G1187023


Basic Information

Item Value
gene id G1187023
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53119931 ~ 53122809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1353744
TAAAGACATTTCTCGTTAAAAAAGGAAATGacaaatgaataaaaatatataatcattAACACATACTAAGACAGCCAGAGCTTAAGGTATACATTTGAACGGTAAACAATTAACGCCTTTGTTAGTAACTGACTGTTGATTGTTTATAAACTTCTGTAGTGTTAACCAGCATAAAGGACTGATAGGACATGTTAGGTTCTTAGTCTTCCTCTATGAGAAAATGTGTTTGTCATAAAGCATTTTCAGCAGTAATCTTTTCAATCAATGCACTCTCATTCAGCTTCACTACTAACGGTTGTGTTCTTGTGTATGAATCGTCATTTATTCTCAAACAAAGAAGTAGCAAACACCACAACTTGACAAAAGTCAGTAGGTTAAACTCGGGGACCCCTCAAGAGCTAACATTTGATCTCTAGCTAGCTTACATGTTAATGTAGGTTATGTGTTTAAAATGTTCTCACAGAGCAGTGTGATCTTGTGTATTATGACAAATGCACTGTATGATAGAAGCAACAGGGAGAATGGCTGGGAAACGTGTTATAGAAGAACTCAAACATAACAGCCGTGTCAAACTTATGAAACAGAAACCATCCTTTCAAACTGTCCTTTGCCCACGTCATTCAGTTCACCCCGAAAAAACATTTCATACAGCAATTCAAAAATAGGACATTTATGATAGATAATCTATTGTGGAGAACCAGACTATGTTTCTGTCTAGGTTTGTATTTGGTTTTGATCTAATCACAGTAAATGGAAGTATCTTAAGTGAAGCGATCCAGAAACAGTTTAAAATGCTCATTTTAGGGGAACCCCTACTTGAGCTGGGAATATACTTCCCCTAAAGTGAACCTAGCGGATTCTGCTTAAATCAATAATACCTGAACTCTATAGGAACGGTCTACCATTCAATTCATTCACAGCTGAAAGTGTCAGTTGAATATTAGACCCAATAACTGTTACATTGAAAAgaacccctcacacacacaaacattcaacCAAACTGTAGAACATGTCAATATTGCCCCTGCACCCAATACATGTTAATCTAAATGAGTTTTGTTTCAGCAAgtaaacattgtagaataaaactaAATTCATAGAGCAGGAGCAATGAAGAATTGTTCCACATTGGGTGTTTGATTGGAATCCAGACGGTGTCTGTGGAGCTAGCTAACCATAGAATCTGTTAGAAGGCTGTTATCTTCCAACTGACGAAGAGACTTCTTTAAGAAACAGACACATTGTCTTAACAATACGGATGAAACTTGAAGCATCTGTTTGCTTACTAAGCACATAAACAGTTCTGCGAAACTAACAAAAACTTCTCAATTGGCAAGAGACAACACTCACACCCACTCCCTCTTAGATGATCAAACCTCAGCAGCACAAAGCAACATCTCTGTTAAAAGCTCCATCAGGCATCCACCTAAGAACAAATAAACAGGGTAGTGTGATAACATGGGCAACCACTGAAGGAAAAACTGGAAATATCACTGAAGTGTGGGAgtatgactgagtgtgtgtgtgtgcagtctgcAGCATGGGTGTGAATGCCAGTTGGAACGTTGGCAGCCACCTGCTATGCCCACTAAGCAAGCGGCAGTACTGCATGTTGCTGTGTGCAAGTCAGCTGTGTCGCAACATTGTACTAAGCCGCCCATGTTGGACTAATAAGAGCCATGGCTGTATATCAGAAGAGCTGTTCAAATGCCCTCTACTCTTCTCAACCCCCTCCTCATCCAGGAGACAAGTCCCCAGTACATGTATGACTAATGCCCAGTACAAAGGGatccatgtacagtacataagttAAGCCATCTAGGAAGACTGTCACTGTCCCTCAATGCCAATGTTCCACTGTAGCCCGACAACACAaactagagagggaggagagagagagggacagagggaagagaagagggaaggagaccCAAATTCTTCAGTATATAACTGAGGACATGATGCATGAGCAATCGGTTAGCGAGCGCTGCATGGGGACAGACTGGCAGGGAGCAAGGCAAGGACAGGCAGGGCGACCACGTTACCTAGCTAACACAACAGGATGTTTAAACAAACCCCCAATAACGCTGGCTGAACGACACCGGATCATAATGCAATGAAATGGACTAATAACGATAGTGGCTATTACGGTCAATAGAGAGATAGTAGGGTCCACATGgacatcagggtctgtctgtccgtcctgtTGGTCTCTAGTAGGTGAGTCTGGAGGCCTTCATGTTGtagcagggtctgtctgtctgtgtgtctgtccgtcctGTTGGTCTCTAGTAGGTGAGTCTGGAGGCCTTCATGTTGtagcagggtctgtctgtctgtgtgtctgtccgtcctGTTGGTCTCTAGTAGGTGAGTCTGGAGGTCTTCATGTTGTAGcagggtctgtgtgtctgtccgtcctGTTGGTCTCTAGTAGGTGAGTCTGGAGGTCTTCATGTTGtagcagggtctgtctgtctgtgtgtctgtccgtcctGTTGGTCTCTAGTAGGTGAGTCTGGAGGCCTTCATGTTGTAGCAGGGTCTGTCGGTGAGGCCTCCCGCCCCAGAGAGGAGTGCCAGGCCCTCAGCCTTCTCCAGCACCACCTCTAACTCCTGGAAGTCCTGCAGCCGAGCC
>TU1353746
TAAAGACATTTCTCGTTAAAAAAGGAAATGacaaatgaataaaaatatataatcattAACACATACTAAGACAGCCAGAGCTTAAGGTATACATTTGAACGGTAAACAATTAACGCCTTTGTTAGTAACTGACTGTTGATTGTTTATAAACTTCTGTAGTGTTAACCAGCATAAAGGACTGATAGGACATGTTAGGTTCTTAGTCTTCCTCTATGAGAAAATGTGTTTGTCATAAAGCATTTTCAGCAGTAATCTTTTCAATCAATGCACTCTCATTCAGCTTCACTACTAACGGTTGTGTTCTTGTGTATGAATCGTCATTTATTCTCAAACAAAGAAGTAGCAAACACCACAACTTGACAAAAGTCAGTAGGTTAAACTCGGGGACCCCTCAAGAGCTAACATTTGATCTCTAGCTAGCTTACATGTTAATGTAGGTTATGTGTTTAAAATGTTCTCACAGAGCAGTGTGATCTTGTGTATTATGACAAATGCACTGTATGATAGAAGCAACAGGGAGAATGGCTGGGAAACGTGTTATAGAAGAACTCAAACATAACAGCCGTGTCAAACTTATGAAACAGAAACCATCCTTTCAAACTGTCCTTTGCCCACGTCATTCAGTTCACCCCGAAAAAACATTTCATACAGCAATTCAAAAATAGGACATTTATGATAGATAATCTATTGTGGAGAACCAGACTATGTTTCTGTCTAGGTTTGTATTTGGTTTTGATCTAATCACAGTAAATGGAAGTATCTTAAGTGAAGCGATCCAGAAACAGTTTAAAATGCTCATTTTAGGGGAACCCCTACTTGAGCTGGGAATATACTTCCCCTAAAGTGAACCTAGCGGATTCTGCTTAAATCAATAATACCTGAACTCTATAGGAACGGTCTACCATTCAATTCATTCACAGCTGAAAGTGTCAGTTGAATATTAGACCCAATAACTGTTACATTGAAAAgaacccctcacacacacaaacattcaacCAAACTGTAGAACATGTCAATATTGCCCCTGCACCCAATACATGTTAATCTAAATGAGTTTTGTTTCAGCAAgtaaacattgtagaataaaactaAATTCATAGAGCAGGAGCAATGAAGAATTGTTCCACATTGGGTGTTTGATTGGAATCCAGACGGTGTCTGTGGAGCTAGCTAACCATAGAATCTGTTAGAAGGCTGTTATCTTCCAACTGACGAAGAGACTTCTTTAAGAAACAGACACATTGTCTTAACAATACGGATGAAACTTGAAGCATCTGTTTGCTTACTAAGCACATAAACAGTTCTGCGAAACTAACAAAAACTTCTCAATTGGCAAGAGACAACACTCACACCCACTCCCTCTTAGATGATCAAACCTCAGCAGCACAAAGCAACATCTCTGTTAAAAGCTCCATCAGGCATCCACCTAAGAACAAATAAACAGGGTAGTGTGATAACATGGGCAACCACTGAAGGAAAAACTGGAAATATCACTGAAGTGTGGGAgtatgactgagtgtgtgtgtgtgcagtctgcAGCATGGGTGTGAATGCCAGTTGGAACGTTGGCAGCCACCTGCTATGCCCACTAAGCAAGCGGCAGTACTGCATGTTGCTGTGTGCAAGTCAGCTGTGTCGCAACATTGTACTAAGCCGCCCATGTTGGACTAATAAGAGCCATGGCTGTATATCAGAAGAGCTGTTCAAATGCCCTCTACTCTTCTCAACCCCCTCCTCATCCAGGAGACAAGTCCCCAGTACATGTATGACTAATGCCCAGTACAAAGGGatccatgtacagtacataagttAAGCCATCTAGGAAGACTGTCACTGTCCCTCAATGCCAATGTTCCACTGTAGCCCGACAACACAaactagagagggaggagagagagagggacagagggaagagaagagggaaggagaccCAAATTCTTCAGTATATAACTGAGGACATGATGCATGAGCAATCGGTTAGCGAGCGCTGCATGGGGACAGACTGGCAGGGAGCAAGGCAAGGACAGGCAGGGCGACCACGTTACCTAGCTAACACAACAGGATGTTTAAACAAACCCCCAATAACGCTGGCTGAACGACACCGGATCATAATGCAATGAAATGGACTAATAACGATAGTGGCTATTACGGTCAATAGAGAGATAGTAGGGTCCACATGgacatcagggtctgtctgtccgtcctgtTGGTCTCTAGTAGGTGAGTCTGGAGGCCTTCATGTTGtagcagggtctgtctgtctgtgtgtctgtccgtcctGTTGGTCTCTAGTAGGTGAGTCTGGAGGCCTTCATGTTGtagcagggtctgtctgtctgtgtgtctgtccgtcctGTTGGTCTCTAGTAGGTGAGTCTGGAGGTCTTCATGTTGtagcagggtctgtctgtctgtccgtcctGTTGGTCTCTAGTAGGTGAGTCTGGAGGCCTTCATGTTGTAGCAGGGTCTGTCGGTGAGGCCTCCCGCCCCAGAGAGGAGTGCCAGGCCCTCAGCCTTCTCCAGCACCACCTCTAACTCCTGGAAGTCCTGCAGCCGAGCC
>TU1353749
ttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgtaatgtggcaaaaggttgcaaagttcaagggggccgaatactttcgcaaggcactgtaccttcccTTTCACCCCCATTGATAAACACGTTCCATACTTGTAGGCATCGATACAAACTAAAGACATTTCTCGTTAAAAAAGGAAATGacaaatgaataaaaatatataatcattAACACATACTAAGACAGCCAGAGCTTAAGGTATACATTTGAACGGTAAACAATTAACGCCTTTGTTAGTAACTGACTGTTGATTGTTTATAAACTTCTGTAGTGTTAACCAGCATAAAGGACTGATAGGACATGTTAGGTTCTTAGTCTTCCTCTATGAGAAAATGTGTTTGTCATAAAGCATTTTCAGCAGTAATCTTTTCAATCAATGCACTCTCATTCAGCTTCACTACTAACGGTTGTGTTCTTGTGTATGAATCGTCATTTATTCTCAAACAAAGAAGTAGCAAACACCACAACTTGACAAAAGTCAGTAGGTTAAACTCGGGGACCCCTCAAGAGCTAACATTTGATCTCTAGCTAGCTTACATGTTAATGTAGGTTATGTGTTTAAAATGTTCTCACAGAGCAGTGTGATCTTGTGTATTATGACAAATGCACTGTATGATAGAAGCAACAGGGAGAATGGCTGGGAAACGTGTTATAGAAGAACTCAAACATAACAGCCGTGTCAAACTTATGAAACAGAAACCATCCTTTCAAACTGTCCTTTGCCCACGTCATTCAGTTCACCCCGAAAAAACATTTCATACAGCAATTCAAAAATAGGACATTTATGATAGATAATCTATTGTGGAGAACCAGACTATGTTTCTGTCTAGGTTTGTATTTGGTTTTGATCTAATCACAGTAAATGGAAGTATCTTAAGTGAAGCGATCCAGAAACAGTTTAAAATGCTCATTTTAGGGGAACCCCTACTTGAGCTGGGAATATACTTCCCCTAAAGTGAACCTAGCGGATTCTGCTTAAATCAATAATACCTGAACTCTATAGGAACGGTCTACCATTCAATTCATTCACAGCTGAAAGTGTCAGTTGAATATTAGACCCAATAACTGTTACATTGAAAAgaacccctcacacacacaaacattcaacCAAACTGTAGAACATGTCAATATTGCCCCTGCACCCAATACATGTTAATCTAAATGAGTTTTGTTTCAGCAAgtaaacattgtagaataaaactaAATTCATAGAGCAGGAGCAATGAAGAATTGTTCCACATTGGGTGTTTGATTGGAATCCAGACGGTGTCTGTGGAGCTAGCTAACCATAGAATCTGTTAGAAGGCTGTTATCTTCCAACTGACGAAGAGACTTCTTTAAGAAACAGACACATTGTCTTAACAATACGGATGAAACTTGAAGCATCTGTTTGCTTACTAAGCACATAAACAGTTCTGCGAAACTAACAAAAACTTCTCAATTGGCAAGAGACAACACTCACACCCACTCCCTCTTAGATGATCAAACCTCAGCAGCACAAAGCAACATCTCTGTTAAAAGCTCCATCAGGCATCCACCTAAGAACAAATAAACAGGGTAGTGTGATAACATGGGCAACCACTGAAGGAAAAACTGGAAATATCACTGAAGTGTGGGAgtatgactgagtgtgtgtgtgtgcagtctgcAGCATGGGTGTGAATGCCAGTTGGAACGTTGGCAGCCACCTGCTATGCCCACTAAGCAAGCGGCAGTACTGCATGTTGCTGTGTGCAAGTCAGCTGTGTCGCAACATTGTACTAAGCCGCCCATGTTGGACTAATAAGAGCCATGGCTGTATATCAGAAGAGCTGTTCAAATGCCCTCTACTCTTCTCAACCCCCTCCTCATCCAGGAGACAAGTCCCCAGTACATGTATGACTAATGCCCAGTACAAAGGGatccatgtacagtacataagttAAGCCATCTAGGAAGACTGTCACTGTCCCTCAATGCCAATGTTCCACTGTAGCCCGACAACACAaactagagagggaggagagagagagggacagagggaagagaagagggaaggagaccCAAATTCTTCAGTATATAACTGAGGACATGATGCATGAGCAATCGGTTAGCGAGCGCTGCATGGGGACAGACTGGCAGGGAGCAAGGCAAGGACAGGCAGGGCGACCACGTTACCTAGCTAACACAACAGGATGTTTAAACAAACCCCCAATAACGCTGGCTGAACGACACCGGATCATAATGCAATGAAATGGACTAATAACGATAGTGGCTATTACGGTCAATAGAGAGATAGTAGGGTCCACATGgacatcagggtctgtctgtccgtcctgtTGGTCTCTAGTAGGTGAGTCTGGAGGTCTTCATGTTGtagcagggtctgtctgtctgtgtgtctgtccgtcctGTTGGTCTCTAGTAGGTGAGTCTGGAGGCCTTCATGTTGTAGCAGGGTCTGTCGGTGAGGCCTCCCGCCCCAGAGAGGAGTGCCAGGCCCTCAGCCTTCTCCAGCACCACCTCTAACTCCTGGAAGTCCTGCAGCCGAGCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1353744 False 2638 lncRNA 0.44 2 53119931 53122643
TU1353746 False 2563 lncRNA 0.43 2 53119931 53122643
TU1353749 True 2587 lncRNA 0.42 3 53119931 53122809

Neighbor

gene id symbol gene type direction distance location
LOC110485222 LOC106601739 coding downstream 12012 53093666 ~ 53107919 (-)
LOC110486776 LOC106606809 coding downstream 378376 52730378 ~ 52741555 (-)
LOC110486769 gtf2f1 coding downstream 689897 52415319 ~ 52430034 (-)
LOC110485216 NA coding downstream 788355 52155640 ~ 52331576 (-)
LOC110538721 NA coding downstream 930228 52186557 ~ 52189703 (-)
LOC110538731 LOC106592182 coding upstream 123585 53246394 ~ 53250376 (-)
LOC110539023 LOC106601728 coding upstream 235551 53358360 ~ 53417730 (-)
LOC118938325 LOC106606746 coding upstream 307223 53430032 ~ 53440075 (-)
LOC110538745 LOC106606750 coding upstream 327745 53450554 ~ 53456191 (-)
mfsd13al tm180 coding upstream 335702 53458511 ~ 53464014 (-)
G1186993 LOC106592069 non-coding downstream 72995 53043502 ~ 53046936 (-)
G1186972 NA non-coding downstream 104654 53012004 ~ 53015277 (-)
G1186970 NA non-coding downstream 116802 53002908 ~ 53003129 (-)
G1186969 NA non-coding downstream 117832 53001849 ~ 53002099 (-)
G1186966 NA non-coding downstream 124389 52994626 ~ 52995542 (-)
G1187704 NA non-coding upstream 88631 53211440 ~ 53211640 (-)
G1187711 NA non-coding upstream 103825 53226634 ~ 53226850 (-)
G1187717 NA non-coding upstream 115237 53238046 ~ 53238395 (-)
G1187718 NA non-coding upstream 115645 53238454 ~ 53238695 (-)
G1187734 NA non-coding upstream 160611 53283420 ~ 53284114 (-)
G1186670 LOC100194703 other downstream 460122 52659331 ~ 52659809 (-)
G1186381 NA other downstream 1089271 51924963 ~ 52030660 (-)
G1186216 NA other downstream 1108720 52010690 ~ 52011211 (-)
G1186154 NA other downstream 1629690 51489777 ~ 51490241 (-)
G1186075 NA other downstream 1745977 51352309 ~ 51373954 (-)
mosmoa C20H16orf52 other upstream 484215 53607021 ~ 53638313 (-)
si:ch73-374l24.1 LOC105026133 other upstream 683835 53806640 ~ 54049592 (-)
G1188147 NA other upstream 1326074 54448883 ~ 54450020 (-)
G1188127 LOC106601757 other upstream 1342724 54409911 ~ 54470838 (-)
G1188186 LOC106588841 other upstream 1476592 54599401 ~ 54600449 (-)

Expression


Co-expression Network