACACACGCTCTGAAAGCATGCGGAAAAATATACAAGCGAACTGAGGCTTGTCTTGGGACCATTGAGTTTTAAGAACCGTTGTCCTAACAATTGAATGTGCATTAATGTCAGCtaacatacacactcaaa
>TCONS_00059853
tccctccTAGCACCAACCCGGTGAATGCGAGCGAGTGTTAGCACCAGTCAATGGTTAGCACGACGCTAATGTGACAGGGGAAGTTTCAACAGGCTGTCGCTCGTTTCTCCTCTAATAAACTCACTATTTCGTCAGTAAACTCGGTTTGGTGAATGGTCAGGATGTTCAACCCTCATCagcaccagcagcagcagcagcatcagtTTCATCAGCACCTCCGTCAGCTCCAGCAGCTCTTTCAGCAGCAGACGCCTCCGCCTCcgcctccacctcctcctccacCACAGCCTCCACCTGCACACCACATCACACACCACCACCAGGCCGCACGGCCGATGGCAGTTCctgctccagctcctcctccagCCCGCATGGTGAACCTCTGCTCCGCCACGCAGACCATCATCGCTCCCAATCCCATGCTGCAGGGGGCGCTGCTGATGCAACAGATGCAGGGCAGCATGCGTGGCTTCGCTATGGGAGGTCAGCAGTTTCCTCCGTTCTTCGCTGCTGGGTCTCGAGCGTCTCTTCTGGGTCCTGTTCCAATGGGAGTCGCCATCAAAACACCACACATGGGGTTCCCTCGACATTTCACACCGCACGCTCGCTATTTCCCCAATgatTATCAGACCCCTCAGCCGGACAGGAAGAGGGAGATTGAGCAGAAATCAGCAAACATCAGCAGCGGCCATTCAGCAGCCAGCAGCAGCAACGGCCAACCAGAAGCCGCCAGAAGCAGCAACGGCCAATCAGCAGCcaaaagcagcagcagcaacgACCAATCAGCAGCTAACAGCAGCAGCAATGGCCAATCAGTAGCTAGCAGCAGCAATGGCCAATCAGAAGccaaaagcagcagcagcagcagcagcagcagagATGAAGCCGTCGCTGTGGCCGATCCAGGATCTCAGGGGTCTTCAGAGCAGCCCGATGAACCCGCGGCCAAAAAACACAAAACTCAAGAGTCAGAGGAGCCTTTGGAGAAAGATTCAGCTGAAAACACTGAATGTAAGAGCCCTGCAGATGCTGGAGATTCTCTACCAGAGGAAAGTGTTGTAAATGAACCACCGGCCACTGAAGCAGAAGAACAGTGTCAAGCGGACAAGACTGATGCTGCAGATGTGGATCAGCCGATCAGTGGAGCTCCAGCAGATGCCGGCAGCTCTGATTCAGTGTCTGCAGTAAAGCAGCCGGAAGCGGCTCCAGTCCAGCACCAGCTCACAGACACGGCGGCAGCAGCAGAATCCTCCAGCAGCTTCTTCTGCTATATCTGCAACATCACCTGCCATAACCAGCAGAATTTCCAGAGCCATATGAACGGACTGACGCACCAGCAGAAGATGATGGAGATCCAGCACATGAGTAACGCCTGTCTGGTCACATTACTGCCGCGCGTCCAGGAGTCACTGCAGGGAGCAGCTCGCAAAGACGGTGAGAAGAGGCCTGGTCTGCAGAGATGGTGCTCCACCTGCCAGACTCACTTCACCAGCAACGTCATGGAGCACCGCAGAACCAAGGAGCACAAGGTGAGCGGGAAGCTTCGCTCCTCCAGCAGCAGTTGTACCGTCTGTAAGCTGAACTTCAGGACGGCCAGAGAGTTTGTGGAGCACATGCAGTCGGCGGAGCACAAGCAGAGAGTCCAGCAG
>TCONS_00059854
CGGCCAAAAAACACAAAACTCAAGAGTCAGAGGAGCCTTTGGAGAAAGATTCAGCTGAAAACACTGAATGTAAGAGCCCTGCAGATGCTGGAGATTCTCTACCAGAGGAAAGTGTTGTAAATGAACCACCGGCCACTGAAGCAGAAGAACAGTGTCAAGCGGACAAGcAGACTGATGCTGCAGATGTGGATCAGCCGATCAGTGGAGCTCCAGCAGATGCCGGCAGCTCTGATTCAGTGTCTGCAGTAAAGCAGCCGGAAGCGGCTCCAGTCCAGCACCAGCTCACAGACACGGCGGCAGCAGCAGAATCCTCCAGCAGCTTCTTCTGCTATATCTGCAACATCACCTGCCATAACCAGCAGAATTTCCAGAGCCATATGAACGGACTGACGCACCAGCAGAAGATGATGGAGATCCAGCACATGAGTAACGCCTGTCTGGTCACATTACTGCCGCGCGTCCAGGAGTCACTGCAGGGAGCAGCTCGCAAAGACGGTGAGAAGAGGCCTGGTCTGCAGAGATGGTGCTCCACCTGCCAGACTCACTTCACCAGCAACGTCATGG

Function

symbol description
ciz1a Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be active in nucleus. Orthologous to human CIZ1 (CDKN1A interacting zinc finger protein 1).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-222 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be active in nucleus. Orthologous to human CIZ1 (CDKN1A interacting zinc finger protein 1).

Ensembl:

ensembl_id ENSDARG00000089781

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059852 False 2915 mRNA 0.52 16 1239657 1274794
TCONS_00059853 False 1649 mRNA 0.56 12 1247718 1274811
TCONS_00059854 True 564 mRNA 0.54 6 1250980 1264350

Neighbor

gene id symbol gene type direction distance location
XLOC_030732 surf2 coding downstream 20856 1203767 ~ 1218801 (-)
XLOC_030730 surf4 coding downstream 36202 1180703 ~ 1203455 (-)
XLOC_030731 CU694263.1 coding downstream 58133 1181409 ~ 1181524 (-)
XLOC_030728 NA coding downstream 154908 1006450 ~ 1084749 (-)
XLOC_030729 si:zfos-128g4.1 coding downstream 163226 1072930 ~ 1076431 (-)
XLOC_030734 NA coding upstream 43079 1317890 ~ 1419531 (-)
XLOC_030735 dre-mir-199-2 coding upstream 101962 1376773 ~ 1376868 (-)
XLOC_030736 golga2 coding upstream 157263 1432074 ~ 1487262 (-)
XLOC_030737 mcc coding upstream 393667 1668478 ~ 1827575 (-)
XLOC_030738 rcl1 coding upstream 558930 1833741 ~ 1869982 (-)
XLOC_030726 FP102032.1 non-coding downstream 241729 997812 ~ 997928 (-)
XLOC_030725 NA non-coding downstream 313580 921488 ~ 926077 (-)
XLOC_030724 BX537263.4 non-coding downstream 403367 836137 ~ 836290 (-)
XLOC_030739 dre-mir-101b non-coding upstream 562338 1837149 ~ 1837260 (-)
XLOC_030740 NA non-coding upstream 604700 1879511 ~ 1906537 (-)
XLOC_030742 CT573103.1 non-coding upstream 677841 1952652 ~ 1952778 (-)

Expression


Co-expression Network