XLOC_030840


Basic Information

Item Value
gene id XLOC_030840
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 9030240 ~ 9031751 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061517
ACTGATGATGCACGCGCACGCTTCATAGCCGATCTATATTAAACGGATAAAAACCCTCAAGTATCTTgaactaaaatgtaatggaaataaagccttttcaatatttttaaaaactgcatgttatttatttacacagccataattataaaattattagtaGTACTAGTCATAGTAGCGATAGTACCAGATcggaaaaaattacatttattcaaaATGACCTAATGCATTGGGTTAATTATATAACCTAATCCCTTTGGGTTacaataacccatagttgggaaggtgttataataacctatagttgggttttATGTTGgagtatttttaacccaactatttgaACAGGGAAGTATGTAAAATCTATTGGTTTTGATGGCTCAGATTTGATTGTGCAGTTGGAATGGTAATTGCAATGGAAACCATTAGCACTAATGTCTGGTTTCTGTGATTTCAAGAAGGATTTGTCTTGATTAGctataataaacagttaatatggTTTTGTTGAAgtaataattcacctaaaaatgaaaattctgtcatcatttactcaccctccactagttccaaacctgtttacatttctttctactgttgaacacaaaaaaacattttgatcaGTGATGAAAAAATTTACTTGCTTAGTacattttggtttttaaaatgaaagcCAGTGGAGTTTTCTTTTCCTATGCATGATATGTTGTTTTGCCTGAGTGTGAAAAAATAGGCAAACTTAATTTAATACACTTTATATACACCtgtatgtaaaatatacattggTTTACCTAAACTCTGTTAATCAGTCAATATATTGTGTTTTCAGGACTTATATCAACCAATGCGTCCAGGTCAATCAGGCTTTCCATTTGTTTTCCTCATGCCTACGGATCAGTTTCCTGGAATGCAACTTACGCCCAACATTTCTCCAAGTATCATACGCCCATATTCACCTGATTTCTACCCATTTCGGCCATCTGTGGCAGTGCAACCCCCCATTATCGTAGTGGACAGAGTCCCGAGTCCCACCACAGTCTCCCCGACAGCCAGACCCCAAACCACAGCCATTGCTGTTGGATGAGGAGCATCTTTCTGGAGCCCAATCATCACTTTCAGCTATCACATAAAACATGACTTGATTGTGAATCAAACTTGAATTTAATagattgtttaatgtttttataatattttaaatgtatgcttTTTTTGTTCTCAAACTAATGTTTGGACTGGTGTTGAGTGAAAAAATcatggaaatattaaatattagtaaTCAAGTTTCTGTCTTatcatttagagcaggggtttGGGGTCCGGGAGGCACAGAAAGCCTAGGGGGTCTGTGAAaacgaataataataattattattattattaataataataataaataaatataaacttaaattaaga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061517 True 1410 lncRNA 0.34 2 9030240 9031751

Neighbor

gene id symbol gene type direction distance location
XLOC_030839 AL928901.1 coding downstream 66465 8959728 ~ 8963775 (-)
XLOC_030838 adamts12 coding downstream 119537 8832299 ~ 8910703 (-)
XLOC_030837 fgf10b coding downstream 212399 8769069 ~ 8817841 (-)
XLOC_030835 mybbp1a coding downstream 264812 8712798 ~ 8765428 (-)
XLOC_030836 BX897662.2 coding downstream 307197 8722928 ~ 8723043 (-)
XLOC_030841 atp5meb coding upstream 38631 9070382 ~ 9073433 (-)
XLOC_030842 kcnv2b coding upstream 46447 9078198 ~ 9090178 (-)
XLOC_030843 NA coding upstream 75334 9107085 ~ 9127559 (-)
XLOC_030844 NA coding upstream 112616 9144367 ~ 9146777 (-)
XLOC_030845 AL845369.1 coding upstream 134644 9166395 ~ 9170534 (-)
XLOC_030832 NA non-coding downstream 386057 8640678 ~ 8644183 (-)
XLOC_030831 BX897662.3 non-coding downstream 390240 8637804 ~ 8640000 (-)
XLOC_030830 BX897662.1 non-coding downstream 394848 8635268 ~ 8635392 (-)
XLOC_030846 AL845369.2 non-coding upstream 141787 9173538 ~ 9179436 (-)
XLOC_030853 NA non-coding upstream 848437 9880188 ~ 9882404 (-)

Expression


Co-expression Network