XLOC_030762


Basic Information

Item Value
gene id XLOC_030762
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 3352108 ~ 3354567 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061916
aaaatattatcagacaaactgtgaaaatttccttgctcacttgagaaatatttgtaaaaggaATCAATGTTTTACAGGAGAGCAAATCATTTTATATGAAGAGACCTGAGATGGGATGCGATTTTTAGTGCTGCTGCTGATGTATGCATGCTTCAACCCCcaacaccaaaacacacacacgctgtaATCCGTCACCGTCAGGTATCTGAATCCGCGACAAATCACGTGAGGGAGGCAAACGGCGCTTAAGGGTCTTTCTTCATGACTTATAAATGAGTTGAGGGGGGTCGAGGCTCATATTATCGGCCTCAGTGCTGCTGTAACCTCCGTCTCAATATTGCACAGCTTTCATTTCAGCTTTATCACTCTTTTATGAAGCCTAGCGAGCCCCCTACTCAGACAGCATTTTGAGGAAGACAATGGTTCGGTTCATGCAGTATTgaaaaccatttatttatttattggtttatttcaagtgtttatCACTAGGTTATGAACGTAAAACTtgtcttattttatattaatgactTCGTTCACTTCATTCTGTAATTTAAAAAGGACTAAATTCACAATGCACGACATGGCAAGCTGCATCCAGGataataccccccccccccccccttcccaaAAAATAAGAGCATAATAGAGTGACTTTAAGGACTTTTTCTTCATAGCTCAGTGTGGGAAATACTCCGGCATCAGTCATTGTGTGGATGTAGGTCACGGGAAGCCGGATCGGGAAGCTTTTATTCTTCTGCTCTAAATATCTAGACTGTGACTCTGAATGCTCTGAATGGAAGACGTTCAGGCAAAGAGAACGCAAACGGCAGTCACTCAGAGCGCTGTAAAGTTCAGGAGTTGATGAGGAGAAACTCAGAGCTGCTATCTCTCTGTTTGAAGTCTAGATGAAAGAGCAGCACAGAATATTAATGCACTGCTTTCCCAGTCTCTCCGTGCATGCAGTCACTTCACTCAAGCCCTGAGAGTCTATCAGTATTTGTGCTGAATGTAGAAAAACATCTTGTGGTTTATTTGTAGGGCTTTTCTCAATGTGTGCAGTTTTAAAAGCAGCTTGACAGATAATGCAggtttaaaaatgacaataaaatatcGTTTATTATAAGAGGTGAATGTTAAAGTGTTCATACATGCCTGTATGGCAGAAATTAAGACTGTAATTAAAACGCTGATTACATGTTACCATGATAATTTTTGAATTgtcctgtaataataataataataataataataataataataataatatatgattataacaacaggaacaaaaaaataaaatgggcttataacaaaaaataataataatgataatgataataatcatattaataataataataataataataataataataataatgatgatgttaTAGGATTATAACAACAGGAATAAAAAATAGgcttataacaaaaataataaataaaataaaagtaatgatGATGATATAGGATTATAAcagcaagaataaaaaaaataaa
>TCONS_00061917
aaaatattatcagacaaactgtgaaaatttccttgctcacttgagaaatatttgtaaaaggaATCAATGTTTTACAGGAGAGCAAATCATTTTATATGAAGAGACCTGAGATGGGATGCGATTTTTAGTGCTGCTGCTGATGTATGCATGCTTCAACCCCcaacaccaaaacacacacacgctgtaATCCGTCACCGTCAGGTATCTGAATCCGCGACAAATCACGTGAGGGAGGCAAACGGCGCTTAAGGGTCTTTCTTCATGACTTATAAATGAGTTGAGGGGGGTCGAGGCTCATATTATCGGCCTCAGTGCTGCTGTAACCTCCGTCTCAATATTGCACAGCTTTCATTTCAGCTTTATCACTCTTTTATGAAGCCTAGCGAGCCCCCTACTCAGACAGCATTTTGAGGAAGACAATGGTTCGGTTCATGCAGTATTgaaaaccatttatttatttattggtttatttcaagtgtttatCACTAGGTTATGAACGTAAAACTtgtcttattttatattaatgactTCGTTCACTTCATTCTGTAATTTAAAAAGGACTAAATTCACAATGCACGACATGGCAAGCTGCATCCAGGataataccccccccccccccccttcccaaAAAATAAGAGCATAATAGAGTGACTTTAAGGACTTTTTCTTCATAGCTCAGTGTGGGAAATACTCCGGCATCAGTCATTGTGTGGATGTAGGTCACGGGAAGCCGGATCGGGAAGCTTTTATTCTTCTGCTCTAAATATCTAGACTGTGACTCTGAATGCTCTGAATGGAAGACGTTCAGGCAAAGAGAACGCAAACGGCAGTCACTCAGAGCGCTGTAAAGTTCAGGAGTTGATGAGGAGAAACTCAGAGCTGCTATCTCTCTGTTTGAAGTCTAGATGAAAGAGCAGCACAGAATATTAATGCACTGCTTTCCCAGTCTCTCCGTGCATGCAGTCACTTCACTCAAGCCCTGAGAGTCTATCAGTATTTGTGCTGAATGTAGAAAAACATCTTGTGGTTTATTTGTAGGGCTTTTCTCAATGTGTGCAGTTTTAAAAGCAGCTTGACAGATAATGCAggtttaaaaatgacaataaaatatcGTTTATTATAAGAGGTGAATGTTAAAGTGTTCATACATGCCTGTATGGCAGAAATTAAGACTGTAATTAAAACGCTGATTACATGTTACCATGATAATTTTTGAATTgtcctgtaataataataataataataataataataataataataatatatgattataacaacaggaacaaaaaaataaaatgggcttataacaaaaaataataataatgataatgataataatcatattaataataataataataataataataataataataatgatgatgttaTAGGATTATAACAACAGGAATAAAAAATAGgcttataacaaaaataataaataaataaaaattatgatgATATATGATTATAACAACAA

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0070069 cytochrome complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061916 False 1503 lncRNA 0.35 2 3352108 3354567
TCONS_00061917 True 1483 lncRNA 0.35 2 3352488 3354567

Neighbor

gene id symbol gene type direction distance location
XLOC_030760 CABZ01076744.1 coding downstream 85991 3258123 ~ 3266117 (-)
XLOC_030759 CABZ01076737.1 coding downstream 142763 3184755 ~ 3209345 (-)
XLOC_030758 NA coding downstream 183083 3167199 ~ 3169025 (-)
XLOC_030757 hsf5 coding downstream 233762 3094981 ~ 3118346 (-)
XLOC_030756 NA coding downstream 262645 3087231 ~ 3089463 (-)
XLOC_030763 NA coding upstream 119298 3473865 ~ 3501835 (-)
XLOC_030764 NA coding upstream 199033 3553600 ~ 3554809 (-)
XLOC_030765 hspb1 coding upstream 213449 3568016 ~ 3584815 (-)
XLOC_030766 si:zfos-375h5.1 coding upstream 256931 3611498 ~ 3627110 (-)
XLOC_030767 FO704648.2 coding upstream 306091 3660658 ~ 3670238 (-)
XLOC_030755 FQ323163.1 non-coding downstream 576636 2772289 ~ 2775472 (-)
XLOC_030748 CR931815.1 non-coding downstream 1139320 2212672 ~ 2212788 (-)
XLOC_030772 CU655870.1 non-coding upstream 581350 3935917 ~ 3936596 (-)
XLOC_030782 NA non-coding upstream 1266863 4621430 ~ 4622063 (-)

Expression


Co-expression Network