XLOC_030745


Basic Information

Item Value
gene id XLOC_030745
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 1989460 ~ 1991666 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061912
cTTTCCTAAAAACAGTTTTTCCTCATTCATTTCTGGCGTGATTTTCTTTATGCAGGACACACATTACATGTTCGCCTTTTTTTCAAACTCTGAATCAGAAAACTGAGCTGTTTCTGATTTCCAGATTCGTTCTCAAACATCTGCTTCAGTCTTGATAGTGTGCGagtctgtaaacacacacaaagctTTCTGACAGTGGTGTTTTAGCACAGAGGAACGCACCGGTCCCGTAAACAGAACACATGCAGACATTCTGCACAGCTGGAGTCCCTGCAGTCGGTGTGTGTGAAAGAAGCGTGACATCATCAGATTTACAGCAGTATAAACTCACTCAGGTCTACAAAAGATCAGTctgttacacacacatacacctactcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtattagTCAAACACACACCGTCCTTCCTCTGTGTGTAGTTCTGTTATCAGTCGAATACACACCGTCGCCTTACCTCAGTgtcagtgtgtctgtgtgaatgagagagagagagaatgtctgtgaaagtgtgtatgtgtgtatggttCTTTAGACTGTCAAACACATTTTTACtcacgatgtgtgtgtgtggttctggtATCAGTCAAACACACCGTCTTTACtcagtatgtgtgtgcgcgtgcctgtaagtgtgtgtgtgtgtgtgtggttctagtATGATTCTTTACTCAGTGTGcacagtatgtgtgtgcgtgcctgtaagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttctggtATCAGTCAAACACACTGTCTttactcagtgtgtgtgtgtgtgtgttagaaagAGAGTGTCTGTGAAAGAGTATGTCACCGTCTTTTCTCatagtgtgtatgtgagagacactgcgtgtgtgtctgtgtgtatgtgagagtgtgtatgtatgtgtgcatgtgagtgtgtatgagaataaaagcatatgtgtttgtgtgagtgtgtgtctgtgtgtgagagcatgtgtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctggtatCAGTCAAACACTCCATCTTTCCTTAGTGTGTATGAACAGTCAGGACTCCATTTCCCATCATGCATCATttggtgtgtgtttatatgtgtgtgtgtgtgtgtgtgcgtgtgagtgtgtatgtgtgtgtgagagagagagaataagagTGCATATAagcatgtgttgttgttgttgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagaatgagagtgtgtatgagtCTGTCTGTCCATGTGCATGTATGTgagtgcgtgagagagagagagtgtgtgtgtgtgtgtgtgtttctagtaTTAGTCACATATTTCCTCAGTGTGGATGAACAGTCAGGACTCAATTTCCCATCATGCATCATTTGGTGAAGCTGCAGTGtgtgtccagtgtgtgtgtgtgtgtgtgttagctctTGATTGCGCGCAGTTTCCTCCTGAAGTACTCTGGCGCGGCCTCGTGCAGCCAGTCAGTCTGTATGAGACACAGATCCCGCATGTAGCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061912 True 1562 lncRNA 0.44 2 1989460 1991666

Neighbor

gene id symbol gene type direction distance location
XLOC_030741 rplp0 coding downstream 25962 1950660 ~ 1963498 (-)
XLOC_030744 CT573103.2 coding downstream 27051 1962282 ~ 1962409 (-)
XLOC_030743 CT573103.5 coding downstream 29260 1960073 ~ 1960200 (-)
XLOC_030742 CT573103.1 coding downstream 36682 1952652 ~ 1952778 (-)
XLOC_030740 NA coding downstream 82923 1879511 ~ 1906537 (-)
XLOC_030746 NA coding upstream 6098 1997764 ~ 1999493 (-)
XLOC_030747 gusb coding upstream 74596 2066262 ~ 2112030 (-)
XLOC_030748 CR931815.1 coding upstream 221006 2212672 ~ 2212788 (-)
XLOC_030749 ca4a coding upstream 250057 2241723 ~ 2282256 (-)
XLOC_030750 cita coding upstream 417888 2409554 ~ 2636078 (-)
XLOC_030739 dre-mir-101b non-coding downstream 152200 1837149 ~ 1837260 (-)
XLOC_030755 FQ323163.1 non-coding upstream 780623 2772289 ~ 2775472 (-)
XLOC_030756 NA non-coding upstream 1095565 3087231 ~ 3089463 (-)
XLOC_030758 NA non-coding upstream 1175533 3167199 ~ 3169025 (-)

Expression


Co-expression Network