XLOC_030839 (AL928901.1)


Basic Information

Item Value
gene id XLOC_030839
gene name AL928901.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 8959728 ~ 8963775 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059986
AAAtctttaaagcattttaatagatGAATGAATTCAGGCTGAGATTATTTTGAGTGTTTAGAATAGATGTAAAAGACTTGTGTTTTAGTGAACTGTGTTGTTAATATGTAGTTGTGGAGATGTCTGTTTCCCCTCGAGACACTGACGGAAAGCAGGATTCCTACTTGAAGAGGTATTACAAAACCCTTCCTGAGGAGAAAAGATTGATGATGGAAAAGTCTCTAATGGATGCAGATAATAATGAGCAAGCACACACCATTGGTCTAAATAAGGGTGTTTTCTCAAAAGATCCCAAAAAAGagcacattaaacacagaaaGGCTGAAGATTCTGAAGATAATGATGCCAAAAAGGATAAAAAATCATCCACGTGCACTGTGTTATAACACATCATACACATCACACATCTTACCCATGCATAATTACAGTACCTCTCTTTGCCAGTCAGATACAATTGAAAATGCCATATCTtgtattagcagtattatttgtttattttagattcTGAACATGCTTTTAGAAATGTTCtccttttatataataataagagGTTTTGTggcaatttaatataaaaaaaactaaagctaAGCGGCAACGTCTTTACTCATAAGGCCAGGTTTTATCATTGTTTTGAATGGAAAACGTGAATCTATATTTTGCCCAAttcaatacagcaaaaaaaaaaaaaaaaaatggagacaATATTTGAGTGatacatttaaaacagcatctacAGTGCATTACAACATGGAAATGCAACAGACACACAAAACCACATGGGGTTTACCCATAATGCcttgtgcatgagcaaatggtgCAGCTGAGTGTCATAAAAGCAGTCAACAACATAATACAAGTGTAAAGTAAACACAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:0001501 skeletal system development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050793 regulation of developmental process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0051094 positive regulation of developmental process biological_process
GO:0048704 embryonic skeletal system morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100960

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059986 True 873 lncRNA 0.34 4 8959728 8963775

Neighbor

gene id symbol gene type direction distance location
XLOC_030838 adamts12 coding downstream 49025 8832299 ~ 8910703 (-)
XLOC_030837 fgf10b coding downstream 141887 8769069 ~ 8817841 (-)
XLOC_030835 mybbp1a coding downstream 194300 8712798 ~ 8765428 (-)
XLOC_030836 BX897662.2 coding downstream 236685 8722928 ~ 8723043 (-)
XLOC_030834 paip1 coding downstream 248571 8684652 ~ 8711157 (-)
XLOC_030840 NA coding upstream 66465 9030240 ~ 9031751 (-)
XLOC_030841 atp5meb coding upstream 106607 9070382 ~ 9073433 (-)
XLOC_030842 kcnv2b coding upstream 114423 9078198 ~ 9090178 (-)
XLOC_030843 NA coding upstream 143310 9107085 ~ 9127559 (-)
XLOC_030844 NA coding upstream 180592 9144367 ~ 9146777 (-)
XLOC_030832 NA non-coding downstream 315545 8640678 ~ 8644183 (-)
XLOC_030831 BX897662.3 non-coding downstream 319728 8637804 ~ 8640000 (-)
XLOC_030830 BX897662.1 non-coding downstream 324336 8635268 ~ 8635392 (-)
XLOC_030826 NA non-coding downstream 542895 8409461 ~ 8416833 (-)
XLOC_030845 AL845369.1 non-coding upstream 202620 9166395 ~ 9170534 (-)
XLOC_030846 AL845369.2 non-coding upstream 209763 9173538 ~ 9179436 (-)

Expression


Co-expression Network