XLOC_030843


Basic Information

Item Value
gene id XLOC_030843
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 9107085 ~ 9127559 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061937
AGCTTCTCCGAGTTGAAAAATACGCTAGTTAACGTTAGCCGTTGTTTATTTCCTTCACGGCTGTGTTTGAAGCGAAATAAAACGGATTTTTCAGGAAATCTTTGTTTGACTCGTTAATATTTCCTGTTTGATGAAGCATTACAGGTGTTTTGGTGAACCAGAGATTCGTTTTTTAATCAGAGTCGATTTAAATACGTTTACAGGATGCAGAGGAGATATACACGGAGAATGTGATGCGACTGAGAGAAGAACAAACCTTCAAGTACCACAACAGAATCGAGCATATGGAGAACATTAGAAACTGGACACATTTACCACATCCACAGTAGACATCTTCAGTGATTTTCATCGCTTGTATTTATTTTCAGAGGaaatgcaggacACCTGTGGGGAAACAGGCCAGCAGGACATTGAAGAGCACATACCGAAAATTGTGACCATACAcgcacatgcactacggacaatttagcctacccagttcacctatactttgtctttggacttgtggaggaaaccggagcacccggaggaaacccacgcgaatgcagggaaaacatgcaaactccatacagaaacaccaactgagtcgagaacttcttgctgtgaggcgattgtgctacccactgtgccaccatgacacccagTAATGTATATTATCGTATTTAAATgatctttttgttttctttttggtgCCCATTGAATGTTTGACAAGCACAGCTTTTAAAATACTCTTGAAACCGT

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061937 True 741 lncRNA 0.41 4 9107085 9127559

Neighbor

gene id symbol gene type direction distance location
XLOC_030842 kcnv2b coding downstream 16907 9078198 ~ 9090178 (-)
XLOC_030841 atp5meb coding downstream 33652 9070382 ~ 9073433 (-)
XLOC_030840 NA coding downstream 75334 9030240 ~ 9031751 (-)
XLOC_030839 AL928901.1 coding downstream 143310 8959728 ~ 8963775 (-)
XLOC_030838 adamts12 coding downstream 196382 8832299 ~ 8910703 (-)
XLOC_030844 NA coding upstream 16808 9144367 ~ 9146777 (-)
XLOC_030845 AL845369.1 coding upstream 38836 9166395 ~ 9170534 (-)
XLOC_030846 AL845369.2 coding upstream 45979 9173538 ~ 9179436 (-)
XLOC_030847 lrp13 coding upstream 52019 9179578 ~ 9216758 (-)
XLOC_030848 gak coding upstream 313639 9441198 ~ 9540770 (-)
XLOC_030836 BX897662.2 non-coding downstream 384042 8722928 ~ 8723043 (-)
XLOC_030832 NA non-coding downstream 462902 8640678 ~ 8644183 (-)
XLOC_030831 BX897662.3 non-coding downstream 467085 8637804 ~ 8640000 (-)
XLOC_030853 NA non-coding upstream 752629 9880188 ~ 9882404 (-)
XLOC_030859 NA non-coding upstream 1087955 10215514 ~ 10217606 (-)

Expression


Co-expression Network