XLOC_030785 (CU915770.1)


Basic Information

Item Value
gene id XLOC_030785
gene name CU915770.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 4685675 ~ 4697367 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059919
ATTAAGTCAAGTGCAGTATACTTGGGTTCAATTTGagtcaactaaaaaaaaagctCAGCAGCATGTAGCCTTTTAAATtttagttgagtcaactttttgtgcagtttttaattttgagtTCAATACTATTAGTTCCCTTAATATATGTTCTGTGTTTTTCCATCAGGCAGCAGTCAGAGTTCATTCTGTGATGATCTTTCTCCAGGAGTCGAGAGGGGCCGCATGTACGCCACTCTGGGCCCCAACTGGAGGGCTCCTGTACGCAATTCCCCCAGAGGCCGCGGCCAGGCCCTCAGGTACACCTCTCCATCCTCTGGACCTCCGCCCGCTCCACCTGTCCTGGCATGCACTGTCTCTTCCTTCACATTACTCTAGTTCAGACTGTCACACGTCTCTCGACTTCTGTTTTCTCCAGAGTctcatcatctcagactgctgttATAGCACTCAGTCACTGCATAATAAAGCTCTGTCCACAACAACACGAGTATTTTCTAAACCAGTTTTTTTTCTACATGGTTTGGCTGTTTGTCCACATGAAAACGCAGGGCTCTaatttgacggtccatgcgcagggcgcaaacgctttcagagcgtgtcaggacgcgtttttgctaatttaaggacgggaaatctgccttgtgccaaggcgcatgttctaaaagggttgagtttattttcttaatgagttataggtgtgttttgagaataaaccaatcagagtcttatctcccattccctttaagagtcagctgcatcacaccaagagcgcattcgctatttacaggacgcaaagtaagtctaagtggaaaaaatgagcatttcacaagcaaacagttaacagttaacagttttttaacagaaaactgttaaacagagcatctactgcgtgagaatgagagataatggatctactttcactttcgctcttggatagggaaacctttacgcacagacatcaattagcctataaataattaatttcgtttgttaagtgcaaagatttgtttcaaaactatttctaaattcagttctgatttctagcaaacgaataaatgaacaacaataaccaagtgtggtcaaaatactgagttatttccaaatacacctgccatgccccatatggttttaaacctgacaggtggccaaatctaagcttgtttttaataaaac
>TCONS_00059920
AAATTACTTAAGTTACACTGTTGTCATTGTGTTGTCTAGAAATACAATGAATATATTAGTAATAACAATTATGAgtataaacatgtctgaaaagaTTGGGAAGAAATATCATTGTTTTTAAGATCATACATTacatagtaaacaatattttaccagTCATGCCTGCTGTTGTCCACACTAAAGCTCCATCTGATGTGGATCTGCTGTGTTTTTCTCTCTCAGGACTCAATAATGAGCACAGTGTTGATTGTGTCTCCCTCAAGAGGATGAGGGAATGCTAATATTAGTGTAGCGGCTGTGATGGCTAAAGCAGAGTCTCCACGTTTCCTTTCATTAAGTTTCATTGACTGTGAGACCAACAACAATCTAGCATGTTAATGTGAATTCATTCTTCTTCTCCTGTCTCTTTCTGCAGGTCCGTCTGAAGTGTCTCTCTCGATGAGATATAACCGTCGGCCCACCTGTCCTGATGCCACTGTTGGGGTCCACATGCACACCCCTCCACCCTCCCGCCACCGCAAGAGCCACAGCCTCGGGAATGCCATGATGTGGCATTTCGGTGTGGTGGAGAGTAAAAGTGCCACATTTCCCACAGAGAAACCACGCCACCTGCTGGACGACAGCTTCCTGGAGTCCCAGAGTCCAGCCCGAACCCATCCGCACAGCTCCTCTGTGTCCAACGGCATCTCTATAGGCAGCAGTCAGAGTTCATTCTGTGATGATCTTTCTCCAGGAGTCGAGAGGTGAGACTCGGTTTCATGTTATAAATGTGCCTAAATATCATCATCTGTTCATTTTGCAGCTTTAGTATgctctttccacactgtaaaaagtagcgtttctgtattttgtgatttatatatatttttttatttttaattctgctGTTTAAttctgcttttgagttgcatAATGAGAgcttaatctttcttccaacaacgtTTAACCTTGAAAAGGGAACTTTAATGAACGTCTTGAATATTTTGCAGTGGTATATTGTCTGTGTTAgtgttgtatatttgtatttattattaaaaccttgtaataaactgcagcacatgttctgttattttacagacttatttctctagatatttcttatacattatattatttcagactactaaaatgtctataaaagtcactttgttaaactgcagagttgaattttcaacatcaaaagtggacagagcagagatcaacatcccataatgaagttcacaaccgcaaataaacagaaaacacttgtgaatcactaaATACACAAACTGTTCATCAGGTGTAgagtaaaaaaaacatctgttatGCGATAGAAATAGTCTTTTTGGTGCAGTCTGCGCATTGGTAATGTTAATTAAAGCAACATCAATAAGTTGTAGATTTTTTGGAGAATGTGTCATCTTTGTCACTATTGAAGAAAATTTATGAAAATGAGCTCTTTTGTAAGGTATTTTGCTCTTAAATTTGATTATAAAAACAGTATTGTTTGAATTGTATTAGCAAATATTGAAATGaacttacactgtaaaagataTCCGCTAATTAAGTTTCTGTATTTTCTgagtattttacttttatttacagttgaattacattatgggatgttatgggatattgatctctgctctgtcgacttttaatgttgaaaatttacagtaaattctatagttttgtaataatttaaaggttaagaaataatatatagagaaataagtcagaACATGTGCTGGCGGTTTGTTATAAGTACATAAGTAAgacactatgggctctattttgacggtccatgcgcagagcgcaaaacgcagggcgcaaacgctttcagggcgtgtcaggacgtgtttttgctaatttaaggacgggaaatctgccttgcgcctcggcgcatggtctaaaaggattgagtttattttcttaatgagttataggtgtgttttgagaataaaccaattagagtctcatctcccattccctttaagagccagctgcgtcgcgccaagagcgcattcgctatttacaggatgcaaagtaagtctaagtggaaaaaatgagcatttaactagcaaacagttaacagtttttaacagaaaactgttaaacagagcatctactgcgtgagaatgagagataatggatcactttcacatttgctcttggatagggaaacctttacacacagacatcaattagtctataaa

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048285 organelle fission biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0007076 mitotic chromosome condensation biological_process
GO:0051301 cell division biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0000280 nuclear division biological_process
GO:0000793 condensed chromosome cellular_component
GO:0000794 condensed nuclear chromosome cellular_component
GO:0000796 condensin complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:1902494 catalytic complex cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0005694 chromosome cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117640

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059919 False 1173 lncRNA 0.42 2 4685675 4691128
TCONS_00059920 True 2195 lncRNA 0.37 3 4689462 4697367

Neighbor

gene id symbol gene type direction distance location
XLOC_030784 NA coding downstream 11810 4670271 ~ 4673865 (-)
XLOC_030783 FO834903.1 coding downstream 42386 4640459 ~ 4643289 (-)
XLOC_030782 NA coding downstream 63612 4621430 ~ 4622063 (-)
XLOC_030781 cst14b.1 coding downstream 153159 4523633 ~ 4532516 (-)
XLOC_030780 zgc:153704 coding downstream 192173 4482437 ~ 4493502 (-)
XLOC_030786 CU915770.2 coding upstream 17365 4714732 ~ 4734142 (-)
XLOC_030787 NA coding upstream 167503 4864870 ~ 4907610 (-)
XLOC_030788 zbtb43 coding upstream 223725 4921092 ~ 4931266 (-)
XLOC_030789 BX511196.1 coding upstream 245231 4942598 ~ 4942712 (-)
XLOC_030790 lmx1ba coding upstream 335466 5032833 ~ 5147336 (-)
XLOC_030772 CU655870.1 non-coding downstream 749079 3935917 ~ 3936596 (-)
XLOC_030767 FO704648.2 non-coding downstream 1015437 3660658 ~ 3670238 (-)
XLOC_030791 NA non-coding upstream 459032 5156399 ~ 5158173 (-)
XLOC_030793 NA non-coding upstream 601494 5298861 ~ 5301748 (-)

Expression


Co-expression Network