XLOC_030751 (RAB35)


Basic Information

Item Value
gene id XLOC_030751
gene name RAB35
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 2651412 ~ 2676783 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059876
ctgtcgccatcttgtggataaaaACGTCAACTGTCGccgacgagctctctcagacgttgtaaatattttaaaataggcactattcttgcaaataaactgcataattgcaatctaaacaactacattctccactaaaaaagcCTAAAAAGTACTGTACTTCAGCAACTTCACTTGCTTCCTGTTAAATCAAGTATTGGTTTTAAGACTCTGGTTTTAACATACAAAGCAGCACACGGGCTAGCACCTGACTACATTTGTGACCTGGTTTCTCTGGCCACTCCCACCCGCAGTCTTCATCCCTCATCTGCAATCTTGCTGTATCAGCCACGCTGTAAACTGAAGACTATGGGTGGTCGTACAGTGTGCCTAAGCTATGGAATGGCCTACCCACCAGCTTCAGGAATGCTGTTTCTCTGgattgttttaagaaacttcttaagactcacccttttaccgttgcttttaacttagattgattatttttgtcattttatcatCCAATTGTATtgaatcattcatattttattgcggtctttttattctattttattttctgactgtttttattgttctgctttgtttgcCTTGTATGCCTGTTAGCGCTTTGGGACTGAGAAAAGcgtgttataaataaaatttattattattattattattattattgttgttattaaaagtatattttgttgtctaacagcagtaatatttgtcagactgtagtgtctctgcttgttgctgactgtatgtgggcggagtaatacacaaagggtaaagaggctgtactgatgatgatattacttaaatatatcacaaatatcagccaatcagattcgagatccagacaggactgttgtataaataataataaatgttacctAAGATGTGCCAGCTAGAAAAAAGCCATTTAGTATAGATAAATTTAGTATAAATTTGTGTTGGgttgtttgttgttttgactGTAATTGCACATTTTTAATTGTCATGTTTTGTGTTTCCAGGTAGCTACATCACCACCATCGGTGTGGACTTCAAGATCCGCACAGTGGAAATAAACGGGGAGAAAGTCAAGTTGCAGATTTGGGATACAGCAGGCCAGGAGAGATTCAGGACAATCACCTCCACGTACTATAGAGGCACGCACGGTGTAATAGTGGTTTACGACGTCACCAGCGCCGAGTCTTTTGTAAACGTCAAGCGCTGGCTGCATGAAATCAATCAAAACTGTGACGACGTTTGTCGAATATTAGTGGGCAATAAGAATGACGATCCGGCCTCTAAAGTGGTGGAGACCAACGATGCACAGAAGTTTGCAGAGCAGATGGGTATCCGGCTGTTCGAGACCAGCGCCAAAGAGAACCTCAACGTGGAGGACGTGAGTCTGGCTTTACAGAGACTAGCGAACATTCATCACATTAAACACACAGTTAGAACAAAAATCAGCagtctgtcgtcatttactcgcCTGTTCAAacccttctgttgaacactggtGACGATATGCTGGACAAACTGACATTGTCTTTCAGTGTATTATTTGTTCCTATTATTGATGTTATTGGCTGCTTttgtccagcattcttcagaatatcttgtgttCGACATAAGAAAGTAAGTCAGAAAATGGTAAACCTTGTAAATGAGGAGGAAATTTTGTCAGCGCAGTAGCCCAGTGGTTAGCGTGCAAGCATATGGTGCGGATATGGGAGCTACAGATGTTccgagttcgaatcctggcttGTGGACCGTTCCCGATCCTACCCCCTCTCTCTTCTACTTCACTTCCTGTCAACCTATTGTCCTGTCAAATAAGggcaaaaatgccaaaaataatctttataaataaataaataattaaaataatgaggaaaatgtttatttctgctaaactacaattaaaactaaaataaaacacacagacagGAAAGACAAAAAGTAACAaataagtgtaatgtaaacaaacCTAAATAAAGACAATCTTAAAGgatctttaatgaaaatatttaaataattttttgttaacatagtactaataataataattatatatatataaattataaaattataataataataatttttgag
>TCONS_00059877
CTTCTCTCATCTGACCAGAGATTGTTATGCATCCcaaagtcgaggctgaaatgcaggggtgaGCGGGCTTTCACAGTAGCTGGTCCTAccttgtggaatgctctgcccctctgtattagatCTATATCATCTCTGTCTGCTTTTAAATCTACGCTGAAAACTTACCTTTTTCATTTGGCGttttatcagtgagaattgtttgttttagctttaATTTTATACTTGTTCTTTGTGATTTGTATTTTTCAGCACATTGTTTAACCTTTGGTTGTttataatagtgctatataaataaaattgacaaaatacaagaaattgaataaaaatgcaacaTTAAATATATTCGCGCTTATACAGAAAGTAGATgaaacagcgccccctgctgttGAATGTTCTGCAATGCTGCTGTGTCTGCTGCGCGTGCGCAGCTCCAGTGAGCggggtttgtgtgtatgtgtgtgtgtgaatgagcggcGGGCGGCAGCAGGTCAGTGAAGAGCTAACGGATGTGAGACTCCGAAAGCCAGCAAAGCGCTGTAAATAAACCGGTGATCGGGACCGGCGCTGGAGCTCATACCGCCGGGAGAGGCGGAGCAGGAGGCCTCTCTGTGCGGGACTCGGGCGGAGCGGGGCCATGGCGCGGGATTATGATTACCTGTTCAAGCTGCTCATCATCGGGGACAGCGGTGTTGGCAAAAGTAGTTTACTGCTGAGGTTTGCTGATAACACTTTTTCAGGTAGCTACATCACCACCATCGGTGTGGACTTCAAGATCCGCACAGTGGAAATAAACGGGGAGAAAGTCAAGTTGCAGATTTGGGATACAGCAGGCCAGGAGAGATTCAGGACAATCACCTCCACGTACTATAGAGGCACGCACGGTGTAATAGTGGTTTACGACGTCACCAGCGCCGAGTCTTTTGTAAACGTCAAGCGCTGGCTGCATGAAATCAATCAAAACTGTGACGACGTTTGTCGAATATTAGTGGGCAATAAGAATGACGATCCGGCCTCTAAAGTGGTGGAGACCAACGATGCACAGAAGTTTGCAGAGCAGATGGGTATCCGGCTGTTCGAGACCAGCGCCAAAGAGAACCTCAACGTGGAGGACGTGAGTCTGGCTTTACAGAGACTAGCGAACATTCATCACATTAAACACACAGTTAGAACAAAAATCAGCagtctgtcgtcatttactcgcCTGTTCAAacccttctgttgaacactggtGACGATATGCTGGACAAACTGACATTGTCTTTCAGTGTATTATTTGTTCCTATTATTGATGTTATTGGCTGCTTttgtccagcattcttcagaatatcttgtgttCGACATAAGAAAGTAAGTCAGAAAATGGTAAACCTTGTAAATGAGGAGGAAATTTTGTCAGCGCAGTAGCCCAGTGGTTAGCGTGCAAGCATATGGTGCGGATATGGGAGCTACAGATGTTccgagttcgaatcctggcttGTGGACCGTTCCCGATCCTACCCCCTCTCTCTTCTACTTCACTTCCTGTCAACCTATTGTCCTGTCAAATAAGggcaaaaatgccaaaaataatctttataaataaataaataattaaaataatgaggaaaatgtttatttctgctaaactacaattaaaactaaaataaaacacacagacagGAAAGACAAAAAGTAACAaataagtgtaatgtaaacaaacCTAAATAAAGACAATCTTAAAGgatctttaatgaaaatatttaaataattttttgttaacatagtactaataataataattatatatatataaattataaaattataataataataatttttgag

Function

symbol description
rab35 Enables GTPase activity; guanyl ribonucleotide binding activity; and phosphatidylinositol-4,5-bisphosphate binding activity. Involved in several processes, including endosomal transport; plasma membrane to endosome transport; and protein localization to endosome. Located in several cellular components, including clathrin-coated endocytic vesicle; clathrin-coated pit; and intercellular bridge.

GO: NA

KEGG:

id description
ko04144 Endocytosis
ko04131 Membrane trafficking
ko04147 Exosome
ko04031 GTP-binding proteins

Ensembl:

ensembl_id ENSDARG00000102078

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059876 False 2085 mRNA 0.37 3 2651412 2672492
TCONS_00059877 True 1824 mRNA 0.42 5 2651412 2676783

Neighbor

gene id symbol gene type direction distance location
XLOC_030750 cita coding downstream 15334 2409554 ~ 2636078 (-)
XLOC_030749 ca4a coding downstream 369156 2241723 ~ 2282256 (-)
XLOC_030748 CR931815.1 coding downstream 438624 2212672 ~ 2212788 (-)
XLOC_030747 gusb coding downstream 539382 2066262 ~ 2112030 (-)
XLOC_030746 NA coding downstream 651919 1997764 ~ 1999493 (-)
XLOC_030752 gng10 coding upstream 3672 2680455 ~ 2689753 (-)
XLOC_030753 hspa5 coding upstream 36996 2713779 ~ 2721686 (-)
XLOC_030754 lzts3a coding upstream 65449 2742232 ~ 2752573 (-)
XLOC_030755 FQ323163.1 coding upstream 95506 2772289 ~ 2775472 (-)
XLOC_030756 NA coding upstream 410448 3087231 ~ 3089463 (-)
XLOC_030745 NA non-coding downstream 659746 1989460 ~ 1991666 (-)
XLOC_030744 CT573103.2 non-coding downstream 689003 1962282 ~ 1962409 (-)
XLOC_030743 CT573103.5 non-coding downstream 691212 1960073 ~ 1960200 (-)
XLOC_030758 NA non-coding upstream 490416 3167199 ~ 3169025 (-)
XLOC_030760 CABZ01076744.1 non-coding upstream 581340 3258123 ~ 3266117 (-)
XLOC_030761 CABZ01084961.1 non-coding upstream 634225 3311008 ~ 3430355 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000205_00877974_00888851 RAB35, BRAFLDRAFT_122037, RAB35.S, RAB35B, RAB35A, RAB35.L coding CI01000205 null 875573 ~ 889786 (-)