XLOC_030796 (rabl6a)


Basic Information

Item Value
gene id XLOC_030796
gene name rabl6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 5614620 ~ 5655839 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059935
CTTAAACCCCGCCTTcccagtagttgctgttctgctattggctggagcggCCCAAAGCTGAAATTAACACAAATGGCAGGAGTCGAGATGAGGGCAGAAAATTACAACCAATCAGAGAGGGTTTCACTCATTTATAGTggtttaaagactaaatgtttgcacattTACACAGTTTTAGTCGGAGTTAGAATTAATTCAATAGAAAAATATCTtttatgcagtttattttaatatcatgaaATCAATAAATGATTTAGAACATGGCAAAAAAATAGCATTGTTCTATGGAAACTATTTATCAAAAGAAACAACAGCgcatatttttaaagtattgtgCAGTCCTAACTCGAATACAACCGCtttggataaaaaataaataaataataataataattattattatatataatattttatgtttgCTGTGAAGATGATCACTCTTGTGAAAGCATACATAccctggacagcttttgtaagtGGAAGGAAACCAATTTAGCTTGTCTACTCCGGTGCATATACTGGGAAAGCATATGAACATTACTCTTCTTGTACCGCCACACTAATTGTAATATCTGTGTTTTTCCAACTACTGCAGGGAAAGGCAAAAGACGCGGGGAAAATCTGAAACTGGAAAACGAACCGCAGGAGTCTGAAACAGAGATGGCTCTTGACGCAGAGTTTCTGGATGTCTATAAGAACTGTAATGGCGTGATTATGATGTTCGACATCACCAAACAGTGgaCATTTAATTACATTCTTAGGGAGCTGCCAAAAGTGCCAACGCACATCCCAGTGTGTGTCCTGGGTAACCAACGGGACATGGGCGAGCACAGGGTCATCCTACCTGATGACATCAGAGACTTCATCAACAGTCTGAACAGACCTCCAGGCTCCTCCTACATCCACTATGCCGAGTCCTCCATGAAAAACGGCTTTGGTCTCAAATACCTCCATCGCTTCTTCAACATCCCGTTCCTGCAGCTACAGAGGGAGACTCTGTTACGGCAACTGGAGACAAATCAGCTTGACATCGATGCCACGCTGGAGGAGCTCAGTGTTCAGCAGGAGACAGAGGACCAGAACTATGACATATTTCTTGAGATGATGGAAGCACGCAAAGCTTACGGCTCTCCGGCGCCCTCTAATGGCCAGAGCCCGTCATCTGGCTCCCAGTCTCCTGTGGTTCTTCCTGGAGCCGCTTCTCCCAGTAACTCTAGCCCCAGCACCCCACAGGCTCCTGTCCCACTTCAGACACCTGCCCCACCACCTCCTCCATCTATACCACACCCTACAGCCCAGACCACAGCCACACAAGTCCACCAGACACCATCACAAACCTTAGAGGCTTCACCCGCCACACCGACACCTGCTCCTGCCCAACTTGCAGCTCCTGCTGCACAGAAAAGAGGATTCATCTCACGTTTGTTTGGATCGTCCGCTGCTGAGACTTCACCAGACAAACCAGAGTCTACAGGCTCTGAAAGCGTAAAGGCCTCTGGAAAGGTGCAGAGTGTGGATGAATTTGTGCCGGAGGTGGGATTGGACCGAACCTTTCTGGATGACGgtggagcagcagcagcagcagcggctAAATCAAAGAACAAACCTCCAGCCTCAGCTCCCATCCTGGACAGTGACAGTGATGGAGAGGGACGGGGAAATCCTCTGGTCTCCGGCTTCCAGGATGATTTAGATCCAGATGACAGAGTGCCGAGTCAGCCTGCAGTTAAAGCAGTGGTGCCGAGCAAAGACATCACACTGACCAGTGATGAAGAAGCGGAAGATTCACCTGTTCACCAGCAAAAAGCCATCAGCAGCTCAGGACCAAACACAAAGggATCTTCACTGAACTCTGTCAAACAGCTGCAAACAAAGTCAAAGGCAGCTGAAAGGCCCCAAAGCCTGAAGACCACAGCGGGATCTGCAGTGCAGAGAGCCAGCCTGAAGACAGGAGGCACTGTTGAGGCAGACTCCGATTCAGACCGAGAGGCTCCAGTCGCTCAGCAGATGCTTTCATTTGTCATGGACGACCCGGATTTTGAGAGCGAAGAGATTGATATTCCCAAAGTCAAGAAGGGGGCTTTTTCTGCTCGAGATGACTTTTCTGACCGCTCGGATGATGGTTTTGTGTTAGCTGGACTCCCAGAGCTTCCCAAACCTGTTGCGCCGTCATTTCAGACCCTTAATAGTGACATTGACCTGTTCGGCTTGGGGTTTGAAGAGGCGACACCTAAAACTAAAGAAAGCAGTGAAGATCAGGAAGATAATGACAGCAGACACTCCACTAAGgacaagaaaaagaagaaaaagaaaagcaaagaaGTGAGATATGAAAAAATTGACCATATTATTGATTGAAAGCGATTAATAAATCAGCCTGTGCAGTTAAGCTGACAAtatttgtctatttttaaatgtatttctgttAGGAAACAGTAAGAAAACAAATAGAGAAATTGATTCACAAATCCACATGCAATACTCAAGCAGAATGCATTTCActaacacagtggttctcaaacttttttcaccaagtatcacctcagaaaaaaaatgttgctccaagtaccaccttaatGACCTGTCagcattatataaaaatatgGGATACGCCCCCAATATCcattacaaatatggggaggaaatTAGCTTCACATGATAGAAtgcataacaaacattagaaaattttaaataaaataaaaggtttagcttattaaaatcaattcactAATCACATCAGTGTAATTGTACACGTTAAAGggttaaaaggtttttttttttttttttttttttttttttttactttaattatttagcgattcctccacgtaccactagaaggaagcctgcgtaccactagtggtacacgtaccacagtttgagaaccactgcactaatgCATAGAAGAAATTAGTTAAATTAATATGCTTATCCAATTTTATTTCTTGttattaaaggcacaatatgtaagtttttttaaccaaaaaacaCAGAAcagttatatattttgctgacttaagTACTTcaattatcccaaatgttttaaaaattgctgaaatacaatgaaataagctattttaactTGTAAGACAGAGGGTGTgctgtgtgttcatgctaatAACGTCACACACCCtcgatttctgttttgttttgtttttagaaaacgGGTAAGGTTAGTTGTATTTATATATCGCATTTATTGTGTAAAGccattaggcttgggcggtatacAAATTTTGgtaccgtcaaacctcctccctattttatccagtattaccgtgcataataaaaaaatatgacgtAATGAAACTGAGGTTCGCGGTCACCTGTTTATCTTGTTCGTATTAGAGATCTGGGTGGGGCACACACAGAAAGCGCGAGAGAGACGCACAGCACCacactctctctgtgtgtgtgtgtgtttgtgtgtgtgtgggtgtgggtgtgtgctttccgaataaagcgcgggagtggCTGCGCGGTCTTACAATATCGCTTCCGAGCAAGCAAGCACGCGCACATCCACgtggatgctgtgtgtgtgtgcctctctctttctctcattcatacacacacacacacacatcgagaGAGAGAACCAAGCGACACACAGACAGCAtgctctcttattcacacacacacacacacacacacacacacacacactgcaggtgACTTGGTGCGTGATTCAAAatcttacctcacctctctctcctccacactgtcccgtcatgacaatcacgcatactcatttgtaggcattaaataaataatatttattatttaatacttgtctcctactTAAGTGAATTGTTTTTATGAGGGTATAACGGTATTagaactgacaccgttgctatttttagatcctgcggtataccatattaccgtattactGCCCAAGCCTAAAAGCCATACACCCAAAgggcttcacaatcatgagagagGGTCGCCAGTGcgcagcagccacaggacaacggcgccagtgcgctcaccacacaccagctataggtttTGGCCAAGGACATCGGGGTTACACCCCCACTCTTTGCGAGAAGtgacatgggatttttaatgaccgcagagagtctcatctgaaagacggcgcccactgacagtatagtgtcccctttactttaCTAGGGCATTAGGTCTCACACAGACTGCGGgttgagcgcctcctgctggcctctctaacactacttccaacagcaacctagtgttccaaTGTGGTctgccatccaggtactgaccaggcttagccctgcttggcttcagtgaatAACCAATCTTGGCCtgctgggtgatatggctgtgaatCCAGCTGATACGGTAATATGGCTGTGAATACATCAGAGACTTCAATatattgtgcgtgtgtgtgtgtgttttaaactgcacagagcagcattactGTATAACAGAAGCCTAAAAAGTATTTAGTCTTATAAAACAAAGCTGCTGCTTCTCCTCGTGATCACGAGCTATGAACAGGAAGCGCTGGACGATGGCATAATTAAAGCTCCGCTGCTTTTGTGCATTTCTTTCATTTCCCTTCTGCTTTCAGCTTTACTCTGCTTCATGCTATCATGATAATAAGTGTTGAATACGTTAGCTCATCCATCCACATGATTCCTGCAGGAGTCCcgtaggatgtaatgaagaccacaactcccatgtcTTCTTATGCCGTCATCaaaatacacctttgtttgttgtgaaaacACTCCCTCTAGTGGAGTAAAGTTACATAATGTGCCTTTAATTATAACACCTTATATtcaaaaccagcaacctttttaatATCACCATCAGCTATAGAAAATGTATCATATCAATGTATTCTGTTTGCAAAACAAAATAAGTCCATGGCACTTGAAGAATAAGTAAACAAAGGTAAAAAGGCTTTATTAACATGgctattatattaaaaatagcaCTTATGAGTTagctttttttctcttattttgccttttactttatttcatttacATGCTTTAAAGAATCCCTTATCCAAAGagcaatagccc

Function

symbol description
rabl6a Predicted to enable GTP binding activity. Is expressed in several structures, including axis; central nervous system; forerunner cell group; hatching gland; and polster. Orthologous to human RABL6 (RAB, member RAS oncogene family like 6).

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6174 Predicted to enable GTP binding activity. Is expressed in several structures, including axis; central nervous system; forerunner cell group; hatching gland; and polster. Orthologous to human RABL6 (RAB, member RAS oncogene family like 6).

Ensembl:

ensembl_id ENSDARG00000079046

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059935 True 5027 mRNA 0.43 11 5614620 5655839

Neighbor

gene id symbol gene type direction distance location
XLOC_030795 NA coding downstream 110195 5499803 ~ 5504425 (-)
XLOC_030794 pbx3a coding downstream 220152 5302932 ~ 5394468 (-)
XLOC_030793 NA coding downstream 312872 5298861 ~ 5301748 (-)
XLOC_030792 mvb12ba coding downstream 371509 5171254 ~ 5243111 (-)
XLOC_030791 NA coding downstream 456447 5156399 ~ 5158173 (-)
XLOC_030797 CABZ01075628.1 coding upstream 11025 5666864 ~ 5669879 (-)
XLOC_030798 TNC coding upstream 52737 5708576 ~ 5831037 (-)
XLOC_030799 NA coding upstream 386227 6042066 ~ 6050725 (-)
XLOC_030800 NA coding upstream 542241 6198080 ~ 6198325 (-)
XLOC_030801 NA coding upstream 655654 6311493 ~ 6312518 (-)
XLOC_030789 BX511196.1 non-coding downstream 671908 4942598 ~ 4942712 (-)
XLOC_030787 NA non-coding downstream 707010 4864870 ~ 4907610 (-)
XLOC_030804 NA non-coding upstream 815186 6471025 ~ 6472754 (-)
XLOC_030806 NA non-coding upstream 855475 6511314 ~ 6511839 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location