XLOC_030741 (rplp0)


Basic Information

Item Value
gene id XLOC_030741
gene name rplp0
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 1950660 ~ 1963498 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059865
CTCTTTCTTTCACGCGTCCCTACCGTGAGATTTTACAACCTTGTCTTTAAACCGGCTGTTCACCGATCCTTGGAAGCACTGCAAAGATGCCCAGGGAAGACAGGGCCACGTGGAAGTCCAACTACTTTCTGAAAATCATCCAACTGCTGGATGACTACCCCAAGTGTTTCATCGTGGGCGCAGACAATGTCGGCTCCAAGCAGATGCAGACCATCCGTCTGTCCCTGCGGGGCAAGGCCGTCGTGCTCATGGGGAAAAACACCATGATGAGGAAGGCCATCCGTGGCCACCTGGAAAACAACCCAGCTCTGGAGAGGCTGCTTCCCCACATCCGCGGGAACGTGGGCTTCGTCTTCACCAAGGAGGATCTGACTGAGGTCCGAGACCTGCTGCTGGCAAACAAAGTGCCCGCTGCTGCCCGTGCTGGTGCCATCGCCCCCTGTGAGGTGACCGTGCCGGCCCAGAACACCGGGCTCGGTCCTGAGAAGACCTCTTTCTTCCAGGCTTTGGGAATCACCACCAAGATCTCCAGAGGAACCATTGAAATCTTGAGTGACGTTCAGCTGATCAAACCTGGAGACAAGGTGGGCGCCAGCGAGGCCACGCTGCTGAACATGCTGAACATCTCGCCCTTCTCCTACGGGTTGATCATCCAGCAGGTGTATGATAACGGCAGTGTCTACAGCCCCGAGGTGCTGGACATCACTGAGGATGCCCTGCACAAGAGATTCCTGGAGGGTGTGAGGAACATCGCCAGTGTGTGTCTGCAGATCGGCTACCCAACTCTTGCTTCCATCCCTCACACTATCATCAATGGATACAAGAGGGTCCTGGCTGTCACTGTCGAAACAGACTACACATTCCCCTTGGCTGAGAAGGTGAAGGCCTACCTGGCTGATCCCACCGCTTTCGCTGTTGCAGCCCCTGTTGCGGCAGCTACAGAGCAGAAATCCGCTGCTCCTGCGGCCAAAGAGGAGGCACCCAAGGAGGAATCTGAGGAGTCTGATGAAGACATGGGCTTCGGCCTGTTTGATTAAACCAGACACCGAATATCCATGTCTGTTTAACATCAATAAAACATCTGGAAACAA
>TCONS_00059867
agatagagctaaaccctgcagggacaatGGCCCaacaggattggtgacccctgcctcaAGCCATCACAAATGCATTATGATTTTACAACCTTGTCTTTAAACCGGCTGTTCACCGATCCTTGGAAGCACTGCAAAGATGCCCAGGGAAGACAGGGCCACGTGGAAGTCCAACTACTTTCTGAAAATCATCCAACTGCTGGATGACTACCCCAAGTGTTTCATCGTGGGCGCAGACAATGTCGGCTCCAAGCAGATGCAGACCATCCGTCTGTCCCTGCGGGGCAAGGCCGTCGTGCTCATGGGGAAAAACACCATGATGAGGAAGGCCATCCGTGGCCACCTGGAAAACAACCCAGCTCTGGAGAGGCTGCTTCCCCACATCCGCGGGAACGTGGGCTTCGTCTTCACCAAGGAGGATCTGACTGAGGTCCGAGACCTGCTGCTGGCAAACAAAGTGCCCGCTGCTGCCCGTGCTGGTGCCATCGCCCCCTGTGAGGTGACCGTGCCGGCCCAGAACACCGGGCTCGGTCCTGAGAAGACCTCTTTCTTCCAGGCTTTGGGAATCACCACCAAGATCTCCAGAGGAACCATTGAAATCTTGGTG

Function

symbol description
rplp0 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in cytoplasm; nucleus; and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in several structures, including brain; digestive system; eye; otic vesicle; and ovary. Orthologous to several human genes including RPLP0 (ribosomal protein lateral stalk subunit P0).

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0043009 chordate embryonic development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003735 structural constituent of ribosome molecular_function
GO:0070180 large ribosomal subunit rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-000629-1 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in cytoplasm; nucleus; and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in several structures, including brain; digestive system; eye; otic vesicle; and ovary. Orthologous to several human genes including RPLP0 (ribosomal protein lateral stalk subunit P0).

Ensembl:

ensembl_id ENSDARG00000051783

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059865 False 1091 mRNA 0.55 8 1950660 1963498
TCONS_00059867 True 604 mRNA 0.56 5 1955655 1962500

Neighbor

gene id symbol gene type direction distance location
XLOC_030740 NA coding downstream 44123 1879511 ~ 1906537 (-)
XLOC_030738 rcl1 coding downstream 80678 1833741 ~ 1869982 (-)
XLOC_030739 dre-mir-101b coding downstream 113400 1837149 ~ 1837260 (-)
XLOC_030737 mcc coding downstream 123085 1668478 ~ 1827575 (-)
XLOC_030736 golga2 coding downstream 463398 1432074 ~ 1487262 (-)
XLOC_030745 NA coding upstream 25962 1989460 ~ 1991666 (-)
XLOC_030746 NA coding upstream 34266 1997764 ~ 1999493 (-)
XLOC_030747 gusb coding upstream 102764 2066262 ~ 2112030 (-)
XLOC_030748 CR931815.1 coding upstream 249174 2212672 ~ 2212788 (-)
XLOC_030749 ca4a coding upstream 278225 2241723 ~ 2282256 (-)
XLOC_030734 NA non-coding downstream 531129 1317890 ~ 1419531 (-)
XLOC_030735 dre-mir-199-2 non-coding downstream 573792 1376773 ~ 1376868 (-)
XLOC_030731 CU694263.1 non-coding downstream 769136 1181409 ~ 1181524 (-)
XLOC_030755 FQ323163.1 non-coding upstream 808791 2772289 ~ 2775472 (-)
XLOC_030756 NA non-coding upstream 1123733 3087231 ~ 3089463 (-)

Expression


Co-expression Network