XLOC_030904 (npffr1l2)


Basic Information

Item Value
gene id XLOC_030904
gene name npffr1l2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 14165567 ~ 14239078 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060081
CAGGAGAAATGGAGACGTCACAGGAGCTCACCACACTTGATATGAACATCAGCCTTTCAAATGCCTACACGAACAACAGTAATGCTACCAACCACAGCAGCATCACCTACTACCCCTACTACCAGCACTCTCTGCCTGTGGCCGCCGCTCTGACTTTGGCTTACCTCTTCATCTTTCTGCTGTGCATGGTGGGAAACGGCttggtgtgtctgattgtgttGGAGAATCGGCGGATGAGAACAGTCACGAACCTCTTCATACTTAACCTGGCTGTGAGCGACCTTCTAGTGGGGGTTTTTTGCATCCCAACAACCCTGGTGGACAACCTCATCACAGGCTGGCCGTTCACTAACACCGTCTGTAAGATGAGCGGTCTGGTGCAAGGCATGTCTGTGTCTGCCTCTGTGTTCACACTGGTGGCCATCGCAGTGGACAGGTTCCGTTGCATTGTGTACCCGTTCCAACCCAAACTCACCCTGCTGGTTGCCAAGGTGACCATAGTGATGATCTGGGTGCTTGCTGTAGTGATCATGTGCCCGTCGGCTGTGACGTTAACCGTGGAGAGAGTGGAGCATCACTACATGGTCCGCGGCGAAGACTACAACCACACATACCCGCTTTTCTCCTGCTTTGAGAACTGGGCCAATCCACAGATGAGGAAGGTCTACACCACTGTCCTGTTTGCACACATTTACCTCATCCCCCTCACCTTAATCACGCTAATGTATGGGCGAATCGGGATCAAACTCTACACCACGTCTGTGATCTCAGGGAATGATCAGCATGATGGAGGACAGCCGCACACGTCCCCTCAGGCCCCTGGAGGCCAGCAGGAAGGTCGGCCCCTCATTTCTCAGAAGAAGATCAAAGTTATTAAGATGCTGAGCATCGTGGCCCTGTTATTCACAATTTCCTGGCTGCCTCTGTGGACTCTGATGCTCCTCACGGATTATGGAGGTCTAAATGAAGATGAGCTAGAACTGCTGAGCGGCTATGTGTTCCCGTTTGCTCACTGGTTGGCCTTCTCCAATTCCAGCGTCAATCCGATCATCTATGGTTACTACAACGAGAACTTCAAGAGGGGTTTTCAGGCGGTCTGCAGGGCACATTCGTGCTGCTTCGAGGGAATGACAGCAAGAAGAGGAATGCGACGGAAAGCAAGAGGAGAAACGAGGGATCCTGCCGTTAACTCCAATCCTTTGAATTTTGGTGCAAGGAACAGGGTTTACACCGACGGCGACCTGAAGAACTCTGGCACGTGTTTGGAGCTGGAGCACAGAAGGACTGGAAGACTTTGTAATAACTCTGTGTGCTCCAATGAAACTGGATCCAGCGTGGGATCTGGGATTAAAGGGGTGACGAACCAAAAAGCCTTTCAGATGGAGGAGGCAGAGAAAAAAAGTCCCATCAGAGGGAGTAAAAACCAAGCCTGGGATCAGTAG
>TCONS_00060082
GAAGAAAGTACCGGTGTTTGCAGAGGACACAGAGCtgcccatctctctctctctctctctctctctctctctctctctctctctctctctctctctctaatcaTGTGGGGGGTGGGTGCAGCAGACGTGGCGTGGATGAGCGTGCAGGGGCTGAGAGAAGCTGTGGATATGATTGAAAGGGTTCTTCTGCGCGCGCTACTTGTTGACTCAGAGCTTCACCGGGAGCGCAGAGCGCATCATCGGAGATGCCAGTAACACGACGTGATCTACAGCCGTCCTTCAAGCTCTCTCAGCCACACTAATTCATTTGTGAAAGTGGAAACCAAGGAATCTTACACCCCATTGACCGCATACTCAAGaaattgtgtgtttttaaagcCACAGTTAAAAGTAGCCGAAAGACGTTGACTTGCAGTGCGACGCAAGGGGCAGAGGAGAGGAAAGTGTACAGCGCTCGTTTGCAGGTGCCGTGTGCAGCTCCAGGACAGCATGGCGGGTGAGCCAGGAGAAATGGAGACGTCACAGGAGCTCACCACACTTGATATGAACATCAGCCTTTCAAATGCCTACACGAACAACAGTAATGCTACCAACCACAGCAGCATCACCTACTACCCCTACTACCAGCACTCTCTGCCTGTGGCCGCCGCTCTGACTTTGGCTTACCTCTTCATCTTTCTGCTGTGCATGGTGGGAAACGGCttggtgtgtctgattgtgttGGAGAATCGGCGGATGAGAACAGTCACGAACCTCTTCATACTTAACCTGGCTGTGAGCGACCTTCTAGTGGGGGTTTTTTGCATCCCAACAACCCTGGTGGACAACCTCATCACAGGCTGGCCGTTCACTAACACCGTCTGTAAGATGAGCGGTCTGGTGCAAGGCATGTCTGTGTCTGCCTCTGTGTTCACACTGGTGGCCATCGCAGTGGACAGGTTCCGTTGCATTGTGTACCCGTTCCAACCCAAACTCACCCTGCTGGTTGCCAAGGTGACCATAGTGATGATCTGGGTGCTTGCTGTAGTGATCATGTGCCCGTCGGCTGTGACGTTAACCGTGGAGAGAGTGGAGCATCACTACATGGTCCGCGGCGAAGACTACAACCACACATACCCGCTTTTCTCCTGCTTTGAGAACTGGGCCAATCCACAGATGAGGAAGGTCTACACCACTGTCCTGTTTGCACACATTTACCTCATCCCCCTCACCTTAATCACGCTAATGTATGGGCGAATCGGGATCAAACTCTACACCACGTCTGTGATCTCAGGGAATGATCAGCATGATGGAGGACAGCCGCACACGTCCCCTCAGGCCCCTGGAGGCCAGCAGGAAGGTCGGCCCCTCATTTCTCAGAAGAAGATCAAAGTTATTAAGATGCTGAGCATCGTGGCCCTGTTATTCACAATTTCCTGGCTGCCTCTGTGGACTCTGATGCTCCTCACGGATTATGGAGGTCTAAATGAAGATGAGCTAGAACTGCTGAGCGGCTATGTGTTCCCGTTTGCTCACTGGTTGGCCTTCTCCAATTCCAGCGTCAATCCGATCATCTATGGTTACTACAACGAGAACTTCAAGAGGGGTTTTCAGGCGGTCTGCAGGGCACATTCGTGCTGCTTCGAGGGAATGACAGCAAGAAGAGGAATGCGACGGAAAGCAAGAGGAGAAACGAGGGATCCTGCCGTTAACTCCAATCCTTTGAATTTTGGTGCAAGGAACAGGGTTTACACCGACGGCGACCTGAAGAACTCTGGCACGTGTTTGGAGCTGGAGCACAGAAGGACTGGAAGACTTTGTAATAACTCTGTGTGCTCCAATGAAACTGGATCCAGCGTGGGATCTGGGATTAAAGGGGTGACGAACCAAAAAGCCTTTCAGATGGAGGAGGCAGAGAAAAAAAGTCCCATCAGAGGGAGTAAAAACCAAGCCTGGGATCAGTAG

Function

symbol description
npffr1l2 Predicted to enable G protein-coupled receptor activity and peptide binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in forebrain and hypothalamus. Orthologous to human NPFFR1 (neuropeptide FF receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008188 neuropeptide receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0042277 peptide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-110 Predicted to enable G protein-coupled receptor activity and peptide binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in forebrain and hypothalamus. Orthologous to human NPFFR1 (neuropeptide FF receptor 1).

Ensembl:

ensembl_id ENSDARG00000062631

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060081 False 1442 mRNA 0.51 3 14165567 14211487
TCONS_00060082 True 1944 mRNA 0.52 4 14165567 14239078

Neighbor

gene id symbol gene type direction distance location
XLOC_030903 figla coding downstream 317271 13839316 ~ 13848296 (-)
XLOC_030902 add2 coding downstream 330011 13781968 ~ 13835556 (-)
XLOC_030901 snrnp27 coding downstream 386841 13767743 ~ 13778726 (-)
XLOC_030900 mxd1 coding downstream 398916 13706959 ~ 13766651 (-)
XLOC_030899 zgc:65851 coding downstream 480520 13671614 ~ 13685047 (-)
XLOC_030905 CR388049.1 coding upstream 6071 14245149 ~ 14245280 (-)
XLOC_030906 tet3 coding upstream 67397 14306475 ~ 14373662 (-)
XLOC_030907 ap3m2 coding upstream 136030 14375108 ~ 14390445 (-)
XLOC_030908 kat6a coding upstream 155245 14394323 ~ 14443124 (-)
XLOC_030909 si:ch211-244o22.2 coding upstream 238204 14477282 ~ 14522712 (-)
XLOC_030896 AL954191.1 non-coding downstream 632579 13532874 ~ 13532988 (-)
XLOC_030893 NA non-coding downstream 858862 13277241 ~ 13306705 (-)
XLOC_030888 NA non-coding downstream 1328960 12835526 ~ 12836607 (-)
XLOC_030881 BX276096.2 non-coding downstream 1799242 12366209 ~ 12366325 (-)
XLOC_030880 CR735143.1 non-coding downstream 1972553 12192898 ~ 12193014 (-)
XLOC_030911 NA non-coding upstream 541764 14780842 ~ 15176098 (-)
XLOC_030912 NA non-coding upstream 760544 14999622 ~ 14999996 (-)
XLOC_030913 CR936518.1 non-coding upstream 947745 15186823 ~ 15215784 (-)
XLOC_030915 NA non-coding upstream 1068461 15307539 ~ 15310108 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_04007497_04017876 NPFFR1L2 coding CI01000071 null 4007033 ~ 4018226 (+)
bowfin (Amia calva) AMCG00020806 NA coding CM030127.1 CM030127.1 34151480 ~ 34155511 (+)