XLOC_030819 (opn4xb)


Basic Information

Item Value
gene id XLOC_030819
gene name opn4xb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 7853463 ~ 7897420 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059960
ATGGAGCCACAGAGGCAGATTTACAAAAGACTGGACGTCCCGGATCATGTGCATTACATCATCGCCTTCCTCATCCTCATCATCGGCACTTTGGGAGTTTCTGGAAACGCTCTGGTCATGTTCGCCTTCTACAGtaacaAAAAGTTGCGGAGCCTGCCTAATTATTTCATCATGAACCTGGCGGTTAGTGATTTCCTCATGGCCATCACACAGTCTCCAATCTTCTTCATCAACTGCCTGTATAAGGAGTGGATGTTTGGAGAACTGGgatgTAAAATCTATGCATTCTGTGGTGCGCTGTTCGGCATCACCTCGATGATAAACCTGTTGGCCATTTCTATTGATCGCTACCTGGTTATCACCAAACCACTGCAGACCATCCAGTGGAACTCCAAGCGCAGAACCGGTCTGGCCATCCTTTGCATCTGGCTCTACTCGCTGGCCTGGAGTCTGGctcctctgattggctggaGTTCCTACATCCCTGAAGGTCTGATGACGTCTTGCACATGGGACTACGTCTCTCCATCTCCTGCCAACAAGAGCTACACCATGATGCTCTGCTGTTTCGTCTTCTTCATCCCACTGAGCATCATCCTCTACTGTTACCTGTTCATGTTCCTCTCCGTGCGGCAGGCCAGCAGAGATCTGGAAATGCTGAGCTCTCAGAAGTCCAGCTTTGTGAAGCAGCAGTCCATGAGGAGTGAATGGAAACTGGCTAAAATAGCGGCTGTGGTCATTGTGGTGTATGTTTTGTCCTGGGCTCCATATGCCTGCGTGACCCTCGTGGCCTGGGCAGGGCATCAAGACGTTCTCACACCCTACTCAAAAACACTGCCAGCCGTCCTCGCCAAATCATCAGCCATCTACAACCCCTTTATATACGCCATAATTCACAACAAATACAGagccaCATTAGCAGAGAAGGTGCCAGGTCTGTCATGTTTGTCTCGCTCTCAGAAAGATGGTCTGTCCTCCTCCACCAACAGCGATGCCTCCGCTCAGGACTCCAGCGTCAGCAGACAGTCTTCTGTGTCCAAGAACAGACTCCACAGCACTATGGTAAAGGGAGAAGTGGAACTGGACCTGATGGAGAACAGGCCAaaattgtcatttaaaggcttttcTAGACGGCGGCTCCTCAAATGCTCCTCGCTGCTTATAGAGAAGcctCCAGTGCAGATGAAGGAGTCTCTCAGTCTCTGTGAGCGAGATCTGGTCTCGGGCTCCTTCTCCATCGCAGCCGCACCGATGGTCATGTCCAGCAAGCAGAAGAGCAGGAGTGCAGATCTGATCCACAGCTCAGGAGACTCACAAAACCCCATGCAGAAGCTTCTGTCCATCAGTCAACTCCAGCAGATTCATGAAGGAGAGGCCAGCTGA
>TCONS_00059961
GAGATCATGAGTGGCTCTGCGCTCAGCTCTGACTTGTTGAactcttcttcttcatcttattattcttcttcttcagtGTTTGTTGCTGTATCTTCAGTTTGGTGATGGAGCCACAGAGGCAGATTTACAAAAGACTGGACGTCCCGGATCATGTGCATTACATCATCGCCTTCCTCATCCTCATCATCGGCACTTTGGGAGTTTCTGGAAACGCTCTGGTCATGTTCGCCTTCTACAGtaacaAAAAGTTGCGGAGCCTGCCTAATTATTTCATCATGAACCTGGCGGTTAGTGATTTCCTCATGGCCATCACACAGTCTCCAATCTTCTTCATCAACTGCCTGTATAAGGAGTGGATGTTTGGAGAACTGGgatgTAAAATCTATGCATTCTGTGGTGCGCTGTTCGGCATCACCTCGATGATAAACCTGTTGGCCATTTCTATTGATCGCTACCTGGTTATCACCAAACCACTGCAGACCATCCAGTGGAACTCCAAGCGCAGAACCGGTCTGGCCATCCTTTGCATCTGGCTCTACTCGCTGGCCTGGAGTCTGGctcctctgattggctggaGTTCCTACATCCCTGAAGGTCTGATGACGTCTTGCACATGGGACTACGTCTCTCCATCTCCTGCCAACAAGAGCTACACCATGATGCTCTGCTGTTTCGTCTTCTTCATCCCACTGAGCATCATCCTCTACTGTTACCTGTTCATGTTCCTCTCCGTGCGGCAGGCCAGCAGAGATCTGGAAATGCTGAGCTCTCAGAAGTCCAGCTTTGTGAAGCAGCAGTCCATGAGGAGTGAATGGAAACTGGCTAAAATAGCGGCTGTGGTCATTGTGGTGTATGTTTTGTCCTGGGCTCCATATGCCTGCGTGACCCTCGTGGCCTGGGCAGGGCATCAAGACGTTCTCACACCCTACTCAAAAACACTGCCAGCCGTCCTCGCCAAATCATCAGCCATCTACAACCCCTTTATATACGCCATAATTCACAACAAATACAGagccaCATTAGCAGAGAAGGTGCCAGGTCTGTCATGTTTGTCTCGCTCTCAGAAAGATGGTCTGTCCTCCTCCACCAACAGCGATGCCTCCGCTCAGGACTCCAGCGTCAGCAGACAGTCTTCTGTGTCCAAGAACAGACTCCACAGCACTATGGTAAAGGGAGAAGTGGAACTGGACCTGATGGAGAACAGGCCAaaattgtcatttaaaggcttttcTAGACGGCGGCTCCTCAAATGCTCCTCGCTGCTTATAGAGAAGGTGAGGTTCAGTTAAAAACATAATTTGCTTTCCACTTATAAATTGGGAGGTTCCAAGATGGCGGCTTGAAGGAAGGTTGTGTGTAGTAAAGCGGTAGAGTCACGTTGtcgtattttatttaaaaaatttcagTAGGTAACATTTTTACATGCGCAAACTCAGTATTCTACAGTTTGAGCATAGATgactactttcttttttcttttcttttttttaatcagaatatgcaaaaaggtacataaattgcAACCCGGgctctgcggaccgcgatttacgtcccgggaggtacgtattcgagcggtttttgttttcgcggattcgcgagaggccgctgtacGCGCTTTTTTGTGTCTTTGCCGtttgcgcccgcgccgttctcacgcgaaaagccgccggatcggccgactcggccgccctcctcttcctcctcctccttccttaaacccgagcggcggttcgcaaaagccgtccagaaaaaaaaaaagcaaaagccctcgtcttcgatttcgaccgcgttttcggatcccgccacgttctcgcccttatttttcggattctgtttttcatcttacctgatttccggaaccgctgttccccggactcgatccctgtcgtcgtccccgcggtcggctcctcctcctcctccggggcctccgctccgccgacgcaacgctgtgagctaagcggacaaactggttacaccgggaaagccctccactcggaggcgagccgtc

Function

symbol description
opn4xb Enables photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; heart; integument; liver; and visual system.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-526 Enables photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; heart; integument; liver; and visual system.

Ensembl:

ensembl_id ENSDARG00000103259

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059960 False 1383 mRNA 0.51 9 7853463 7897316
TCONS_00059961 True 2008 mRNA 0.50 8 7861125 7897420

Neighbor

gene id symbol gene type direction distance location
XLOC_030817 pdlim5a coding downstream 9198 7722017 ~ 7844265 (-)
XLOC_030818 NA coding downstream 128188 7725064 ~ 7725275 (-)
XLOC_030815 bmpr1ba coding downstream 141239 7488064 ~ 7712224 (-)
XLOC_030816 CABZ01069879.1 coding downstream 220644 7632695 ~ 7632819 (-)
XLOC_030814 CU856253.1 coding downstream 421940 7431425 ~ 7431523 (-)
XLOC_030820 EGFLAM coding upstream 22458 7919878 ~ 7969760 (-)
XLOC_030821 FP016143.1 coding upstream 75339 7972759 ~ 7972879 (-)
XLOC_030822 nipbla coding upstream 108491 8005911 ~ 8096232 (-)
XLOC_030823 slc1a3a coding upstream 213930 8111350 ~ 8171625 (-)
XLOC_030824 NA coding upstream 420298 8317718 ~ 8325015 (-)
XLOC_030813 NA non-coding downstream 476058 7376982 ~ 7377405 (-)
XLOC_030811 CABZ01087503.1 non-coding downstream 705056 7148291 ~ 7148407 (-)
XLOC_030826 NA non-coding upstream 512041 8409461 ~ 8416833 (-)
XLOC_030830 BX897662.1 non-coding upstream 737848 8635268 ~ 8635392 (-)
XLOC_030831 BX897662.3 non-coding upstream 740384 8637804 ~ 8640000 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01055620_00001900_00006798 NA coding CI01055620 null 1866 ~ 6798 (-)