XLOC_030841 (atp5meb)


Basic Information

Item Value
gene id XLOC_030841
gene name atp5meb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 9070382 ~ 9073433 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059987
ATATAAGTGCCACTTCTTCTTCTTTGTGCTCTTGCGCGTTTCTGACCTCTGCAGACTGAAAGCGGTCCTCAAGTGCAGCGAAATGGTTCCTCCAGTGCAAGTGTCGCCACTGATTAAGacTGCCAGGTGGTCTGCGTTGCTCGTTGGCATTATCTATGGAAAGCGCAGATATGATAACCTGAAACCAATtgcagaggaggagaggagaatAGAAGAGGAGGAGAAGAAGGTGCGAGAGGAGCAGGAGCGCATCGCTAAACAGCTAGCAGAAGCTAATGAGGACACAATCCTGAAATGAGCTGCCCAAAATGAAGTTTCCATCATAATCGATTCCTGTCTGGATAAAGGACGGTGCTTGTAATCAACCGTTTTGGTTTTACGGTGCCCTTTTCACACCACCCACAGATATTTAATGTCAGATTAATGTTCCTTTTTGTGAAATAGTCTCTGAATACATGCAAATATATGAGCTTGACCTTGTATACAGTTACTCTGATCTGGTTTGTTCTTTTCCCGAATACCTTCAATTACAGAAGAGACAGATGTTGTACATGATTAATACACACTGAATAAGACTTTCACTTTGGTAATCATCCACaccaatatttattaataaaatggtaATCCGT

Function

symbol description
atp5meb Predicted to enable proton transmembrane transporter activity. Acts upstream of or within response to hypoxia. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex. Is expressed in gill. Orthologous to human ATP5ME (ATP synthase membrane subunit e).

GO:

id name namespace
GO:0006754 ATP biosynthetic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0006811 ion transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0016020 membrane cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0005739 mitochondrion cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051130-1 Predicted to enable proton transmembrane transporter activity. Acts upstream of or within response to hypoxia. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase complex. Is expressed in gill. Orthologous to human ATP5ME (ATP synthase membrane subunit e).

Ensembl:

ensembl_id ENSDARG00000068940

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059987 True 629 mRNA 0.42 4 9070382 9073433

Neighbor

gene id symbol gene type direction distance location
XLOC_030840 NA coding downstream 38631 9030240 ~ 9031751 (-)
XLOC_030839 AL928901.1 coding downstream 106607 8959728 ~ 8963775 (-)
XLOC_030838 adamts12 coding downstream 159679 8832299 ~ 8910703 (-)
XLOC_030837 fgf10b coding downstream 252541 8769069 ~ 8817841 (-)
XLOC_030835 mybbp1a coding downstream 304954 8712798 ~ 8765428 (-)
XLOC_030842 kcnv2b coding upstream 4765 9078198 ~ 9090178 (-)
XLOC_030843 NA coding upstream 33652 9107085 ~ 9127559 (-)
XLOC_030844 NA coding upstream 70934 9144367 ~ 9146777 (-)
XLOC_030845 AL845369.1 coding upstream 92962 9166395 ~ 9170534 (-)
XLOC_030846 AL845369.2 coding upstream 100105 9173538 ~ 9179436 (-)
XLOC_030836 BX897662.2 non-coding downstream 347339 8722928 ~ 8723043 (-)
XLOC_030832 NA non-coding downstream 426199 8640678 ~ 8644183 (-)
XLOC_030831 BX897662.3 non-coding downstream 430382 8637804 ~ 8640000 (-)
XLOC_030853 NA non-coding upstream 806755 9880188 ~ 9882404 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G480067 NA non-coding CI01000338 null 310607 ~ 311975 (-)