XLOC_030823 (slc1a3a)


Basic Information

Item Value
gene id XLOC_030823
gene name slc1a3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 8111350 ~ 8171625 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059966
CACTTCTCTCTGCTCCCTCGGCGTGGAGGATCTTCCCTGAACCAAATCCTGTATTTTTCTGATACCCGTGTGTTGCTGTGTGCAGTGTCGGCAGTGTGGCGTCTCCTCCAGACATGACTCAGAGTAACGGGGAGACGCgtctgcagcgcagcagagtccAGCAGCTGCGGGATGGCCTGACCGAGCGCTCGCTGAGGGCCAAAAACACTGTCCAGAACATCTCCAGCAACGACGTCAAGGGCTTCTTCATGAGGAACGCTTTCGTCATCCTCACCGTCGCTGCCGTCATCGTGGGAATAATCCTGGGATTCGGACTGCGGCCGTATAAGATGTCGTATCGGGAGGTGAAGTACTTCTCTTTTCCCGGAGAGCTGCTGATGCGGATGCTGCAGATGCTGGTGCTCCCCCTGCTGGTGTCCAGTTTAATCACAGGAATGGCAGCTCTGGACAGTCGAGCTTCAGGGAAGATGGGAGTGAGAGCTGTGGTTtactacaccaccaccaccatcatcgCCGTCTTCATCGGCATCGTCATGGTGCTCATCATCCACCCAGGAAAAGGCTCCAAAGACGAATTCACCAAACACGAGAAAATCGAACAAGTCAGTCCAGCAGACGCCTTCCTCGATCTCATCAGAAACATGTTTCCACCAAATCTGGTGCAAGCTTGTACACAACAGTTTAAGACGCAATATGGCAAGCGAGTGGTCACAGTCAAAGTCCTGGTGAACGACACAGTGTTCAGTCTGAATAACGGCACGCAGGAGCTTAAACGGGAGGAGGTGATCCCGGTGCTGGGGACTGTAAACGGGATAAATGCTCTGGGACTGGTGGTTTTCTCCATGTGTTTTGGCCTGATCATCGGGAACATGAAGGAACAGGGCCAGCCACTGAGGGATTTCTTTGACTGTCTGAACGAGGCCATCATGAGGCTGGTGGCCATTATCATGTGGTACGCTCCGCTGGGTATAATGTTCCTGATTGCTGGAAAGATAGTGGAGATGGACGATCTGTCAGAAATGGGCGGTCAGCTGGGCATGTACACCATTACAGTCATCATTGGCCTGCTGATTCATGCAGTCATCGTACTGCCATTGCTCTACTTCCTTGTGACAAGAAAAAATCCATTCGTATTCATCGCTGGACTTTTGCAAGCCCTGATCACTGCGCTCGGTACCTCCTCCAGTTCTGCCACTCTGCCCATCACCTTTAAGTGTCTAGAGGAAAATAACGGTGTGGATAAGCGTGTGACCCGCTTCGTTCTGCCTGTCGGTGCCACCATAAACATGGATGGCACTGCTCTGTATGAGGCTCTGGCTGCCATTTTCATTGCACAGGTCAATGACATGGAGATGAACTTTGGAGAGATCCTAACCATCAGCATCACTGCAACAGCAGCCAGTATCGGTGCCGCTGGAATCCCTCAAGCTGGCTTGGTTACCATGGTGATTGTGCTGACCTCTGTGGGACTGCCCACTGATGACATCACTCTGATTATCGCTGTTGATTGGTTCCTAGATCGACTCCGCACCACCACTAACGTTTTAGGAGACTCCATTGGCGCTGGCATAGTGGAGCATCTGTCACGTCACGAGCTGCGCTCCATCGACGCGGAGATCGGAAACTCTGTGTTGGAGGAGAACGAGACCAAGAAATCCTACCAGCTCATCTCTCAGGAGAGCGAGAGCGACAATGCCAAGATCCCTGACAGCGAGAGCAAAATGTAACTCCTGTTTCCTGAGGAGTTTCATTTCCTGGAGGTTTTGTACAAACACTAGTGACTTAGTCAGACACTTCTAGTCTGATATTCATctcaagtttttttattattcctcAAAGACATCCAAATGTGTGAAGTCCGAGCTGAGATGGACACGGGCGGTCCACTGTTTTCTTGTAGAGTAAATGGATTAGTTTGGTAAAGATCTGATCGCGTTAGACGTGTTTTTATTAACTCTAGATGTCCAGGTTTGGTGTTATTAATTCAAAGCATGTCGTTGTGGAAACTGTTTGTTAAAAATGATGGCTCTacaaaataaattgattttaaatt
>TCONS_00059967
CCTCCAGACATGACTCAGAGTAACGGGGAGACGCgtctgcagcgcagcagagtccAGCAGCTGCGGGATGGCCTGACCGAGCGCTCGCTGAGGGCCAAAAACACTGTCCAGAACATCTCCAGCAACGACGTCAAGGGCTTCTTCATGAGGAACGCTTTCGTCATCCTCACCGTCGCTGCCGTCATCGTGGGAATAATCCTGGGATTCGGACTGCGGCCGTATAAGATGTCGTATCGGGAGGTGAAGTACTTCTCTTTTCCCGGAGAGCTGCTGATGCGGATGCTGCAGATGCTGGTGCTCCCCCTGCTGGTGTCCAGTTTAATCACAGGAATGGCAGCTCTGGACAGTCGAGCTTCAGGGAAGATGGGAGTGAGAGCTGTGGTTtactacaccaccaccaccatcatcgCCGTCTTCATCGGCATCGTCATGGTGCTCATCATCCACCCAGGAAAAGGCTCCAAAGACGAATTCACCAAACACGAGAAAATCGAACAAGTCAGTCCAGCAGACGCCTTCCTCGATCTCATCAGAAACATGTTTCCACCAAATCTGGTGCAAGCTTGTACACAACAGTTTAAGACGCAATATGGCAAGCGAGTGGTCACAGTCAAAGTCCTGGTGAACGACACAGTGTTCAGTCTGAATAACGGCACGCAGGAGCTTAAACGGGAGGAGGTGATCCCGGTGCTGGGGACTGTAAACGGGATAAATGCTCTGGGACTGGTGGTTTTCTCCATGTGTTTTGGCCTGATCATCGGGAACATGAAGGAACAGGGCCAGCCACTGAGGGATTTCTTTGACTGTCTGAACGAGGCCATCATGAGGCTGGTGGCCATTATCATGTGGTACGCTCCGCTGGGTATAATGTTCCTGATTGCTGGAAAGATAGTGGAGATGGACGATCTGTCAGAAATGGGCGGTCAGCTGGGCATGTACACCATTACAGTCATCATTGGCCTGCTGATTCATGCAGTCATCGTACTGCCATTGCTCTACTTCCTTGTGACAAGAAAAAATCCATTCGTATTCATCGCTGGACTTTTGCAAGCCCTGATCACTGCGCTCGGTACCTCCTCCAGTTCTGCCACTCTGCCCATCACCTTTAAGTGTCTAGAGGAAAATAACGGTGTGGATAAGCGTGTGACCCGCTTCGTTCTGCCTGTCGGTGCCACCATAAACATGGATGGCACTGCTCTGTATGAGGCTCTGGCTGCCATTTTCATTGCACAGGTCAATGACATGGAGATGAACTTTGGAGAGATCCTAACCATCAGCATCACTGCAACAGCAGCCAGTATCGGTGCCGCTGGAATCCCTCAAGCTGGCTTGGTTACCATGGTGATTGTGCTGACCTCTGTGGGACTGCCCACTGATGACATCACTCTGATTATCGCTGTTGATTGGTTCCTAGATCGACTCCGCACCACCACTAACGTTTTAGGAGACTCCATTGGCGCTGGCATAGTGGAGCATCTGTCACGTCACGAGCTGCGCTCCATCGACGCGGAGATCGGAAACTCTGTGTTGGAGGAGAACGAGACCAAGAAATCCTACCAGCTCATCTCTCAGGAGAGCGAGAGCGACAATGCCAAGATCCCTGACAGCGAGAGCAAAATGTAACTCCTGTTTCCTGAGGAGTTTCATTTCCTGGAGGTTT

Function

symbol description
slc1a3a Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including glioblast; liver; nervous system; neural tube; and radial glial cell. Human ortholog(s) of this gene implicated in episodic ataxia type 6. Orthologous to human SLC1A3 (solute carrier family 1 member 3).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2159 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including glioblast; liver; nervous system; neural tube; and radial glial cell. Human ortholog(s) of this gene implicated in episodic ataxia type 6. Orthologous to human SLC1A3 (solute carrier family 1 member 3).

Ensembl:

ensembl_id ENSDARG00000104431

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059966 False 2053 mRNA 0.50 10 8111350 8171625
TCONS_00059967 True 1660 mRNA 0.52 9 8111639 8164439

Neighbor

gene id symbol gene type direction distance location
XLOC_030822 nipbla coding downstream 15118 8005911 ~ 8096232 (-)
XLOC_030821 FP016143.1 coding downstream 138471 7972759 ~ 7972879 (-)
XLOC_030820 EGFLAM coding downstream 141590 7919878 ~ 7969760 (-)
XLOC_030819 opn4xb coding downstream 213930 7853463 ~ 7897420 (-)
XLOC_030817 pdlim5a coding downstream 267085 7722017 ~ 7844265 (-)
XLOC_030824 NA coding upstream 146093 8317718 ~ 8325015 (-)
XLOC_030825 spef2 coding upstream 184022 8355647 ~ 8406192 (-)
XLOC_030826 NA coding upstream 237836 8409461 ~ 8416833 (-)
XLOC_030827 lifra coding upstream 245559 8417184 ~ 8483537 (-)
XLOC_030828 rictora coding upstream 362304 8533929 ~ 8614217 (-)
XLOC_030818 NA non-coding downstream 386075 7725064 ~ 7725275 (-)
XLOC_030816 CABZ01069879.1 non-coding downstream 478531 7632695 ~ 7632819 (-)
XLOC_030814 CU856253.1 non-coding downstream 679827 7431425 ~ 7431523 (-)
XLOC_030813 NA non-coding downstream 733945 7376982 ~ 7377405 (-)
XLOC_030830 BX897662.1 non-coding upstream 463643 8635268 ~ 8635392 (-)
XLOC_030831 BX897662.3 non-coding upstream 466179 8637804 ~ 8640000 (-)
XLOC_030832 NA non-coding upstream 469053 8640678 ~ 8644183 (-)

Expression


Co-expression Network