XLOC_030847 (lrp13)


Basic Information

Item Value
gene id XLOC_030847
gene name lrp13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 9179578 ~ 9216758 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059991
CAATTAAAGAGCCTCATGTGGAAGTGAGCCGGTTTGACCCGCTGTTCCTGCAGTCATGGGTTTATTTGTGCAGCTGAACGTCGTTTTGGGGATATTTCTGCTTCTGAGAGCTGAACGTGTTTTGGCTGCAGTGGTTTCTGAAGACGTGGCTCTGCCGTACTGCAGACTGGGCTTCCAGCTCTGCGAAGACAGATCAGGTTGTGTGCTAAACACTCATTTATGTGATGGTGAGAACGACTGCGATGACGGGTCCGATGAAGATAATTGTCCCACAGTCTGCAGCGTAGGTCACTTCCAGTGTGCACATGGTAAGATGTGCATCTGGCTTCGTCAGGTGTGTGACGGTGTGCCTCAGTGTCAGGATCGCTCAGATGAACTCAACTGCTTCAAACCAGACGATGGCTGTGCTCATCGCTGTGATGGAAACACTCGCTGCGTCCCAGAATCCTTTGTGTGTGATGGAGATGTAGACTGCGTGGATGGCAGTGATGAGGCCAACTGTGaagaaaaccctgatgatgatgatgatgatgatgaagacctCCTTGATGAAAAGGAAGAAATGACAGGAGAGCATGAAGTATCACAAAATGTTCCTGCAACTAAAGGCCCTCTGCGCTGCTCTATTGCCTCGAAGTTATGCAGAGATGGGACTGACTGTGTGATGTTAAATCATGTGTGCGATGGTGAGCTTGACTGTAAAGACGGCTCTGATGAAGAAGACTGCCCTGTGCAGTGTGAATCTGGTCAGTTTCAGTGTGCACATGGTAAGAAGTGCATCGACCGTCGGCAATTGTGTGACGGTGTGCCTCAGTGTCAGGATCGCTCGGATGAACTCAACTGCTTCAAACCAGATGATGACTGCGCTCATCGATGTGACGAAAACACCCGCTGTGTCCCAGAATCCTTTGTGTGTGACGGAGACCCAGACTGTGTGGACGGCAGCGATGAGGCCAACTGTGGTGAGGAGAGCTGCAGCAGTGCGGAGTGGCAGTGCAGCAGCGGTCAGTGTGTGTCGCTCAGCATGCGTTGTGATGGTCATTCAGACTGCAGAGATCATTCAGATGAGGAAGACTGTGCCGAGCCTCCGCCGTGCAGTACCAATCGCCGCTGTCCCAAGAGCCACGAGTGTCTGCTGGACGAGTGGATGTGTGACGGAGAGACGGACTGCAAAGATGGCACTGATGAGAAGAACTGTAAGGAGTCTCCAGTGCAGTGCGGCGAGTACCAGTTTTCCTGCTCCTCCAAAACTCAGTGTATCCCTCAATCCTGGCGCTGTGATGGGTCTGAAGACTGCAGGGATGGCAGTGACGAATCTGCTTGTGCAAGTGTGTCCTGTCCTCCCCACCTCTTCCAGTGTGGGAGTTCGGAGTGTGTGGAGTTTTCTCAACTCTGTAATGGAGTCACCAACTGTCTGGACGGGTCAGATGAGGGCGGCTCCTGTCAGACTGAGAAATGCTCTGAACAGTTAAAGTGTGCCCAAGACTGCCACAGCACACCTGCAGGAGCGCGCTGCGGGTGCAGGATGGGCTATAAACCTGTGGATGATGGCCTGAGGTGTGCAgatgtggatgagtgtgtggaGCGTCCAAACATCTGTTCACACCGCTGTAACAACACTCTAGGCTCTTTCCAGTGCTCCTGTAGTCATGGTTATGTTCTGGAACCTGATGGCCACAGCTGCAAAATCACAGGTGAGCCGTACCTGCTGGCATCAGTCCAGTCTGAGGTGTTTCTGCTGGGTCTGAGGAGCTCCAGTCTGGACATCCTGCTGTCAGCAGAGAAGAGGTTTGTCCTGTCGCTCGACTATGACTGGCAGAAGCAAAGAGTTTACTGGATCAACCTCAACACGGACACCATCAAATGGCTCTCACTGGACCAGAAGAACAAGGGAACCTTCCTTAAAGGTATCAGTGCAGACAGTCTTGCAGTGGACTGGGTGGCAAGGAACCTCTACTGGACTGACAGTGAAAACAGTCAGATCAATGCTGTGAGGCTGGACAGTGAGATCGGCAGATCAACAGATCGAGTCATGATCCTGGGAGAAGATCTGGGACAGCTGCGCTCCATCGCCCTGATGCCACAGAAAGGAATAATGTTCTGGTCAGAAACTGGGGACGAGGCTCAGATTGAAAGAGCAGGAATGGACGGTTCAGACAGACGTGTGCTGGTCAGTAAATCTCTGCGGTGGCCGGTCAGTCTGACCGTCGACTCCCTGCATCAAAGGATCTACTGGACTGATGAGAAACTCAAGTGCATCGGTTCAGCTAACATTGACGGAGGAGATGTAAAGCTCTTGCAGCTCATGGAAACCCCCAGTCCATTCTCAGTCTCAGTCTTCAATGATCAGGTCTACTGGTCTGATACCAAAAGAGGAACCATTCAGAGAGCTCACAAAACCACAGGAAAACAGCGCCAAGTCCTGCTCAAACGTCCCGGACAGCCATTCGGATTGAAGgtcaTTCATGGTCTCCTCCAAGAGGACGTCTCGAACCCCTGTGAGTCCCAGGGCTGCTCTCACCTGTGTGTTTTAGCTCCGGGGCTGAAAGCTGTGTGCAAGTGTTCGACTCAGTTCCTGCTGGATGAAGATGGCCTGACCTGCTCCAAACCCAAAGACTCATCCTTCTTGCTGTTTCTCTCTCCTGCTGCAGTCACTCAGGTGTATCTACAGAACAGACACAGTGACGTGACCCCTCAGAAGTGGCCCGAGCATCGCCGTTTTGACCTTCCCAAAATGAACCACCCAAACATGCTTGATTTAGTACTGCGAGACCTCACGCTGTACGTGTCGGACACGGATCAGCCACTCGTGGGGCTCTTCAAGATGAAGGACGCTGCGCTGGTGCCCCGTGGAAAACTCTTCCAGCTCCACAAAGACTCTGTGAGGGTGTTTTCGGTGGACTGGATCACTCTGAACGTATACTGGAGCAGTGAGAAGCTACCCGGCATACAGGTCACTTCACCGGATGGCAGATTCACCAGTGTTTTAATACGGGAAGGTGTGGGAATCATTGAATCCATTGGTTTGGAGCCGCCAAGTGGACGCCTCTGCTTCTCAAACAGGATCCAAGAGGGAAAGATGAGCATGGTggagtgtgtgtttatgaatggACTGAACAGGACTGTGGTGTGGAGAAATTCAGTCCGGCCGACTTCACTGATCTTGACGGATGAAGGGAATCGAGTCTACTGGGCTGATACTGGTCTGGCGGTAATTGCTTCGGTTGGCACAGATGGTTCCGGATAcaaggaaataaaaacagaagaagGCCTGATGGCATTTACTTTGGTCAACAAAGTGCTTGTTTGGATCACTAAAAAAGACTCCACTAAGTGTTGGTTCAGTGAAGATGAGCAGCGGTCAGGAAAACTCTGGTTTGAAGTGGACACTGAGATCGTCAACCTGAAAGCATTCACAAAGTCGAGACAGAAAGGCACTAATCTCTGCTCTAATGGTAATGGTGGCTGCAATCAGCTCTGTCTGGCGTTCCCGGGAGGAAAGACGTGTCGTTGTGCTCATGATCATCGTCTGCTCGATGACGGAGACTGTAGACTTGAGTCCCACTGTCCTGAAAACAGCAAACCATGTCTGAGCGAAGACATGTGCCTTCCTCTGGAGCAGTTCTGCAATGGCGTCGCAGATTGTCCAGATCATTCTGACGAGAACTgtcTTGATGATAAACAGTATAAAACGATTGGGATCAATCCTAAATCGTTTGCTCCAGGTTTGAGTGAGAACATCGTCCCGGCGAATGTGGAGTCAGAGATGTGTGACATTAAGCTGTGTAAAGGGAACGGCAAGTGTGTGAGCCGGAACGGCAAGACTGTGTGTGACTGTCATCCAGAATTTAGCGGTGAAAACTGTGAGAATCGTTCAGGTCTCTTGCAGGGACCCGTCCTGTATGGAGTGATTGGACTGTGTGCTGGTGTGGTGGTCCTGGCAGTCACTGTCGGCATCATTCAGAGGAAGAAAGCCACAAATCAAAGaCGAGCAGCTCACACTGTGGACATGCAGGAGACGGGCATGAAGGAACTGGAGAAAAGACGTGAAGCATCTTCAGCTAGATCGAATGGAAAGGACACAGAAGTATCAGAGGAAAATGTGGTGACGTCTGTGGACTAGCTTCATCACGTCGGCTGAAGTACCTTGGTTTCTTGAATAAAGTCATGTCGCATTTGGAAAAGTCAAATTCACAGTCTGTTTAATATTATTGTCTGCATGTAATCAGACTTTCACTAGTCATTCTGTTGTCATCCAATGGGTCTAAAGGCAGAATACTTTAACTCACCGACTGCTGATATCATCTTGGTTTACCACATAAGTTCAGTAAGAACTGATTTTGCCACAGCCACCACATTGTGTATCAGTCATAATGAAAgattaaactgattttatttaa
>TCONS_00059992
CGAAGACATGTGCCTTCCTCTGGAGCAGTTCTGCAATGGCGTCGCAGATTGTCCAGATCATTCTGACGAGAACTgtcTTGATGATAAACAGTATAAAACGATTGGGATCAATCCTAAATCGTTTGCTCCAGGTTTGAGTGAGAACATCGTCCCGGCGAATGTGGAGTCAGAGATGTGTGACATTAAGCTGTGTAAAGGGAACGGCAAGGACCCGTCCTGTATGGAGTGATTGGACTGTGTGCTGGTGTGGTGGTCCTGGCAGTCACTGTCGGCATCATTCAGAGGAAGAAAGCCACAAATCAAAGaCGAGCAGCTCACACTGTGGACATGCAGGAGACGGGCATGAAGGAACTGGAGAAAAGACGTGAAGCATCTTCAGCTAGATCGAATGGAAAGGACACAGAAGTATCAGAGGAAAATGTGGTGACGTCTGTGGACTAGCTTCATCACGTCGGCTGAAGTACCTTGGTTTCT
>TCONS_00059993
CTCCAGTGCAGTGCGGCGAGTACCAGTTTTCCTGCTCCTCCAAAACTCAGTGTATCCCTCAATCCTGGCGCTGTGATGGGTCTGAAGACTGCAGGGATGGCAGTGACGAATCTGCTTCAATAACTTGATGTGCAGTAATAGTACTGCTCTGGTCTGTGTTTGATCAGGTGCAAGTGTGTCCTGTCCTCCCCACCTCTTCCAGTGTGGGAGTTCGGAGTGTGTGGAGTTTTCTCAACTCTGTAATGGAGTCACCAACTGTCTGGACGGGTCAGATGAGGGCGGCTCCTGTCAGACTGAGAAATGCTCTGAACAGTTAAAGTGTGCCCAAGACTGCCACAGCACACCTGC
>TCONS_00059994
CAATTAAAGAGCCTCATGTGGAAGTGAGCCGGTTTGACCCGCTGTTCCTGCAGTCATGGGTTTATTTGTGCAGCTGAACGTCGTTTTGGGGATATTTCTGCTTCTGAGAGCTGAACGTGTTTTGGCTGCAGTGGTTTCTGAAGACGTGGCTCTGCCGTACTGCAGACTGGGCTTCCAGCTCTGCGAAGACAGATCAGGTTGTGTGCTAAACACTCATTTATGTGATGGTGAGAACGACTGCGATGACGGGTCCGATGAAGATAATTGTCCCACAGTCTGCAGCGTAGGTCACTTCCAGTGTGCACATGGTAAGATGTGCATCTGGCTTCGTCAGGTGTGTGACGGTGTGCCTCAGTGTCAGGATCGCTCAGATGAACTCAACTGCTTCAAACCAGACGATGGCTGTGCTCATCGCTGTGATGGAAACACTCGCTGCGTCCCAGAATCCTTTGTGTGTGATGGAGATGTAGACTGCGTGGATGGCAGTGATGAGGCCAACTGTGGTGAGGAGAGCTGCAGCAGTGCGGAGTGGCAGTGCAGCAGCGGTCAGTGTGTGTCGCTCAGCATGCGTTGTGATGGTCATTCAGACTGCAGAGATCATTCAGATGAGGAAGACTGTGCCGAGCCTCCGCCGTGCAGTACCAATCGCCGCTGTCCC

Function

symbol description
lrp13 Predicted to enable calcium ion binding activity and catalytic activity. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130729-1 Predicted to enable calcium ion binding activity and catalytic activity. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000023479

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059991 False 4400 mRNA 0.50 21 9179578 9216758
TCONS_00059992 False 474 processed_transcript 0.49 5 9179822 9186906
TCONS_00059993 False 348 processed_transcript 0.52 2 9203723 9205891
TCONS_00059994 True 658 mRNA 0.53 4 9207061 9216758

Neighbor

gene id symbol gene type direction distance location
XLOC_030846 AL845369.2 coding downstream 142 9173538 ~ 9179436 (-)
XLOC_030845 AL845369.1 coding downstream 9044 9166395 ~ 9170534 (-)
XLOC_030844 NA coding downstream 32801 9144367 ~ 9146777 (-)
XLOC_030843 NA coding downstream 52019 9107085 ~ 9127559 (-)
XLOC_030842 kcnv2b coding downstream 89400 9078198 ~ 9090178 (-)
XLOC_030848 gak coding upstream 224440 9441198 ~ 9540770 (-)
XLOC_030849 sh2b3 coding upstream 340185 9556943 ~ 9625459 (-)
XLOC_030850 si:ch211-193c2.2 coding upstream 460547 9677305 ~ 9678075 (-)
XLOC_030851 ddr2l coding upstream 483164 9699922 ~ 9793273 (-)
XLOC_030852 zgc:158343 coding upstream 606996 9823754 ~ 9824908 (-)
XLOC_030840 NA non-coding downstream 147827 9030240 ~ 9031751 (-)
XLOC_030853 NA non-coding upstream 663430 9880188 ~ 9882404 (-)
XLOC_030859 NA non-coding upstream 998756 10215514 ~ 10217606 (-)
XLOC_030861 NA non-coding upstream 1272179 10488937 ~ 10500797 (-)
XLOC_030862 BX511089.3 non-coding upstream 1291068 10507826 ~ 10508814 (-)
XLOC_030863 CR790366.3 non-coding upstream 1504136 10720894 ~ 10724665 (-)

Expression


Co-expression Network