XLOC_030817 (pdlim5a)


Basic Information

Item Value
gene id XLOC_030817
gene name pdlim5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 7722017 ~ 7844265 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059955
CAGAGCTTTAGACTTGTTTCACGGAGTTTTGTTTTCCGTTTTGGGAAAAGTGCTGCTTTCTAAAGGACGTTCTGTGAGGAGTCTCTAAGTGTGTGTTTGGCAGCCTCTGCGGTGTGTTTTATATCAGACAGCTATGAGCGGTAAATACAGTGTGGTGTTACAGGGTCCGGCCCCGTGGGGGTTCAGACTGCAGGGGGGGAAAGACTTCAACATGCCTCTCTCCATTTCACGGCTGACGGATGCCGGAAAGGCTGCTAAAGCAGGAGTTGCAGTGGGAGATCTGGTGCTGTCCATCGACGGCATCAGCACTGACGGCATGAACCATCTGGAGGCCCAGAACAAGATTAAAGCCAGCTCAGACAAACTCAACCTTTCTTTGCAGAAAGCTTCAAGTCTGCCAAAACCAGATGTGGCACCAAAGGATGATTGTGTGGAAATCATCAAACCTGTTCCCATGACAACCTCCattccattctcctctgacatcacaAACTCCACCCACATCACGTCATCCTCCAATAGGAGCGCTCGTCCATTTGGAGGGGCGGGGTCACCACCCATAGCCTTCATTCCCTCCACTGCATCTGCTTTTGCACCCGCCTCCACAGCTCAATACCCTAATCCACTGTCTCCGCCCACTGATGGCTCACCAAATCATCAGCCGACGGTGCCCCGCCCATCAGTCTATAACACACCCATCAATCTTTACTCTGATGAAAATGCCTGTGAGGTTGCCATGGGCCAGAGGCGGGGCCTGCTGGAAAGCCAGGGTGAGAGCTGTCAGCTGAATGGACTTCCCCGTGTGCCAATCACAGAGACAGACATTGAGTTTTATCATGTCCCGACTCATGGTGACGCCAGCAGGAAACGCATCATGGAGGACACCGAGGACTGGCGCCCCAGGACGGGAACATCACAGTCCCGCTCCTTCCGCATCCTCGCTCAAATCACCGGCACTGAATCTGAACTCGATCGCGCTCAGGAGGCTGAAGCAGCAAAGAAAACCACAAAtgaGGATGTGGATGATTGTCAACCCTCTGCTCACATCACTTGTCCTGTTAAAACCATGATTAAAGCTCCAGCAACACCTGTCAGAAACAGCGCAGGCTTCATTACTCCCACATTTGGTGTTGTGAGCAGCAGTACACCTCTAGGCCCCGCCCTGGATCGGCCCATGCCCCGCCCACACCCTAAAGACGAAGCCTCTTTGGTTCAGCGGGCAGAACACATTCCTGCTGGAACTCGCACTCCTATGTGTGCTCACTGCGACATGGTGATCAGGGGTCCATTTCTGGTGGCGATGGGTAAATCGTGGCACCCGGAGGAGTTCACCTGCGCTCACTGCAGTGTTTCTCTGAGCGAGCTTGGCTTTGTGGAGGAACAGGGCTCCGTTTACTGCCAGCACTGCTATGAAGAGTTCTTTGCTCCGACCTGCTCACGCTGCCATCACAAGATCCTGGGGGAAGTGATCAATGCACTCAAGCAGACGTGGCACGTGTATTGCTTCCTGTGCGCTTCCTGTCAGCAACCCATCAGAAATGATACGTTTCACCTGGAGGATGGAGAGCCGTACTGTGAGAGAGACTTTTACAGTCTGTTTGGGACGGGTTGCCGTGGCTGTGATTTCCCAATAGAAGCGGGAGACAAGTTTCTAGAGGCCCTGGGCGGCACCTGGCACGACACCTGCTTCGTGTgcacaGTGTGCAGTGTCAGTCTGGAGGGTCAGACCTTCTTCTCCAAAAAGGGCAAACCGCTTTGCAAGAAACACGCTCACGCTCTCAAAATATAGCATAACTTTTTGAAGAACAAGCAAAAAACGTAGAAATATTTACCACCAAACACAGTAAATGCCACATTCTCTCACATTGATCTGTTGAATCGCActttatgctgagttcagactgcatgattttcaaagtagtcgtgtcacagatgtttttacactgcatgactatctgagcTAGTgcttcgtcgctgctttgttcacACGGCAAGATGGAACAGCAACAGGGGGGTTCACACTGCATACAATAGGAACAattgccgacaactttgtccaaactacatctcgcagccaaaaacacgtagtatatcttttgttattaactacataatgggaaagaagcctttaatggggtagaaaatgtacatgtttgctcacctggttTTTGAAGGGAATTAACAATTTCCCCTCcacctttttcttttttgaccgGGTTGTGGTGTTGCTAACATGATGCCTCAAACAGACACGGGCGCTCATGCCATATTTAAACTAGTTTTGCCTCCGtttttgggtccaaataaactgaaaacgaGCAGTTTTAACTTCTCATTCAACCtctcgctggcctgcaggtaAACACACTCAaggggcgcctgcaggattttattccaaggtatgcacaaatccagcaccgccCCGCCCCCTTCCGATGGctgttatttcagtattcaaacttTAAACAACGATTgcattaagtaaaataaaaacaaatattgttgtTATAATTTAGCAAGATTATGctctttatttttgtatatttatcattttatttttgttatttataatattttattgtcttcataattaaagctatagactgattcctgcttgacattttagaaaatattttgcgtAGCCACCCagtatatattaaagatcacagacaaaaaaaaaacaacaacacagaaacatgttacatggccCAAACAAAATGTCCACCTTATATTAAACTGAATTGTAAAAGAAAATGGAGAAAATTGCttatttgatttttataaaacatttatttttgtttgttgttttttgtttttttttagtaaaaacaataccgacatttaagaatccatatttattttatttattcattaatttgacttgtttattgttgcatatataggctataatttaaatcatacaacagtggacagctacagtgcc
>TCONS_00059956
CTATGAGCGGTAAATACAGTGTGGTGTTACAGGGTCCGGCCCCGTGGGGGTTCAGACTGCAGGGGGGGAAAGACTTCAACATGCCTCTCTCCATTTCACGGCTGACGGATGCCGGAAAGGCTGCTAAAGCAGGAGTTGCAGTGGGAGATCTGGTGCTGTCCATCGACGGCATCAGCACTGACGGCATGAACCATCTGGAGGCCCAGAACAAGATTAAAGCCAGCTCAGACAAACTCAACCTTTCTTTGCAGAAAGCTTCAAGTCTGCCAAAACCAGATGTGGCACCAAAGGATGATTGTGTGGAAATCATCAAACCTGTTCCCATGACAACCTCCattccattctcctctgacatcacaAACTCCACCCACATCACGTCATCCTCCAATAGGAGCGCTCGTCCATTTGGAGGGGCGGGGTCACCACCCATAGCCTTCATTCCCTCCACTGCATCTGCTTTTGCACCCGCCTCCACAGCTCAATACCCTAATCCACTGTCTCCGCCCACTGATGGCTCACCAAATCATCAGCCGACGGTGCCCCGCCCATCAGTCTATAACACACCCATCAATCTTTACTCTGATGAAAATGCCTGTGAGGTTGCCATGGGCCAGAGGCGGGGCCTGCTGGAAAGCCAGGGTGAGAGCTGTCAGCTGAATGGACTTCCCCGTGTGCCAATCACAGAGACAGACATTGAGTTTTATCATGTCCCGACTCATGGTGACGCCAGCAGGAAACGCATCATGGAGGACACCGAGGACTGGCGCCCCAGGACGGGAACATCACAGTCCCGCTCCTTCCGCATCCTCGCTCAAATCACCGGCACTGAATCTGAACTCGATCGCGCTCAGGAGGCTGAAGCAGCAAAGAAAACCACAAAtgaGGATGTGGATGATTGTCAACCCTCTGCTCACATCACTTGTCCTGTTAAAACCATGATTAAAGCTCCAGCAACACCTGTCAGAAACAGCGCAGGCTTCATTACTCCCACATTTGGTGTTGTGAGCAGCAGTACACCTCTAGGCCCCGCCCTGGATCGGCCCATGCCCCGCCCACACCCTAAAGACGAAGCCTCTTTGGTTCAGCGGGCAGAACACATTCCTGCTGGAACTCGCACTCCTATGTGTGCTCACTGCGACATGGTGATCAGGGGTCCATTTCTGGTGGCGATGGGTAAATCGTGGCACCCGGAGGAGTTCACCTGCGCTCACTGCAGTGTTTCTCTGAGCGAGCTTGGCTTTGTGGAGGAACAGGGCTCCGTTTACTGCCAGCACTGCTATGAAGAGTTCTTTGCTCCGACCTGCTCACGCTGCCATCACAAGATCCTGGGGGAAGTGATCAATGCACTCAAGCAGACGTGGCACGTGTATTGCTTCCTGTGCGCTTCCTGTCAGCAACCCATCAGAAATGATACGTTTCACCTGGAGGATGGAGAGCCGTACTGTGAGAGAGACTTTTACAGTCTGTTTGGGACGGGTTGCCGTGGCTGTGATTTCCCAATAGAAGCGGGAGACAAGTTTCTAGAGGCCCTGGGCGGCACCTGGCACGACACCTGCTTCGTGTgcacaGTGTGCAGTGTCAGTCTGGAGGGTCAGACCTTCTTCTCCAAAAAGGGCAAACCGCTTTGCAAGAAACACGCTCACGCTCTCAAAATATAGC
>TCONS_00059957
GCGGAGAGTCCATCACCATCACACAGCCGCGCAACTGAAACACACGCGCCTCATCCGACAGaccttctcacacacacaaacacagGACGTTCTGTGAGGAGTCTCTAAGTGTGTGTTTGGCAGCCTCTGCGGTGTGTTTTATATCAGACAGCTATGAGCGGTAAATACAGTGTGGTGTTACAGGGTCCGGCCCCGTGGGGGTTCAGACTGCAGGGGGGGAAAGACTTCAACATGCCTCTCTCCATTTCACGGCTGACGGATGCCGGAAAGGCTGCTAAAGCAGGAGTTGCAGTGGGAGATCTGGTGCTGTCCATCGACGGCATCAGCACTGACGGCATGAACCATCTGGAGGCCCAGAACAAGATTAAAGCCAGCTCAGACAAACTCAACCTTTCTTTGCAGAAAGCTTCAAGTCTGCCAAAACCAGATGTGGCACCAAAGGATGATTGTGTGGAAATCATCAAACCTGTTCCCATGACAACCTCCattccattctcctctgacatcacaAACTCCACCCACATCACGTCATCCTCCAATAGGAGCGCTCGTCCATTTGGAGGGGCGGGGTCACCACCCATAGCCTTCATTCCCTCCACTGCATCTGCTTTTGCACCCGCCTCCACAGCTCAATACCCTAATCCACTGTCTCCGCCCACTGATGGCTCACCAAATCATCAGCCGACGGTGCCCCGCCCATCAGTCTATAACACACCCATCAATCTTTACTCTGATGAAAATGCCTGTGAGGTTGCCATGGGCCAGAGGCGGGGCCTGCTGGAAAGCCAGGGTGAGAGCTGTCAGCTGAATGGACTTCCCCGTGTGCCAATCACAGAGACAGACATTGAGTTTTATCATGTCCCGACTCATGGTGACGCCAGCAGGAAACGCATCATGGAGGACACCGAGGACTGGCGCCCCAGGACGGGAACATCACAGTCCCGCTCCTTCCGCATCCTCGCTCAAATCACCGGCACTGAATCTGAACTCGATCGCGCTCAGGAGGCTGAAGCAGCAAAGAAAACCACAAAGGTAGTGAAGATTAATCCTAAGATCGGACCCAGATATCATAAACTCAGAGACTGGCACCACGGAGTGTCCGCTCGAACCCTTAACGTCCTCAGCCTGGtgtagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatctgaAGAGAGATTGTGAAAAGTGTGACTGAAGTTTTATCAGTAGCAGAAGGGTCAGAATGATCACAAAGCACAGCTAATATTTCAGTTTCATTTCAACTTTCAGGTTAATTCATTGTtaattattaacataattaattttaatacattatttttcaTATTCGGTACATTATTGCTGCACCTCTATTCTCAGTCCGTCTAAATTCACGTTCTGCTTTCTACAAAAAGCCACGCCTTCCCAACAGCCCagagtgctctgattggccaaACACCTCAAGAGTGTGGGTAATGTAACACCCCTTTTCAtaattaccatatatatatatatattagggatgtaacggtatcagaatttcacggtacggtaatacctcggtatgaatgtcacggtacggtaattattgaatcatttacagaaaaaaacaaaacttatgaaaatactccaaaaaagtgccaaaagtgtcaatgacatacaaattagccatctatctgtaagctttgaaacaggaacttcaattttaataacaaaaaaatattaaatcatgtaaaaaaattaagtttcaatttagtattgttgaaaactcatcacattcaacatttaatcactcactcacttagatagagatgggtttaaaggaaaattatcatataaatataatctggtaaaagctggtatctctgggtatttacaatgtcccctgcaacagaaaaccctctcatttgggactgaggtttctgggacaagagagatatgacttggcccaggttgacagcagtggggtaacgttgtgcattgtctttcccccacttaaGAGGaaaaaccatgagtgagatagagatctcatgtctgcatcaatctgaacagtgtgctgtgtttctgcagtccccatgactgattagtcgtattccccaacttgcaggcacgtgcacacacagggctcaacctgtgcagtgcacatgccctttttagtcttggatagaaagttcccttccaaaatgatcaaaagtgcccccgcgacgcgacataccctccgtccccgctttacagtacgcgcgtgacaacacagctgatcagaacgcgcgtgacaacacagctgataagaacgcgcgtgacaacacagctgataagaactcgcgcgacaacaccgctattcagtacgcgcgcggcgacaacacccgctttagagttttcccactctttttgatgcccgcttctagcagcacactccatttccgcattactggatctgtagcgacaacagaccgcaagggattatggccaagcctgggctgatgggaattgtagtttccgctacctcccgttcgcttcattcgcctgagcaaattttctcagaagacctatagttttaccgagtcatgcgactacggtaatatcgaaaaaaattaatattgcggtatgacggtatttacaataccgttacatccctaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtagttgaagtcagatttattagattATTGATGTAATCAGCTTTACAAAAGATGCACATTATTGAATTACAATAAATTTAGTCACATTCAATTATAAGTTATTATATGCAGcagacatagttaacctgcaattTTATAGCATATACTGCAGGTGATGTCTATGTGCACTTGTTTAATGAAGCGTATGTCAGTGTTTAGAGCAGTGTTTTTTGTTCTCTTTTGCGACAGATTATGAGCTTTAACTGCACATCTTttagatgcacacacacaaatgaaacattattactgaataaaggaaaagaaaacgATGCAAAGCATCACATGACCTCTTTAAAGTGTAGATTTTAGGGAGTGTGTGAAGACTCAGTGTGCATACAACAGCAAATCTTAAACTGTGCTTTTgtgaatttattgatttatttgtcttAGTTGCACATCAGTTTTGCCTTACACGTGTGGCTCGAGTGGATCATACATAGCTTCTGTGGTGTTTCAACATTTGGCTACAAAAGCTACAACATTAGTCAATAAATAATTTCACATCGTTCATCCTCACATCATCAGTTACAACAAATGAAACTCAGTAATGCAGCATTTACAGTAATGCGCTTCTGGACGTCTACATCAATGTTCAGCAGTGAAAAAGACATATATTTCTGTGAACGTACTTAATAGTTTTAGTTCTTGACTAGTGTTTTTTGGACTGAAATGTGTTCAGTTGCATGGCTTTAACaagttttaaatgcaattttccGACACAACTCTCTTGTATACATGTTTacgcattattattatatttttaaaaagtgtgtttgttgtttttttggtgaTGTTTTTGTGATAAATGTGATGTTTATCTCTCATAGATGCTGTTCAACAGGTTTTAAACCCAGAGCAGTCTtttaaacactgatttattttattctatgcTTGAAAACGATTTATTTTCACCTATTATTCTATTCTTTCCTTGATTAGTTTTGCTCATATAGCCAGATGAGAATAAAGTGGCCTGTATTTTCTGATGAGTTTTTACTGTGTATTTTCTCATTCTTCgtgtcagtgttttttttatttatgtttgttttcttGTATACAGGCACAAACGGCATATTACAGACATATATGCAACTCTTTTTTTTATGAACACAGACATGACTTTGACTTTAGAGACCAGTGTGCACAGGagtatgtattaataataatcacaCTGACAGATTTTATGAGGATCCTTCAAGGATTCAGCTGGTGTAATGTTCATGTTTCACCACTAGAGAGCAGACTGAGTTTCTGCTTCAGATAATGAGCAGCAGTCACAGGCTTGTTATATTAAACAGCTGACTATGGAATCAGttaagtctcaaaagaaattgacgcaaaagacacgatttacacattttcaagaaaacagctgctttaaaacttcaaatggtataaccttacagtttt
>TCONS_00059958
CAGAGCTTTAGACTTGTTTCACGGAGTTTTGTTTTCCGTTTTGGGAAAAGTGCTGCTTTCTAAAGGACGTTCTGTGAGGAGTCTCTAAGTGTGTGTTTGGCAGCCTCTGCGGTGTGTTTTATATCAGACAGCTATGAGCGGTAAATACAGTGTGGTGTTACAGGGTCCGGCCCCGTGGGGGTTCAGACTGCAGGGGGGGAAAGACTTCAACATGCCTCTCTCCATTTCACGGCTGACGGATGCCGGAAAGGCTGCTAAAGCAGGAGTTGCAGTGGGAGATCTGGTGCTGTCCATCGACGGCATCAGCACTGACGGCATGAACCATCTGGAGGCCCAGAACAAGATTAAAGCCAGCTCAGACAAACTCAACCTTTCTTTGCAGAAAGCTTCAAGTCTGCCAAAACCAGATGTGGCACCAAAGGATGATTGTGTGGAAATCATCAAACCTGTTCCCATGACAACCTCCattccattctcctctgacatcacaAACTCCACCCACATCACGTCATCCTCCAATAGGAGCGCTCGTCCATTTGGAGGGGCGGGGTCACCACCCATAGCCTTCATTCCCTCCACTGCATCTGCTTTTGCACCCGCCTCCACAGCTCAATACCCTAATCCACTGTCTCCGCCCACTGATGGCTCACCAAATCATCAGCCGACGGTGCCCCGCCCATCAGTCTATAACACACCCATCAATCTTTACTCTGATGAAAATGCCTGTGAGGTTGCCATGGGCCAGAGGCGGGGCCTGCTGGAAAGCCAGGGTGAGAGCTGTCAGCTGAATGGAAAGCCTGCGATGAACAGACTTCCCCGTGTGCCAATCACAGAGACAGACATTGAGTTTTATCATGTCCCGACTCATGGTGACGCCAGCAGGAAACGCATCATGGAGGACACCGAGGACTGGCGCCCCAGGACGGGAACATCACAGTCCCGCTCCTTCCGCATCCTCGCTCAAATCACCGGCACTGAATCTGAACTCGATCGCGCTCAGGAGGCTGAAGCAGCAAAGAAAACCACAAAGGTAGTGAAGATTAATCCTAAGATCGGACCCAGATATCATAAACTCAGAGACTGGCACCACGGAGTGTCCGCTCGAACCCTTAACGTCCTCAGCCTGGtgtagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatctgaAGAGAGATTGTGAAAAGTGTGACTGAAGTTTTATCAGTAGCAGAAGGGTCAGAATGATCACAAAGCACAGCTAATATTTCAGTTTCATTTCAACTTTCAGGTTAATTCATTGTtaattattaacataattaattttaatacattatttttcaTATTCGGTACATTATTGCTGCACCTCTATTCTCAGTCCGTCTAAATTCACGTTCTGCTTTCTACAAAAAGCCACGCCTTCCCAACAGCCCagagtgctctgattggccaaACACCTCAAGAGTGTGGGTAATGTAACACCCCTTTTCAtaattaccatatatatatatatattagggatgtaacggtatcagaatttcacggtacggtaatacctcggtatgaatgtcacggtacggtaattattgaatcatttacagaaaaaaacaaaacttatgaaaatactccaaaaaagtgccaaaagtgtcaatgacatacaaattagccatctatctgtaagctttgaaacaggaacttcaattttaataacaaaaaaatattaaatcatgtaaaaaaattaagtttcaatttagtattgttgaaaactcatcacattcaacatttaatcactcactcacttagatagagatgggtttaaaggaaaattatcatataaatataatctggtaaaagctggtatctctgggtatttacaatgtcccctgcaacagaaaaccctctcatttgggactgaggtttctgggacaagagagatatgacttggcccaggttgacagcagtggggtaacgttgtgcattgtctttcccccacttaaGAGGaaaaaccatgagtgagatagagatctcatgtctgcatcaatctgaacagtgtgctgtgtttctgcagtccccatgactgattagtcgtattccccaacttgcaggcacgtgcacacacagggctcaacctgtgcagtgcacatgccctttttagtcttggatagaaagttcccttccaaaatgatcaaaagtgcccccgcgacgcgacataccctccgtccccgctttacagtacgcgcgtgacaacacagctgatcagaacgcgcgtgacaacacagctgataagaacgcgcgtgacaacacagctgataagaactcgcgcgacaacaccgctattcagtacgcgcgcggcgacaacacccgctttagagttttcccactctttttgatgcccgcttctagcagcacactccatttccgcattactggatctgtagcgacaacagaccgcaagggattatggccaagcctgggctgatgggaattgtagtttccgctacctcccgttcgcttcattcgcctgagcaaattttctcagaagacctatagttttaccgagtcatgcgactacggtaatatcgaaaaaaattaatattgcggtatgacggtatttacaataccgttacatccctaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtagttgaagtcagatttattagattATTGATGTAATCAGCTTTACAAAAGATGCACATTATTGAATTACAATAAATTTAGTCACATTCAATTATAAGTTATTATATGCAGcagacatagttaacctgcaattTTATAGCATATACTGCAGGTGATGTCTATGTGCACTTGTTTAATGAAGCGTATGTCAGTGTTTAGAGCAGTGTTTTTTGTTCTCTTTTGCGACAGATTATGAGCTTTAACTGCACATCTTttagatgcacacacacaaatgaaacattattactgaataaaggaaaagaaaacgATGCAAAGCATCACATGACCTCTTTAAAGTGTAGATTTTAGGGAGTGTGTGAAGACTCAGTGTGCATACAACAGCAAATCTTAAACTGTGCTTTTgtgaatttattgatttatttgtcttAGTTGCACATCAGTTTTGCCTTACACGTGTGGCTCGAGTGGATCATACATAGCTTCTGTGGTGTTTCAACATTTGGCTACAAAAGCTACAACATTAGTCAATAAATAATTTCACATCGTTCATCCTCACATCATCAGTTACAACAAATGAAACTCAGTAATGCAGCATTTACAGTAATGCGCTTCTGGACGTCTACATCAATGTTCAGCAGTGAAAAAGACATATATTTCTGTGAACGTACTTAATAGTTTTAGTTCTTGACTAGTGTTTTTTGGACTGAAATGTGTTCAGTTGCATGGCTTTAACaagttttaaatgcaattttccGACACAACTCTCTTGTATACATGTTTacgcattattattatatttttaaaaagtgtgtttgttgtttttttggtgaTGTTTTTGTGATAAATGTGATGTTTATCTCTCATAGATGCTGTTCAACAGGTTTTAAACCCAGAGCAGTCTtttaaacactgatttattttattctatgcTTGAAAACGATTTATTTTCACCTATTATTCTATTCTTTCCTTGATTAGTTTTGCTCATATAGCCAGATGAGAATAAAGTGGCCTGTATTTTCTG
>TCONS_00059959
GTCAACGGCGGAGAGTCCATCACCATCACACAGCCGCGCAACTGAAACACACGCGCCTCATCCGACAGaccttctcacacacacaaacacagGACGTTCTGTGAGGAGTCTCTAAGTGTGTGTTTGGCAGCCTCTGCGGTGTGTTTTATATCAGACAGCTATGAGCGGTAAATACAGTGTGGTGTTACAGGGTCCGGCCCCGTGGGGGTTCAGACTGCAGGGGGGGAAAGACTTCAACATGCCTCTCTCCATTTCACGGCTGACGGATGCCGGAAAGGCTGCTAAAGCAGGAGTTGCAGTGGGAGATCTGGTGCTGTCCATCGACGGCATCAGCACTGACGGCATGAACCATCTGGAGGCCCAGAACAAGATTAAAGCCAGCTCAGACAAACTCAACCTTTCTTTGCAGAAAGCTTCAAGTCTGCCAAAACCAGATGTGGCACCAAAGGATGATTGTGTGGAAATCATCAAACCTGTTCCCATGACAACCTCCattccattctcctctgacatcacaAACTCCACCCACATCACGTCATCCTCCAA

Function

symbol description
pdlim5a Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Is expressed in several structures, including cephalic musculature; digestive system; dorsal aorta; nervous system; and notochord. Orthologous to human PDLIM5 (PDZ and LIM domain 5).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0001725 stress fiber cellular_component
GO:0005912 adherens junction cellular_component
GO:0031941 filamentous actin cellular_component
GO:0030018 Z disc cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003779 actin binding molecular_function
GO:0051371 muscle alpha-actinin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-401 Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Is expressed in several structures, including cephalic musculature; digestive system; dorsal aorta; nervous system; and notochord. Orthologous to human PDLIM5 (PDZ and LIM domain 5).

Ensembl:

ensembl_id ENSDARG00000101777

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059955 False 2944 mRNA 0.46 14 7722017 7834582
TCONS_00059956 False 1659 mRNA 0.54 12 7723211 7829657
TCONS_00059957 False 4208 mRNA 0.41 8 7743837 7844258
TCONS_00059958 False 3781 mRNA 0.42 9 7744262 7834582
TCONS_00059959 True 546 mRNA 0.52 5 7771148 7844265

Neighbor

gene id symbol gene type direction distance location
XLOC_030815 bmpr1ba coding downstream 9793 7488064 ~ 7712224 (-)
XLOC_030816 CABZ01069879.1 coding downstream 89198 7632695 ~ 7632819 (-)
XLOC_030814 CU856253.1 coding downstream 290494 7431425 ~ 7431523 (-)
XLOC_030813 NA coding downstream 344612 7376982 ~ 7377405 (-)
XLOC_030812 CABZ01087502.1 coding downstream 522019 7198757 ~ 7199998 (-)
XLOC_030819 opn4xb coding upstream 9198 7853463 ~ 7897420 (-)
XLOC_030820 EGFLAM coding upstream 75613 7919878 ~ 7969760 (-)
XLOC_030821 FP016143.1 coding upstream 128494 7972759 ~ 7972879 (-)
XLOC_030822 nipbla coding upstream 161646 8005911 ~ 8096232 (-)
XLOC_030823 slc1a3a coding upstream 267085 8111350 ~ 8171625 (-)
XLOC_030811 CABZ01087503.1 non-coding downstream 573610 7148291 ~ 7148407 (-)
XLOC_030810 CABZ01041961.1 non-coding downstream 792869 6929034 ~ 6929148 (-)
XLOC_030824 NA non-coding upstream 473453 8317718 ~ 8325015 (-)
XLOC_030826 NA non-coding upstream 565196 8409461 ~ 8416833 (-)
XLOC_030830 BX897662.1 non-coding upstream 791003 8635268 ~ 8635392 (-)
XLOC_030831 BX897662.3 non-coding upstream 793539 8637804 ~ 8640000 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location