XLOC_030853


Basic Information

Item Value
gene id XLOC_030853
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 9880188 ~ 9882404 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061520
tgggaaagtacaacacatttttttacaatcttctttgctcaaataaaatgaaaactttacgatggtgttgtctcgacaattagaaaaataaaaaaaatagtgtgaaactgataacgccagcaagaagagagaataacttctaatttactcatgaccataaacactgtttgaaacacctcgcacatgtaatcatattatataatacatacgtaaatacaaataaatgttattttataaaaaaaatcatataaaaaactcaaggattttagatcctgatgatcgttaaacgcgtcataacagtgttgtgaaaagggtgtaattgttaaaaataggtacaaacatcagatataaacaaaaacctaaacaaacacttctatgtacataacgtcataaaaatacttgttttatttacctcgcgctgccgtccttgtactgccgtgaacaggaaattctgggaatggaggacggagagttgaatcgattcgtcttcaacaaaccgatcagtgtgacatcaaaacatcgcgagaacaacagacagctccgtgtgcatttgaatccatctcgcgatattgtatcacttcagagcagcaagacccatgggatttcatcagccactcaccatcagagtcctcagtggaagctgagaagagcagaagaggaagccaagcaagagatgccagaaaaaagggggaaggaaataatgtgttattttgctgtttgagtataggcaggcgcagtgggtagcacaatcgcctcacagcaagaaggtcgctggttcgagcctcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttagcgtgggtttcctccgggtgctcccacaagtccaaaaatatgtggtgacattgggtaaggtaaaattgtccgtagtgtatgtgtgtgaatgagtgtgtatggatgtttcccagtgatgggttgcagctgggtggcaacacggtggcacagtaggtagtgctgtttcctcacatcaagaaggtttctgcatggagttctccctgcgttcgcgtgggtttcctccgggtgctccggtttccctcacagtccaaagacatgcggtacaggtgaattgggtaggctaaattgtccgtagtgaatgtgtgtgagtgggtgtgtatggatgtttccaagagatgggttgcagctggaagggcatccactgcgtaaaacatatgctggataagatggtggtttattccactgtggcgaccccagattaacaaaaggacaaagccaaagagaaaatgaatgagtataggcaatgatagacaagacaatgtttgattaatatgaagtcttttaaaatgcttatttattaaaataaaggttacaaagtaaag

Function

GO:

id name namespace
GO:0021535 cell migration in hindbrain biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061520 True 1379 lncRNA 0.41 2 9880188 9882404

Neighbor

gene id symbol gene type direction distance location
XLOC_030852 zgc:158343 coding downstream 55280 9823754 ~ 9824908 (-)
XLOC_030851 ddr2l coding downstream 86915 9699922 ~ 9793273 (-)
XLOC_030850 si:ch211-193c2.2 coding downstream 202113 9677305 ~ 9678075 (-)
XLOC_030849 sh2b3 coding downstream 254729 9556943 ~ 9625459 (-)
XLOC_030848 gak coding downstream 339418 9441198 ~ 9540770 (-)
XLOC_030854 tor4ab coding upstream 11739 9894143 ~ 9948497 (-)
XLOC_030855 WDR31 coding upstream 100946 9983350 ~ 10002260 (-)
XLOC_030856 CR936408.1 coding upstream 121054 10003458 ~ 10007897 (-)
XLOC_030857 CR936408.2 coding upstream 129518 10011922 ~ 10012971 (-)
XLOC_030858 chek2 coding upstream 173576 10055980 ~ 10082244 (-)
XLOC_030846 AL845369.2 non-coding downstream 700752 9173538 ~ 9179436 (-)
XLOC_030845 AL845369.1 non-coding downstream 709654 9166395 ~ 9170534 (-)
XLOC_030844 NA non-coding downstream 733411 9144367 ~ 9146777 (-)
XLOC_030843 NA non-coding downstream 752629 9107085 ~ 9127559 (-)
XLOC_030840 NA non-coding downstream 848437 9030240 ~ 9031751 (-)
XLOC_030859 NA non-coding upstream 333110 10215514 ~ 10217606 (-)
XLOC_030861 NA non-coding upstream 606533 10488937 ~ 10500797 (-)
XLOC_030862 BX511089.3 non-coding upstream 625422 10507826 ~ 10508814 (-)
XLOC_030863 CR790366.3 non-coding upstream 838490 10720894 ~ 10724665 (-)
XLOC_030865 NA non-coding upstream 1085395 10967799 ~ 10971601 (-)

Expression


Co-expression Network